mRNA_P-wetherbeei_contig13631.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig13631.1.1
Unique NamemRNA_P-wetherbeei_contig13631.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig13631.1.1 vs. uniprot
Match: A0A6H5JEA8_9PHAE (PWWP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEA8_9PHAE)

HSP 1 Score: 112 bits (279), Expect = 1.530e-25
Identity = 59/145 (40.69%), Postives = 84/145 (57.93%), Query Frame = 1 
Query:   64 RWERERDDVTLLQVQGALYGAMSESALEREAFRQGVAAARTVPAMAAAVFAFSSRVTAVLPLLLDQENEEKAVLYGPPGDVGNASNQAFFLKVTPTGEVVWARLQGFPWWPALVVRPDSFRLAAVLAWTGDRMVTFMGESDQYRV 498
            RWE ER+ + L  +   L GA+S     REA+RQ + AART+  +A  V++  +    VLP L +Q+ +E+A++           NQA  ++ + T E+VWARL GFPWWPALVV+P+       L   GDR+V FM E   +RV
Sbjct:  724 RWEMEREGIALANLSAGLQGALSTDPAFREAWRQEMLAARTLAGVATLVYSLLASAAGVLPALQEQDMQEQALI-----------NQALHVRCSSTSEIVWARLHGFPWWPALVVKPEGVGFQRSLLEAGDRLVVFMNEQQHFRV 857
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BLAST of mRNA_P-wetherbeei_contig13631.1.1 vs. uniprot
Match: D8LRK0_ECTSI (Nucleosome/chromatin assembly factor group n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRK0_ECTSI)

HSP 1 Score: 95.1 bits (235), Expect = 1.280e-19
Identity = 49/119 (41.18%), Postives = 75/119 (63.03%), Query Frame = 1 
Query:   64 RWERERDDVTLLQVQGALYGAMSESALEREAFRQGVAAARTVPAMAAAVFAFSSRVTAVLPLLLDQENEEKAVLYGPPGDVGNASNQAFFLKVTPTGEVVWARLQGFPWWPALVVRPDS 420
            RWE ER+ + L  +   L GA+S     REA+R+ + AART+  +A  V++  +    VLP L +Q+ +E+A++     +   A+NQA  ++ + T E+VWARL GFPWWPALVV+P+ 
Sbjct: 1431 RWEMEREGIALANLSAELQGALSTDPAFREAWRKEMLAARTLAGVATLVYSLLTSAAGVLPALQEQDMQEQALI-----NQDLATNQALRVRCSSTSEIVWARLHGFPWWPALVVKPEG 1544
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BLAST of mRNA_P-wetherbeei_contig13631.1.1 vs. uniprot
Match: A0A7S3ZNS7_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZNS7_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 5.180e-6
Identity = 24/56 (42.86%), Postives = 33/56 (58.93%), Query Frame = 1 
Query:  325 AFFLKVTPTGEVVWARLQGFPWWPALVVRPDSFRLAAVLAWTGDRMVTFMGESDQY 492
            A ++   PTGE+VWAR++G+PWWPA    P        L   G  ++ F+GES QY
Sbjct:  746 AVYIPSKPTGELVWARIRGYPWWPARRHEPTRQDFKEALQARGRSLIVFVGESVQY 801
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BLAST of mRNA_P-wetherbeei_contig13631.1.1 vs. uniprot
Match: A0A8J2X491_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2X491_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 5.420e-6
Identity = 24/56 (42.86%), Postives = 33/56 (58.93%), Query Frame = 1 
Query:  325 AFFLKVTPTGEVVWARLQGFPWWPALVVRPDSFRLAAVLAWTGDRMVTFMGESDQY 492
            A ++   PTGE+VWAR++G+PWWPA    P        L   G  ++ F+GES QY
Sbjct: 1284 AVYIPSKPTGELVWARIRGYPWWPARRHEPTRQDFKEALQARGRSLIVFVGESVQY 1339
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig13631.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5JEA8_9PHAE1.530e-2540.69PWWP domain-containing protein n=1 Tax=Ectocarpus ... [more]
D8LRK0_ECTSI1.280e-1941.18Nucleosome/chromatin assembly factor group n=1 Tax... [more]
A0A7S3ZNS7_9STRA5.180e-642.86Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A8J2X491_9STRA5.420e-642.86Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig13631contigP-wetherbeei_contig13631:76..573 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size498
Hectar predicted targeting categoryother localisation
Exons1
Cds size498
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185993.5350149-CDS-P-wetherbeei_contig13631:75..5731683185993.5350149-CDS-P-wetherbeei_contig13631:75..573Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13631 76..573 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig13631.1.1prot_P-wetherbeei_contig13631.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig13631 76..573 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig13631.1.1

>prot_P-wetherbeei_contig13631.1.1 ID=prot_P-wetherbeei_contig13631.1.1|Name=mRNA_P-wetherbeei_contig13631.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=166bp
EADNDAEAETEYEVEYEDDQLRWERERDDVTLLQVQGALYGAMSESALER
EAFRQGVAAARTVPAMAAAVFAFSSRVTAVLPLLLDQENEEKAVLYGPPG
DVGNASNQAFFLKVTPTGEVVWARLQGFPWWPALVVRPDSFRLAAVLAWT
GDRMVTFMGESDQYRV
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mRNA from alignment at P-wetherbeei_contig13631:76..573+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig13631.1.1 ID=mRNA_P-wetherbeei_contig13631.1.1|Name=mRNA_P-wetherbeei_contig13631.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=498bp|location=Sequence derived from alignment at P-wetherbeei_contig13631:76..573+ (Phaeothamnion wetherbeei SAG_119_79)
GAAGCCGACAACGACGCCGAGGCCGAGACGGAGTACGAAGTCGAGTATGA
AGACGACCAGCTGCGGTGGGAGCGGGAGCGGGACGACGTGACGCTACTGC
AGGTTCAGGGTGCGCTCTATGGCGCCATGTCGGAGAGCGCGCTGGAGCGC
GAGGCGTTCCGGCAGGGCGTGGCGGCGGCGCGCACGGTGCCGGCGATGGC
AGCGGCCGTCTTCGCGTTCTCATCGCGCGTCACGGCGGTGCTGCCGCTGC
TGCTGGACCAGGAGAACGAGGAGAAGGCAGTGCTGTACGGTCCGCCGGGC
GACGTCGGCAATGCCTCCAACCAGGCGTTCTTCCTAAAGGTGACGCCAAC
TGGCGAGGTGGTCTGGGCGCGCCTGCAGGGATTTCCCTGGTGGCCGGCGC
TGGTGGTGCGGCCGGACAGCTTCCGGCTGGCGGCGGTCCTGGCGTGGACC
GGCGACCGCATGGTAACTTTCATGGGCGAGTCGGACCAGTACCGCGTC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig13631:76..573+

>mRNA_P-wetherbeei_contig13631.1.1 ID=mRNA_P-wetherbeei_contig13631.1.1|Name=mRNA_P-wetherbeei_contig13631.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=498bp|location=Sequence derived from alignment at P-wetherbeei_contig13631:76..573+ (Phaeothamnion wetherbeei SAG_119_79)
GAAGCCGACAACGACGCCGAGGCCGAGACGGAGTACGAAGTCGAGTATGA
AGACGACCAGCTGCGGTGGGAGCGGGAGCGGGACGACGTGACGCTACTGC
AGGTTCAGGGTGCGCTCTATGGCGCCATGTCGGAGAGCGCGCTGGAGCGC
GAGGCGTTCCGGCAGGGCGTGGCGGCGGCGCGCACGGTGCCGGCGATGGC
AGCGGCCGTCTTCGCGTTCTCATCGCGCGTCACGGCGGTGCTGCCGCTGC
TGCTGGACCAGGAGAACGAGGAGAAGGCAGTGCTGTACGGTCCGCCGGGC
GACGTCGGCAATGCCTCCAACCAGGCGTTCTTCCTAAAGGTGACGCCAAC
TGGCGAGGTGGTCTGGGCGCGCCTGCAGGGATTTCCCTGGTGGCCGGCGC
TGGTGGTGCGGCCGGACAGCTTCCGGCTGGCGGCGGTCCTGGCGTGGACC
GGCGACCGCATGGTAACTTTCATGGGCGAGTCGGACCAGTACCGCGTC
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