mRNA_P-wetherbeei_contig1363.1.4 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1363.1.4
Unique NamemRNA_P-wetherbeei_contig1363.1.4
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig1363.1.4 vs. uniprot
Match: A0A6H5KQ82_9PHAE (4HBT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ82_9PHAE)

HSP 1 Score: 132 bits (332), Expect = 1.940e-30
Identity = 126/455 (27.69%), Postives = 179/455 (39.34%), Query Frame = 3 
Query:  162 RIAEGALALAKRPIAQDIVRGAMV-CWSLGFARTLKMNDHIVLEKASTEPGRVIASYDIPSSVC----TLAAGGEEWLGCGVTLALFDEISSLAIMLGDRTFRAGVSVSMYAQMFEKVRPGERCVVFCDHNHCHGTAVGDPNSFIAVCQAFLAEACTSYLNCALVLFRFPHPSASHLSLLARCGYLDRVIFISTTTKTGAMLGYADTEMRRSSDGRLAAWGRHIKYLPMGRLWDAAMHPAIYPLARHWHQRDLEKRAAEAAARPPAPPPGGRVADTFGLAL--EAAAAADVERQG--TADGISLGSVGGELE-----------VRPEHLNYV-GSMHGGAVCTLAEQLTILAAADAAAPGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAPGSPWLRFMEAEYLLPGKGRLHFGADFRSGGLGTGTAAVTLAR-----GGRMSAMATCIF 1448
            RIA+G     + P+ + ++       W +GFAR+L + D +++     +   + A Y IP ++C    TL  GG   L CGVT ALFDE+S+LA+M+ DRT R GVS+S+   MF  V PGER                                                                 V F S   K GA LGY +  M R  DG+LAA GRH+K+LPMGR WD +  P ++P AR   +R   +   +   R    P G  + D F L          D E  G  T+ G  +    GE+E           V     NY+ G+MHGGA+   AE+++                                              PG+P +++ME  Y+ P K R    A   + G+G     V L+      GG +SA A  ++
Sbjct:    2 RIAKGVSEALRSPVRRGMLEYFTEHVWQVGFARSLGVYDGMLVTSVGQQGSMLEAVYTIPENICVTGGTLGGGGGCVLPCGVTTALFDEVSTLAMMIADRTCRPGVSISLSCHMFHPVAPGER-----------------------------------------------------------------VTFKSRGLKMGARLGYGEASMYRE-DGKLAARGRHVKHLPMGRAWDLSTIPFVFPYARKLSERQHAQWLRD-PERSKGIPTGEHLLDMFKLEQFERVGGGGDEEYFGGATSSGPQVEEQAGEVEGGFRSAEAECLVTRRMCNYMPGTMHGGAIAVAAEEIS-------------------------------RRCPPAPFPMDAVPIPGNPRVQYMEVHYMSPIKRRAGLAAVSAASGIGKNVTRVGLSEAGGTEGGVLSAEAVLLW 358
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BLAST of mRNA_P-wetherbeei_contig1363.1.4 vs. uniprot
Match: D7FYV9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYV9_ECTSI)

HSP 1 Score: 79.3 bits (194), Expect = 6.770e-13
Identity = 74/269 (27.51%), Postives = 106/269 (39.41%), Query Frame = 3 
Query:  705 DRVIFISTTTKTGAMLGYADTEMRRSSDGRLAAWGRHIKYLPMGRLWDAAMHPAIYPLARHWHQRDLEKRAAEAAARPPAPPPGGRVADTFGL---------------ALEAAAAADVERQGTADGISLGSVGGELEVRPEHLNYV-GSMHGGAVCTLAEQLTILAAADAAAPGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAPGSPWLRFMEAEYLLPGKGRLHFGADFRSGGLGTGTAAVTLAR-----GGRMSAMATCIF 1448
            +RV F S   K GA LGY +  M R  DG+LAA GRH+K+LPMGR WD + +P ++P AR   +R   +   +   R    P G  + D F L                +  ++   VE Q   D     S   E  V     NY+ G+MHGGA+   AE++                                               PG+P +++ME  Y+ P K R    A   +  +G     V L+      GG +SA A  ++
Sbjct:    9 ERVTFKSRGLKMGARLGYGEASMYRE-DGKLAARGRHVKHLPMGRAWDLSTNPFVFPYARKMSERQHAQWLRD-PERSKGIPTGEHLLDMFKLEQFERVGGGGDEAYFGVATSSDPQVEEQAGDDEGGFRSAEAECLVTRRMCNYMPGTMHGGAIAVAAEEIA-------------------------------RRCPPAPFPMDAVPIPGNPRVQYMEVHYMSPIKRRAGLAAVSAASEIGKNVTRVGLSEAGGTEGGVLSAEAVLLW 244
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BLAST of mRNA_P-wetherbeei_contig1363.1.4 vs. uniprot
Match: A0A482STT1_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482STT1_9ARCH)

HSP 1 Score: 72.4 bits (176), Expect = 3.550e-10
Identity = 54/204 (26.47%), Postives = 87/204 (42.65%), Query Frame = 3 
Query:  285 LEKASTEPGRVIASYDIPSSVCTLAAGGEEWLGCGVTLALFDEISSLAIMLGDRTFRAGVSVSMYAQMFEKVRPGERCVVFCDHNHCHGTAVGDPNSFIAVCQAFLAEACTSYLNCALVLFRFPHPSASHLSLLARCGYLDRVIFISTTTKTGAMLGYADTEMRRSSDGRLAAWGRHIKYLPMGRLWDAAMHPAIYPLARHWHQ 896
            L++ +  P  +   Y +P S+C +    +  +     LALFDE+S+ A+++ D+ +R GVSV +  ++   ++P                                       LN                         + V+  +T  K G +LG+   EMR S +G L A G+HIK+LPMG LWD   HPAI P+A +++Q
Sbjct:   31 LKQVNKIPKGLAFHYKVPPSLCRIQKS-KPVISNAAVLALFDELSTDALIVTDKNYRGGVSVHLTTEL---IKPAS-------------------------------------LN-------------------------EDVVIHTTADKIGKVLGFCSMEMR-SKEGTLLAKGKHIKFLPMGWLWDLVSHPAILPIALYFYQ 167
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BLAST of mRNA_P-wetherbeei_contig1363.1.4 vs. uniprot
Match: A0A4D9CYT7_9STRA (4HBT domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CYT7_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 2.340e-6
Identity = 37/101 (36.63%), Postives = 59/101 (58.42%), Query Frame = 3 
Query:  207 QDIVRGAMVCWSLGFARTLKMNDHIVLEKASTEPGRVIASYDIPSSVCTLAAGGEEWLGCGVTLALFDEISSLAIMLGDRTFRAGVSVSMYAQMFEKVRPG 509
            +D +    +  S+ FA TL+++D  VLE+   + G +  +++I   +C    GG  +L  GV  A+FDEIS+ A +L DRT R GVSV++  ++   V PG
Sbjct:   18 EDALEFTQLFHSINFAHTLQVSD-AVLERYDAKKG-LETTHEITKYLCRTDEGGT-YLSAGVITAVFDEISTAACILQDRTHRPGVSVALDVEVMANVTPG 115
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1363.1.4 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5KQ82_9PHAE1.940e-3027.694HBT domain-containing protein n=1 Tax=Ectocarpus ... [more]
D7FYV9_ECTSI6.770e-1327.51Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A482STT1_9ARCH3.550e-1026.47Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A4D9CYT7_9STRA2.340e-636.634HBT domain-containing protein n=2 Tax=Monodopsida... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1363contigP-wetherbeei_contig1363:754..3124 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FYV9
Model size1652
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons4
Evalue1.33e-13
EggNOG OGs2EY9U@1|root,2SZTY@2759|Eukaryota
Cds size1305
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1363.1.4prot_P-wetherbeei_contig1363.1.4Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1363 906..2929 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185993.3835156-UTR-P-wetherbeei_contig1363:753..9051683185993.3835156-UTR-P-wetherbeei_contig1363:753..905Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1363 754..905 +
1683185993.4284792-UTR-P-wetherbeei_contig1363:2929..31241683185993.4284792-UTR-P-wetherbeei_contig1363:2929..3124Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1363 2930..3124 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185993.3994455-CDS-P-wetherbeei_contig1363:905..11661683185993.3994455-CDS-P-wetherbeei_contig1363:905..1166Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1363 906..1166 +
1683185993.406808-CDS-P-wetherbeei_contig1363:1356..16801683185993.406808-CDS-P-wetherbeei_contig1363:1356..1680Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1363 1357..1680 +
1683185993.4140255-CDS-P-wetherbeei_contig1363:1957..23261683185993.4140255-CDS-P-wetherbeei_contig1363:1957..2326Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1363 1958..2326 +
1683185993.421243-CDS-P-wetherbeei_contig1363:2578..29291683185993.421243-CDS-P-wetherbeei_contig1363:2578..2929Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1363 2579..2929 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1363.1.4

>prot_P-wetherbeei_contig1363.1.4 ID=prot_P-wetherbeei_contig1363.1.4|Name=mRNA_P-wetherbeei_contig1363.1.4|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=435bp
MAARIAEGALALAKRPIAQDIVRGAMVCWSLGFARTLKMNDHIVLEKAST
EPGRVIASYDIPSSVCTLAAGGEEWLGCGVTLALFDEISSLAIMLGDRTF
RAGVSVSMYAQMFEKVRPGERCVVFCDHNHCHGTAVGDPNSFIAVCQAFL
AEACTSYLNCALVLFRFPHPSASHLSLLARCGYLDRVIFISTTTKTGAML
GYADTEMRRSSDGRLAAWGRHIKYLPMGRLWDAAMHPAIYPLARHWHQRD
LEKRAAEAAARPPAPPPGGRVADTFGLALEAAAAADVERQGTADGISLGS
VGGELEVRPEHLNYVGSMHGGAVCTLAEQLTILAAADAAAPGAAAAVGPA
AAAGLAATATAAAAAAATAAVATAAAAPGSPWLRFMEAEYLLPGKGRLHF
GADFRSGGLGTGTAAVTLARGGRMSAMATCIFGD*
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mRNA from alignment at P-wetherbeei_contig1363:754..3124+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1363.1.4 ID=mRNA_P-wetherbeei_contig1363.1.4|Name=mRNA_P-wetherbeei_contig1363.1.4|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2371bp|location=Sequence derived from alignment at P-wetherbeei_contig1363:754..3124+ (Phaeothamnion wetherbeei SAG_119_79)
CTCTTGCGGACTCATTCCGGAACCATTAGGGGGCGTCTCTGCAGCACGTG
CAGCCCGTTATTTCCTCGTTTAAGGCACATCGCCCAGCAGGAGTCCCCAA
AGGCAACGAGATTTGTGCCTTTCACACCTCGAGGCGTGCAACGACTTTTG
AGATGGCTGCTCGAATCGCAGAAGGCGCACTTGCCTTGGCAAAGAGGCCC
ATTGCTCAGGACATCGTCCGAGGCGCCATGGTGTGCTGGAGTCTCGGTTT
CGCTAGGACGTTAAAGATGAACGACCACATCGTGCTGGAAAAAGCTTCGA
CGGAACCAGGCCGCGTCATTGCATCGTACGACATTCCCTCTTCGGTCTGC
ACGCTGGCCGCGGGAGGCGAAGAATGGCTCGGCTGTGGGGTCACGCTCGC
TCTCTTTGACGAGGTAAGTCTCTCTCTTTTTGAAGAGAAGTTTTTGAGGT
CGCACCCTTGCTGCCGGTTTGCAAAGGGGCAAGGTTGCGCGCCGCCTTGC
GTTTTGTTGCTCTTAAGCGCGCATCTTACAGACGATCTGTTCTAAGATTT
CGGCGCTAAGGAAGGATTGAGAAAACGTGTGTCTTTTCGCTTGTGGCCCT
CAGATCTCTTCGTTGGCTATCATGCTGGGCGACCGGACGTTCCGCGCCGG
CGTCAGTGTGTCTATGTATGCGCAGATGTTCGAGAAGGTCCGCCCCGGTG
AAAGGTGCGTCGTGTTTTGTGACCATAACCACTGTCATGGTACAGCTGTG
GGAGACCCAAACAGCTTTATCGCTGTATGCCAGGCATTCTTGGCAGAAGC
ATGTACCTCATATTTGAACTGTGCGCTCGTCCTCTTCCGTTTCCCGCACC
CTTCTGCTTCTCACCTTTCCCTTTTGGCTCGCTGCGGGTATCTCGACAGG
GTCATCTTTATTTCAACAACAACCAAGGTGCGATGCGCTCTGTCCGCACC
TGCCGCTGCCCGCCGCCCCTATTTACGAACGTTGTGCAGATTCAAAAAGA
CATTACTTCCCGGATCATTTGTGTTCCAGGTGCACCTCTTTCCATTTCTC
TCGCTATTTCGCGTGACTGCATGCTGGTTTTCTCGTGTCGATCGCCTTTC
AGCTGTCTGAACTCGAAACTCTCGTTCGCCTGGCTCTGTCGCGACGGTTA
CGGCGGTTATGACGGGTGCGCGGGCGATCGCTCCACCCAAGCAAATGACA
CCAGACGGGCGCCATGCTGGGCTACGCCGACACAGAGATGCGCCGCAGCA
GTGACGGCCGGCTGGCGGCGTGGGGCCGCCACATCAAGTACCTGCCGATG
GGCCGCCTGTGGGATGCCGCAATGCACCCGGCGATATACCCGCTGGCCCG
GCACTGGCACCAGCGCGACCTTGAGAAGCGGGCGGCAGAGGCGGCGGCGC
GGCCGCCGGCGCCGCCACCTGGCGGGCGCGTCGCAGACACGTTTGGGCTG
GCGCTGGAAGCGGCGGCGGCAGCGGACGTGGAGCGGCAGGGGACGGCCGA
TGGCATTTCGCTGGGATCCGTCGGAGGAGAGCTAGAAGTCCGGCCGGAGC
ACCTCAACTACGTCGGCTCCATGGTGAGTCCACTGTGGTGTGTTGGGCAG
AACTTTTACTCGGATGGCAGATGCAGCTGTATGTGCAATCACAAATTTGC
GACATTTGGCTCTCCCCGCCGTTCTTAAATAACTTCGATCGCCGCGGAGA
CCCATCTTATCCGTGGTGGAATCCTGTCCATGTCTTCCTTTCTGCTTTCG
CTCTCTCTTCTGGTTCCTGATTTGCGAGCCTCCCTCCGCCTTCCTAATGC
ACTCGTCTCCTTTTCTTCCCTGCAGCACGGTGGCGCCGTGTGCACGCTGG
CTGAGCAGCTCACAATTTTGGCGGCCGCAGACGCGGCCGCGCCCGGAGCG
GCGGCGGCGGTGGGACCAGCGGCAGCGGCGGGACTAGCAGCAACAGCAAC
GGCTGCAGCAGCGGCGGCAGCAACGGCGGCGGTGGCAACGGCGGCGGCTG
CTCCGGGAAGCCCCTGGCTGCGTTTCATGGAGGCGGAGTACCTGCTACCG
GGCAAGGGACGGCTGCATTTCGGCGCCGACTTTCGCTCAGGCGGACTTGG
CACGGGCACCGCTGCCGTGACGCTGGCGCGGGGCGGCCGGATGTCCGCGA
TGGCGACGTGCATCTTCGGCGACTGATGCTGCCGCCGCCGGCGAGGGAAA
CCTGTAGATCTCCCAAACTCTAGAGACGTAGCGGCGTACAAGAAAGAAGT
CGAGGTGTGCGCTGCCGCTTTCCTTGTTTATACCATTTGCGCTGAGCGGA
GGGCGTTTGAGGGAAAAAGACACATCAAGCGGAGGAACGACCAAACAATA
AATCGAAAATGGACTTCAGTG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1363:754..3124+

>mRNA_P-wetherbeei_contig1363.1.4 ID=mRNA_P-wetherbeei_contig1363.1.4|Name=mRNA_P-wetherbeei_contig1363.1.4|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1305bp|location=Sequence derived from alignment at P-wetherbeei_contig1363:754..3124+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCTGCTCGAATCGCAGAAGGCGCACTTGCCTTGGCAAAGAGGCCCAT
TGCTCAGGACATCGTCCGAGGCGCCATGGTGTGCTGGAGTCTCGGTTTCG
CTAGGACGTTAAAGATGAACGACCACATCGTGCTGGAAAAAGCTTCGACG
GAACCAGGCCGCGTCATTGCATCGTACGACATTCCCTCTTCGGTCTGCAC
GCTGGCCGCGGGAGGCGAAGAATGGCTCGGCTGTGGGGTCACGCTCGCTC
TCTTTGACGAGATCTCTTCGTTGGCTATCATGCTGGGCGACCGGACGTTC
CGCGCCGGCGTCAGTGTGTCTATGTATGCGCAGATGTTCGAGAAGGTCCG
CCCCGGTGAAAGGTGCGTCGTGTTTTGTGACCATAACCACTGTCATGGTA
CAGCTGTGGGAGACCCAAACAGCTTTATCGCTGTATGCCAGGCATTCTTG
GCAGAAGCATGTACCTCATATTTGAACTGTGCGCTCGTCCTCTTCCGTTT
CCCGCACCCTTCTGCTTCTCACCTTTCCCTTTTGGCTCGCTGCGGGTATC
TCGACAGGGTCATCTTTATTTCAACAACAACCAAGACGGGCGCCATGCTG
GGCTACGCCGACACAGAGATGCGCCGCAGCAGTGACGGCCGGCTGGCGGC
GTGGGGCCGCCACATCAAGTACCTGCCGATGGGCCGCCTGTGGGATGCCG
CAATGCACCCGGCGATATACCCGCTGGCCCGGCACTGGCACCAGCGCGAC
CTTGAGAAGCGGGCGGCAGAGGCGGCGGCGCGGCCGCCGGCGCCGCCACC
TGGCGGGCGCGTCGCAGACACGTTTGGGCTGGCGCTGGAAGCGGCGGCGG
CAGCGGACGTGGAGCGGCAGGGGACGGCCGATGGCATTTCGCTGGGATCC
GTCGGAGGAGAGCTAGAAGTCCGGCCGGAGCACCTCAACTACGTCGGCTC
CATGCACGGTGGCGCCGTGTGCACGCTGGCTGAGCAGCTCACAATTTTGG
CGGCCGCAGACGCGGCCGCGCCCGGAGCGGCGGCGGCGGTGGGACCAGCG
GCAGCGGCGGGACTAGCAGCAACAGCAACGGCTGCAGCAGCGGCGGCAGC
AACGGCGGCGGTGGCAACGGCGGCGGCTGCTCCGGGAAGCCCCTGGCTGC
GTTTCATGGAGGCGGAGTACCTGCTACCGGGCAAGGGACGGCTGCATTTC
GGCGCCGACTTTCGCTCAGGCGGACTTGGCACGGGCACCGCTGCCGTGAC
GCTGGCGCGGGGCGGCCGGATGTCCGCGATGGCGACGTGCATCTTCGGCG
ACTGA
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