mRNA_P-wetherbeei_contig1364.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1364.2.1
Unique NamemRNA_P-wetherbeei_contig1364.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1364.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1364contigP-wetherbeei_contig1364:961..2129 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7G491
Preferred nameDNAH12
PFAMsDHC_N1
Model size808
Max annot lvl2759|Eukaryota
KEGG koko:K10408
KEGG Pathwayko05016,map05016
Hectar predicted targeting categoryother localisation
Exons3
Evalue0.000131
EggNOG OGsCOG5245@1|root,KOG3595@2759|Eukaryota
Descriptiondynein light chain binding
Cds size762
COG categoryZ
BRITEko00000,ko00001,ko04812
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185993.6700437-CDS-P-wetherbeei_contig1364:960..13331683185993.6700437-CDS-P-wetherbeei_contig1364:960..1333Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1364 961..1333 -
1683185993.6887827-CDS-P-wetherbeei_contig1364:1575..17091683185993.6887827-CDS-P-wetherbeei_contig1364:1575..1709Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1364 1576..1709 -
1683185993.7002308-CDS-P-wetherbeei_contig1364:1830..20851683185993.7002308-CDS-P-wetherbeei_contig1364:1830..2085Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1364 1831..2085 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185993.7121065-UTR-P-wetherbeei_contig1364:2085..21291683185993.7121065-UTR-P-wetherbeei_contig1364:2085..2129Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1364 2086..2129 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1364.2.1prot_P-wetherbeei_contig1364.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1364 961..2085 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1364.2.1

>prot_P-wetherbeei_contig1364.2.1 ID=prot_P-wetherbeei_contig1364.2.1|Name=mRNA_P-wetherbeei_contig1364.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=254bp
MTSLGYHPVREIVETEPSIYSSLTSMIPLSQEIVTAQKLAAQCASMQWAP
SAVRPATAVVEGSDYALSWRAFCEFLREEYEQRRQVNVPSLGAFGFRVLG
HGIHLPTLELRPAYLHRHGLTQERCFASQTAVISGFRKTSRFPPESWAAG
VRAPASSCGEDIGGGDGGRLGALGSKYVAWRQRQVAVTAEMAADGAPGTG
APAVRRRSNRKPSAEASPGRSGGNGGSGGPVVPRERAVFAVENMLHQLGA
AAGR
back to top

mRNA from alignment at P-wetherbeei_contig1364:961..2129-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1364.2.1 ID=mRNA_P-wetherbeei_contig1364.2.1|Name=mRNA_P-wetherbeei_contig1364.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1169bp|location=Sequence derived from alignment at P-wetherbeei_contig1364:961..2129- (Phaeothamnion wetherbeei SAG_119_79)
GTTATTTTGGAAGTAATCTTCTTCACTGACAAGTGTTTCGCGATATGACG
TCGCTAGGATACCACCCGGTCAGGGAAATAGTTGAAACGGAACCCTCTAT
CTACAGCTCTCTAACCTCAATGATCCCCCTCTCTCAAGAAATTGTGACTG
CTCAAAAGTTGGCCGCGCAATGTGCCTCGATGCAATGGGCGCCGAGTGCT
GTACGACCCGCCACCGCCGTCGTGGAGGGTTCTGACTACGCCCTGTCGTG
GCGAGCTTTTTGCGAATTTCTACGGGAGGAGTATGAGCAGCGAAGACAGG
TGCGACAGTACTCAGAATCCTCACGAGTCGCTGTTGTCGCGTTAAAAACC
GCCACCAGCAAGAAGTTCAAACTTTTTAAAGATCAAAGCAACATCCTTGC
CACAATCGTGCCATCTTCAGGTCAATGTGCCATCATTAGGAGCCTTCGGT
TTTCGTGTCCTCGGGCATGGCATTCATCTTCCGACGCTGGAGCTGCGGCC
GGCCTACTTGCACCGACACGGATTGACGCAAGAGCGTTGTTTCGCATCGC
AGACGTGAGCACTGCGTTCTGTTTGTCTTGATAGCGATCGTGTGGCGTCA
ATGAAAATCTTGGGCATGCTTTCCTCCTTCTTTAGCGGTGTTGCTGGCGC
CTAATTTCAACGTCAGTACAGTACACAGGAACGACGCAGTATGTTCAATT
TCGGAATCTGCTGCTGCCTCCAAGCAAGGTTGCAGCAACAACCATTCGCG
AACCAACGACCGATTCGCTCGCTTGAACCTTTCCTGCACCCGGCAGCGCG
GTCATCTCGGGCTTCCGCAAGACGTCCCGCTTCCCGCCGGAATCGTGGGC
GGCCGGTGTCCGTGCCCCCGCATCGTCGTGCGGAGAAGACATTGGCGGCG
GAGACGGCGGCCGCCTTGGCGCATTGGGCAGCAAGTACGTGGCATGGCGG
CAGCGTCAGGTGGCGGTGACGGCAGAAATGGCGGCGGACGGGGCGCCGGG
AACTGGAGCACCAGCGGTTCGCCGCCGCAGCAACAGGAAGCCGAGTGCGG
AAGCGTCGCCGGGTCGGTCGGGCGGGAATGGCGGGAGCGGTGGACCAGTA
GTGCCGCGTGAACGTGCCGTCTTCGCCGTCGAAAACATGCTTCACCAGCT
CGGCGCCGCCGCCGGCAGA
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig1364:961..2129-

>mRNA_P-wetherbeei_contig1364.2.1 ID=mRNA_P-wetherbeei_contig1364.2.1|Name=mRNA_P-wetherbeei_contig1364.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=762bp|location=Sequence derived from alignment at P-wetherbeei_contig1364:961..2129- (Phaeothamnion wetherbeei SAG_119_79)
ATGACGTCGCTAGGATACCACCCGGTCAGGGAAATAGTTGAAACGGAACC
CTCTATCTACAGCTCTCTAACCTCAATGATCCCCCTCTCTCAAGAAATTG
TGACTGCTCAAAAGTTGGCCGCGCAATGTGCCTCGATGCAATGGGCGCCG
AGTGCTGTACGACCCGCCACCGCCGTCGTGGAGGGTTCTGACTACGCCCT
GTCGTGGCGAGCTTTTTGCGAATTTCTACGGGAGGAGTATGAGCAGCGAA
GACAGGTCAATGTGCCATCATTAGGAGCCTTCGGTTTTCGTGTCCTCGGG
CATGGCATTCATCTTCCGACGCTGGAGCTGCGGCCGGCCTACTTGCACCG
ACACGGATTGACGCAAGAGCGTTGTTTCGCATCGCAGACCGCGGTCATCT
CGGGCTTCCGCAAGACGTCCCGCTTCCCGCCGGAATCGTGGGCGGCCGGT
GTCCGTGCCCCCGCATCGTCGTGCGGAGAAGACATTGGCGGCGGAGACGG
CGGCCGCCTTGGCGCATTGGGCAGCAAGTACGTGGCATGGCGGCAGCGTC
AGGTGGCGGTGACGGCAGAAATGGCGGCGGACGGGGCGCCGGGAACTGGA
GCACCAGCGGTTCGCCGCCGCAGCAACAGGAAGCCGAGTGCGGAAGCGTC
GCCGGGTCGGTCGGGCGGGAATGGCGGGAGCGGTGGACCAGTAGTGCCGC
GTGAACGTGCCGTCTTCGCCGTCGAAAACATGCTTCACCAGCTCGGCGCC
GCCGCCGGCAGA
back to top