mRNA_P-wetherbeei_contig13651.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig13651.2.1
Unique NamemRNA_P-wetherbeei_contig13651.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig13651.2.1 vs. uniprot
Match: A0A3C2B2H9_9ACTN (Prokaryotic ubiquitin-like protein Pup n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A3C2B2H9_9ACTN)

HSP 1 Score: 112 bits (280), Expect = 2.480e-31
Identity = 59/64 (92.19%), Postives = 61/64 (95.31%), Query Frame = 1 
Query:    4 MAERTQKQKPAPSRTEEVVEDAPAVAGQGDKLKAELDDLLDEIDDVLETNAEDFVKSYVQKGGQ 195
            MAERTQKQKPAPSRT+E VE APAVAG GDKLKAELDDLLDEID+VLETNAEDFVKSYVQKGGQ
Sbjct:    1 MAERTQKQKPAPSRTDEAVEAAPAVAGSGDKLKAELDDLLDEIDEVLETNAEDFVKSYVQKGGQ 64
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BLAST of mRNA_P-wetherbeei_contig13651.2.1 vs. uniprot
Match: A0A6I3WS20_9ACTN (Prokaryotic ubiquitin-like protein Pup n=2 Tax=root TaxID=1 RepID=A0A6I3WS20_9ACTN)

HSP 1 Score: 105 bits (261), Expect = 1.970e-28
Identity = 54/64 (84.38%), Postives = 58/64 (90.62%), Query Frame = 1 
Query:    4 MAERTQKQKPAPSRTEEVVEDAPAVAGQGDKLKAELDDLLDEIDDVLETNAEDFVKSYVQKGGQ 195
            MAERTQKQKP P+RTEE VE AP+   QGDKLKAELDDLLDEID+VLETNAEDFVKSYVQKGG+
Sbjct:    1 MAERTQKQKPTPARTEEAVESAPSPTAQGDKLKAELDDLLDEIDEVLETNAEDFVKSYVQKGGE 64
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BLAST of mRNA_P-wetherbeei_contig13651.2.1 vs. uniprot
Match: A0A6I3ES15_9ACTN (Prokaryotic ubiquitin-like protein Pup n=2 Tax=root TaxID=1 RepID=A0A6I3ES15_9ACTN)

HSP 1 Score: 102 bits (253), Expect = 3.270e-27
Identity = 52/64 (81.25%), Postives = 58/64 (90.62%), Query Frame = 1 
Query:    4 MAERTQKQKPAPSRTEEVVEDAPAVAGQGDKLKAELDDLLDEIDDVLETNAEDFVKSYVQKGGQ 195
            MAERTQKQKP PSRT+E V + PA+A  GDKLKAELDDLLDEID+VLE+NAEDFVKSYVQKGG+
Sbjct:    1 MAERTQKQKPVPSRTDETVGEDPAIAASGDKLKAELDDLLDEIDEVLESNAEDFVKSYVQKGGE 64
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BLAST of mRNA_P-wetherbeei_contig13651.2.1 vs. uniprot
Match: A0A7X9KN84_9ACTN (Prokaryotic ubiquitin-like protein Pup n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7X9KN84_9ACTN)

HSP 1 Score: 101 bits (251), Expect = 6.610e-27
Identity = 54/64 (84.38%), Postives = 55/64 (85.94%), Query Frame = 1 
Query:    4 MAERTQKQKPAPSRTEEVVEDAPAVAGQGDKLKAELDDLLDEIDDVLETNAEDFVKSYVQKGGQ 195
            MAERTQKQK  P+RTEE  E APA A   DKLKAELDDLLDEIDDVLETNAEDFVKSYVQKGGQ
Sbjct:    1 MAERTQKQKQVPTRTEEAAEVAPATAASSDKLKAELDDLLDEIDDVLETNAEDFVKSYVQKGGQ 64
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BLAST of mRNA_P-wetherbeei_contig13651.2.1 vs. uniprot
Match: A0A7K0VJQ6_9ACTN (Prokaryotic ubiquitin-like protein Pup n=2 Tax=root TaxID=1 RepID=A0A7K0VJQ6_9ACTN)

HSP 1 Score: 99.0 bits (245), Expect = 5.440e-26
Identity = 53/64 (82.81%), Postives = 56/64 (87.50%), Query Frame = 1 
Query:    4 MAERTQKQKPAPSRTEEVVEDAPAVAGQGDKLKAELDDLLDEIDDVLETNAEDFVKSYVQKGGQ 195
            MAE TQKQK A SRTEE +ED P  A QG+KLKAELDDLLDEIDDVLETNAEDFVKSYVQKGG+
Sbjct:    1 MAEHTQKQKQASSRTEETLEDLPVGAPQGEKLKAELDDLLDEIDDVLETNAEDFVKSYVQKGGE 64
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BLAST of mRNA_P-wetherbeei_contig13651.2.1 vs. uniprot
Match: A0A539E1X8_9ACTN (Prokaryotic ubiquitin-like protein Pup n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A539E1X8_9ACTN)

HSP 1 Score: 98.6 bits (244), Expect = 7.730e-26
Identity = 52/64 (81.25%), Postives = 55/64 (85.94%), Query Frame = 1 
Query:    4 MAERTQKQKPAPSRTEEVVEDAPAVAGQGDKLKAELDDLLDEIDDVLETNAEDFVKSYVQKGGQ 195
            MAERTQKQKP PSR +E V +APA    G+KLKAELDDLLDEID VLETNAEDFVKSYVQKGGQ
Sbjct:    1 MAERTQKQKPTPSRADEEVVEAPATTATGEKLKAELDDLLDEIDGVLETNAEDFVKSYVQKGGQ 64
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BLAST of mRNA_P-wetherbeei_contig13651.2.1 vs. uniprot
Match: A0A7K1B2Z5_9ACTN (Prokaryotic ubiquitin-like protein Pup n=2 Tax=root TaxID=1 RepID=A0A7K1B2Z5_9ACTN)

HSP 1 Score: 96.7 bits (239), Expect = 4.600e-25
Identity = 54/65 (83.08%), Postives = 57/65 (87.69%), Query Frame = 1 
Query:    4 MAERTQKQKPAPSRTE-EVVEDAPAVAGQGDKLKAELDDLLDEIDDVLETNAEDFVKSYVQKGGQ 195
            MAERTQKQK + SRTE EVV+ APA    G+KLKAELDDLLDEIDDVLETNAEDFVKSYVQKGGQ
Sbjct:    1 MAERTQKQKTSTSRTEDEVVDGAPATTATGEKLKAELDDLLDEIDDVLETNAEDFVKSYVQKGGQ 65
[Close]
BLAST of mRNA_P-wetherbeei_contig13651.2.1 vs. uniprot
Match: A0A6B1C489_9ACTN (Prokaryotic ubiquitin-like protein Pup n=2 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A6B1C489_9ACTN)

HSP 1 Score: 95.9 bits (237), Expect = 9.050e-25
Identity = 49/64 (76.56%), Postives = 57/64 (89.06%), Query Frame = 1 
Query:    4 MAERTQKQKPAPSRTEEVVEDAPAVAGQGDKLKAELDDLLDEIDDVLETNAEDFVKSYVQKGGQ 195
            MAER Q +KPAP R E  VEDAPA +GQG++LKAELD+LLDEID+VLE+NAEDFVKSY+QKGGQ
Sbjct:    1 MAEREQIKKPAPQREESEVEDAPATSGQGEELKAELDELLDEIDEVLESNAEDFVKSYIQKGGQ 64
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BLAST of mRNA_P-wetherbeei_contig13651.2.1 vs. uniprot
Match: A0A6N2DQJ2_9ACTN (Prokaryotic ubiquitin-like protein Pup n=1 Tax=Ilumatobacter sp. TaxID=1967498 RepID=A0A6N2DQJ2_9ACTN)

HSP 1 Score: 94.7 bits (234), Expect = 2.660e-24
Identity = 52/65 (80.00%), Postives = 57/65 (87.69%), Query Frame = 1 
Query:    4 MAERTQKQKPAPSRTEEVVEDA-PAVAGQGDKLKAELDDLLDEIDDVLETNAEDFVKSYVQKGGQ 195
            MAER QKQK  P RT+EVVE+A PA +  G+KLKAELDDLLDEID+VLETNAEDFVKSYVQKGGQ
Sbjct:    1 MAERQQKQKQTPPRTDEVVEEAAPATSESGEKLKAELDDLLDEIDEVLETNAEDFVKSYVQKGGQ 65
[Close]
BLAST of mRNA_P-wetherbeei_contig13651.2.1 vs. uniprot
Match: A0A848UND6_9ACTN (Prokaryotic ubiquitin-like protein Pup n=1 Tax=Ilumatobacter sp. TaxID=1967498 RepID=A0A848UND6_9ACTN)

HSP 1 Score: 94.0 bits (232), Expect = 5.380e-24
Identity = 52/65 (80.00%), Postives = 56/65 (86.15%), Query Frame = 1 
Query:    4 MAERTQKQKPAPSRTEEVVEDA-PAVAGQGDKLKAELDDLLDEIDDVLETNAEDFVKSYVQKGGQ 195
            MAERTQK KP   R EEVVE+A PA +  G+KLKAELDDLLDEID+VLETNAEDFVKSYVQKGGQ
Sbjct:    1 MAERTQKPKPTTEREEEVVEEAAPATSESGEKLKAELDDLLDEIDEVLETNAEDFVKSYVQKGGQ 65
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig13651.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3C2B2H9_9ACTN2.480e-3192.19Prokaryotic ubiquitin-like protein Pup n=1 Tax=Aci... [more]
A0A6I3WS20_9ACTN1.970e-2884.38Prokaryotic ubiquitin-like protein Pup n=2 Tax=roo... [more]
A0A6I3ES15_9ACTN3.270e-2781.25Prokaryotic ubiquitin-like protein Pup n=2 Tax=roo... [more]
A0A7X9KN84_9ACTN6.610e-2784.38Prokaryotic ubiquitin-like protein Pup n=1 Tax=Act... [more]
A0A7K0VJQ6_9ACTN5.440e-2682.81Prokaryotic ubiquitin-like protein Pup n=2 Tax=roo... [more]
A0A539E1X8_9ACTN7.730e-2681.25Prokaryotic ubiquitin-like protein Pup n=1 Tax=Aci... [more]
A0A7K1B2Z5_9ACTN4.600e-2583.08Prokaryotic ubiquitin-like protein Pup n=2 Tax=roo... [more]
A0A6B1C489_9ACTN9.050e-2576.56Prokaryotic ubiquitin-like protein Pup n=2 Tax=Aci... [more]
A0A6N2DQJ2_9ACTN2.660e-2480.00Prokaryotic ubiquitin-like protein Pup n=1 Tax=Ilu... [more]
A0A848UND6_9ACTN5.380e-2480.00Prokaryotic ubiquitin-like protein Pup n=1 Tax=Ilu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig13651contigP-wetherbeei_contig13651:1237..1434 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1313172.YM304_26060
Preferred namepup
PFAMsPup
Model size198
Max annot lvl84992|Acidimicrobiia
KEGG koko:K13570
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.32e-22
EggNOG OGs2E9C2@1|root,333JS@2|Bacteria,2HGHP@201174|Actinobacteria,4CNEV@84992|Acidimicrobiia
DescriptionProtein modifier that is covalently attached to lysine residues of substrate proteins, thereby targeting them for proteasomal degradation. The tagging system is termed pupylation
Cds size195
COG categoryO
BRITEko00000,ko04121
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185994.027928-UTR-P-wetherbeei_contig13651:1236..12391683185994.027928-UTR-P-wetherbeei_contig13651:1236..1239Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig13651 1237..1239 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185994.0362792-CDS-P-wetherbeei_contig13651:1239..14341683185994.0362792-CDS-P-wetherbeei_contig13651:1239..1434Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13651 1240..1434 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig13651.2.1prot_P-wetherbeei_contig13651.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig13651 1240..1434 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig13651.2.1

>prot_P-wetherbeei_contig13651.2.1 ID=prot_P-wetherbeei_contig13651.2.1|Name=mRNA_P-wetherbeei_contig13651.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=65bp
MAERTQKQKPAPSRTEEVVEDAPAVAGQGDKLKAELDDLLDEIDDVLETN
AEDFVKSYVQKGGQ*
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mRNA from alignment at P-wetherbeei_contig13651:1237..1434+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig13651.2.1 ID=mRNA_P-wetherbeei_contig13651.2.1|Name=mRNA_P-wetherbeei_contig13651.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=198bp|location=Sequence derived from alignment at P-wetherbeei_contig13651:1237..1434+ (Phaeothamnion wetherbeei SAG_119_79)
ATCATGGCCGAGCGAACCCAGAAGCAGAAACCAGCGCCGTCACGGACGGA
AGAGGTCGTCGAGGATGCGCCGGCTGTCGCCGGACAGGGCGACAAGCTGA
AGGCTGAGCTGGACGATCTCCTCGACGAGATCGACGACGTCCTGGAGACC
AACGCGGAGGACTTCGTCAAGTCCTACGTGCAAAAGGGCGGCCAGTAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig13651:1237..1434+

>mRNA_P-wetherbeei_contig13651.2.1 ID=mRNA_P-wetherbeei_contig13651.2.1|Name=mRNA_P-wetherbeei_contig13651.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=195bp|location=Sequence derived from alignment at P-wetherbeei_contig13651:1237..1434+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCCGAGCGAACCCAGAAGCAGAAACCAGCGCCGTCACGGACGGAAGA
GGTCGTCGAGGATGCGCCGGCTGTCGCCGGACAGGGCGACAAGCTGAAGG
CTGAGCTGGACGATCTCCTCGACGAGATCGACGACGTCCTGGAGACCAAC
GCGGAGGACTTCGTCAAGTCCTACGTGCAAAAGGGCGGCCAGTAG
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