mRNA_P-wetherbeei_contig13653.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig13653.2.1
Unique NamemRNA_P-wetherbeei_contig13653.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
[Close]
BLAST of mRNA_P-wetherbeei_contig13653.2.1 vs. uniprot
Match: D8LQ08_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQ08_ECTSI)

HSP 1 Score: 60.1 bits (144), Expect = 2.850e-9
Identity = 26/44 (59.09%), Postives = 31/44 (70.45%), Query Frame = 1 
Query:   16 PIRTYLSFVLAIETAALIFTCLLVCYNPRDSVEDMLWKTGVLAR 147
            P R Y +FV  +E   LI TCLL+CYNPRDS ED+L KTG + R
Sbjct:  233 PARKYSTFVFVLEGMVLILTCLLICYNPRDSTEDILIKTGTIMR 276
[Close]
BLAST of mRNA_P-wetherbeei_contig13653.2.1 vs. uniprot
Match: W7U843_9STRA (Tetraspanin n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U843_9STRA)

HSP 1 Score: 52.8 bits (125), Expect = 1.090e-6
Identity = 21/41 (51.22%), Postives = 32/41 (78.05%), Query Frame = 1 
Query:   19 IRTYLSFVLAIETAALIFTCLLVCYNPRDSVEDMLWKTGVL 141
            ++ YL+F+L ++   LI TC+L+CYNPRDS  ++L KTGV+
Sbjct:  284 LQKYLNFLLILQLIVLISTCMLICYNPRDSFAELLAKTGVV 324
[Close]
BLAST of mRNA_P-wetherbeei_contig13653.2.1 vs. uniprot
Match: A0A6H5JEQ5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEQ5_9PHAE)

HSP 1 Score: 49.3 bits (116), Expect = 1.840e-5
Identity = 20/28 (71.43%), Postives = 23/28 (82.14%), Query Frame = 1 
Query:   64 LIFTCLLVCYNPRDSVEDMLWKTGVLAR 147
            LI TCLL+CYNPRDS ED+L KTG + R
Sbjct:    3 LILTCLLICYNPRDSTEDILIKTGTIVR 30
[Close]
BLAST of mRNA_P-wetherbeei_contig13653.2.1 vs. uniprot
Match: A0A7S2G7W8_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2G7W8_9STRA)

HSP 1 Score: 47.4 bits (111), Expect = 8.560e-5
Identity = 21/43 (48.84%), Postives = 28/43 (65.12%), Query Frame = 1 
Query:   16 PIRTYLSFVLAIETAALIFTCLLVCYNPRDSVEDMLWKTGVLA 144
            PI  Y  FV   ETA +I TC L+C+NPRD+ + +L K+G  A
Sbjct:  242 PIGEYGIFVCIFETALMILTCCLICFNPRDAEQTILMKSGNFA 284
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig13653.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LQ08_ECTSI2.850e-959.09Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
W7U843_9STRA1.090e-651.22Tetraspanin n=1 Tax=Nannochloropsis gaditana TaxID... [more]
A0A6H5JEQ5_9PHAE1.840e-571.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2G7W8_9STRA8.560e-548.84Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig13653contigP-wetherbeei_contig13653:487..633 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LQ08
Model size147
Max annot lvl2759|Eukaryota
Hectar predicted targeting categorysignal anchor
Exons1
Evalue4.68e-10
EggNOG OGs2EQYQ@1|root,2STVK@2759|Eukaryota
Ec32 ortholog descriptionTetraspanin/Peripherin
Ec32 orthologEc-15_001390.1
Cds size147
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185994.0940454-CDS-P-wetherbeei_contig13653:486..6331683185994.0940454-CDS-P-wetherbeei_contig13653:486..633Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13653 487..633 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig13653.2.1prot_P-wetherbeei_contig13653.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig13653 487..633 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig13653.2.1

>prot_P-wetherbeei_contig13653.2.1 ID=prot_P-wetherbeei_contig13653.2.1|Name=mRNA_P-wetherbeei_contig13653.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=49bp
SHDNRPIRTYLSFVLAIETAALIFTCLLVCYNPRDSVEDMLWKTGVLAR
back to top

mRNA from alignment at P-wetherbeei_contig13653:487..633-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig13653.2.1 ID=mRNA_P-wetherbeei_contig13653.2.1|Name=mRNA_P-wetherbeei_contig13653.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=147bp|location=Sequence derived from alignment at P-wetherbeei_contig13653:487..633- (Phaeothamnion wetherbeei SAG_119_79)
TCTCACGACAACAGGCCCATCCGGACGTACCTGTCGTTCGTTTTGGCCAT
CGAGACGGCGGCGCTAATCTTCACCTGTCTCCTGGTGTGCTACAACCCCC
GGGACTCCGTGGAGGACATGTTGTGGAAGACGGGCGTCCTCGCTCGG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig13653:487..633-

>mRNA_P-wetherbeei_contig13653.2.1 ID=mRNA_P-wetherbeei_contig13653.2.1|Name=mRNA_P-wetherbeei_contig13653.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=147bp|location=Sequence derived from alignment at P-wetherbeei_contig13653:487..633- (Phaeothamnion wetherbeei SAG_119_79)
TCTCACGACAACAGGCCCATCCGGACGTACCTGTCGTTCGTTTTGGCCAT
CGAGACGGCGGCGCTAATCTTCACCTGTCTCCTGGTGTGCTACAACCCCC
GGGACTCCGTGGAGGACATGTTGTGGAAGACGGGCGTCCTCGCTCGG
back to top