mRNA_P-wetherbeei_contig1362.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1362.1.1
Unique NamemRNA_P-wetherbeei_contig1362.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig1362.1.1 vs. uniprot
Match: D8LMG4_ECTSI (Ubiquitin-like domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMG4_ECTSI)

HSP 1 Score: 68.9 bits (167), Expect = 2.070e-13
Identity = 33/44 (75.00%), Postives = 38/44 (86.36%), Query Frame = 1 
Query:    1 VVFELPDGSQGEQQFQLGQTVEVLKSFVASEFGIPMAGQASLIG 132
            VVF+LPDGSQ +Q+FQLGQTVEVLKSFV SEFGIPM+ Q   +G
Sbjct:   80 VVFDLPDGSQADQEFQLGQTVEVLKSFVESEFGIPMSCQELYLG 123
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BLAST of mRNA_P-wetherbeei_contig1362.1.1 vs. uniprot
Match: A0A7S2RY85_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RY85_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 1.970e-12
Identity = 31/39 (79.49%), Postives = 35/39 (89.74%), Query Frame = 1 
Query:    1 VVFELPDGSQGEQQFQLGQTVEVLKSFVASEFGIPMAGQ 117
            VVF+LPDGSQ E +FQ+GQT+EVLKSFVASE GIPM GQ
Sbjct:   54 VVFDLPDGSQVEHKFQMGQTIEVLKSFVASECGIPMGGQ 92
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BLAST of mRNA_P-wetherbeei_contig1362.1.1 vs. uniprot
Match: A0A482RPU6_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RPU6_9ARCH)

HSP 1 Score: 65.5 bits (158), Expect = 3.320e-12
Identity = 31/47 (65.96%), Postives = 37/47 (78.72%), Query Frame = 1 
Query:    1 VVFELPDGSQGEQQFQLGQTVEVLKSFVASEFGIPMAGQASLIGRCD 141
            VVF+LPDGSQGE  F+LGQ+VEVLKSFV SE+GIPMA Q   +   +
Sbjct:   79 VVFDLPDGSQGEGNFKLGQSVEVLKSFVESEYGIPMATQRMFLNSSE 125
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BLAST of mRNA_P-wetherbeei_contig1362.1.1 vs. uniprot
Match: F0YBA1_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YBA1_AURAN)

HSP 1 Score: 59.7 bits (143), Expect = 7.930e-10
Identity = 28/40 (70.00%), Postives = 33/40 (82.50%), Query Frame = 1 
Query:    1 VVFELPDGSQGEQQFQLGQTVEVLKSFVASEFGIPMAGQA 120
            VVFELPDGS+GE+ F++G TVEVLKSFV  EF IPM  Q+
Sbjct:   79 VVFELPDGSEGEKHFKMGHTVEVLKSFVEEEFEIPMGVQS 118
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BLAST of mRNA_P-wetherbeei_contig1362.1.1 vs. uniprot
Match: A0A7S2HLV2_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2HLV2_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 9.410e-10
Identity = 26/40 (65.00%), Postives = 35/40 (87.50%), Query Frame = 1 
Query:    1 VVFELPDGSQGEQQFQLGQTVEVLKSFVASEFGIPMAGQA 120
            ++FELPDGS  + +FQ+GQTV+VLKS++ASE GIPMA Q+
Sbjct:   88 ILFELPDGSMVQNEFQMGQTVQVLKSYIASEVGIPMAQQS 127
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BLAST of mRNA_P-wetherbeei_contig1362.1.1 vs. uniprot
Match: A0A8J2SIH4_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SIH4_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 1.750e-9
Identity = 28/44 (63.64%), Postives = 34/44 (77.27%), Query Frame = 1 
Query:    1 VVFELPDGSQGEQQFQLGQTVEVLKSFVASEFGIPMAGQASLIG 132
            VVFELPDGS+GE+ F+LGQTVEVLK+FV  EF I M+     +G
Sbjct:   66 VVFELPDGSEGEKTFKLGQTVEVLKAFVEDEFEIDMSASRLYLG 109
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BLAST of mRNA_P-wetherbeei_contig1362.1.1 vs. uniprot
Match: A0A7S2D6F3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2D6F3_9STRA)

HSP 1 Score: 55.1 bits (131), Expect = 2.060e-8
Identity = 26/47 (55.32%), Postives = 33/47 (70.21%), Query Frame = 1 
Query:    1 VVFELPDGSQGEQQFQLGQTVEVLKSFVASEFGIPMAGQASLIGRCD 141
            VVF+LPDGS  E +F +GQ+VEVLKS++ASE GI M  Q   +   D
Sbjct:   35 VVFDLPDGSSVESEFAIGQSVEVLKSYIASECGIQMGDQQLFLEAAD 81
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BLAST of mRNA_P-wetherbeei_contig1362.1.1 vs. uniprot
Match: A0A485K463_9STRA (Aste57867_941 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485K463_9STRA)

HSP 1 Score: 51.6 bits (122), Expect = 3.960e-7
Identity = 22/44 (50.00%), Postives = 33/44 (75.00%), Query Frame = 1 
Query:    1 VVFELPDGSQGEQQFQLGQTVEVLKSFVASEFGIPMAGQASLIG 132
            + FELPD S+ +QQF+ GQTV VLKS++++EF +PM     ++G
Sbjct:   32 ITFELPDESEAQQQFKKGQTVAVLKSYLSTEFDLPMTSIKLMLG 75
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BLAST of mRNA_P-wetherbeei_contig1362.1.1 vs. uniprot
Match: A0A1V9Z6Q3_9STRA (Ubiquitin-like domain-containing protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9Z6Q3_9STRA)

HSP 1 Score: 50.4 bits (119), Expect = 5.000e-6
Identity = 20/36 (55.56%), Postives = 31/36 (86.11%), Query Frame = 1 
Query:    1 VVFELPDGSQGEQQFQLGQTVEVLKSFVASEFGIPM 108
            +VFELPDG++  ++F+ GQT+ VLKSF+++E+ IPM
Sbjct:   35 IVFELPDGTEAHEKFRKGQTIAVLKSFLSTEYDIPM 70
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1362.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
D8LMG4_ECTSI2.070e-1375.00Ubiquitin-like domain-containing protein n=1 Tax=E... [more]
A0A7S2RY85_9STRA1.970e-1279.49Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A482RPU6_9ARCH3.320e-1265.96Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
F0YBA1_AURAN7.930e-1070.00Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A7S2HLV2_9STRA9.410e-1065.00Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A8J2SIH4_9STRA1.750e-963.64Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S2D6F3_9STRA2.060e-855.32Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
A0A485K463_9STRA3.960e-750.00Aste57867_941 protein n=1 Tax=Aphanomyces stellatu... [more]
A0A1V9Z6Q3_9STRA5.000e-655.56Ubiquitin-like domain-containing protein n=1 Tax=T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1362contigP-wetherbeei_contig1362:106..378 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D8LMG4
Model size147
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Evalue3.4e-14
EggNOG OGs2D08N@1|root,2SD77@2759|Eukaryota
Ec32 ortholog descriptionUbiquitin-related domain
Ec32 orthologEc-05_002660.1
Cds size147
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185992.9820752-CDS-P-wetherbeei_contig1362:105..2101683185992.9820752-CDS-P-wetherbeei_contig1362:105..210Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1362 106..210 -
1683185992.9922028-CDS-P-wetherbeei_contig1362:336..3781683185992.9922028-CDS-P-wetherbeei_contig1362:336..378Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1362 337..378 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1362.1.1prot_P-wetherbeei_contig1362.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1362 106..378 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1362.1.1

>prot_P-wetherbeei_contig1362.1.1 ID=prot_P-wetherbeei_contig1362.1.1|Name=mRNA_P-wetherbeei_contig1362.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=49bp
VVFELPDGSQGEQQFQLGQTVEVLKSFVASEFGIPMAGQASLIGRCDL*
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mRNA from alignment at P-wetherbeei_contig1362:106..378-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1362.1.1 ID=mRNA_P-wetherbeei_contig1362.1.1|Name=mRNA_P-wetherbeei_contig1362.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=273bp|location=Sequence derived from alignment at P-wetherbeei_contig1362:106..378- (Phaeothamnion wetherbeei SAG_119_79)
GTCGTCTTCGAGCTCCCGGATGGCAGCCAGGGAGAGCAGCAGGTGCGTCA
AATTAAACCGCGGCTTTAAACTCTGTTATCGAGCGAACAGACTGCTGCGA
TCCAGGTAGACCACCTCTTGACCACGGGTAAACCTCTCCCTCCCGCTCAC
TGTGCGCGGACCCTGCAGTTTCAGCTTGGGCAAACCGTGGAGGTGCTGAA
GAGCTTTGTGGCTTCAGAATTCGGAATCCCGATGGCTGGACAGGCAAGTC
TAATAGGCAGGTGTGATTTGTAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1362:106..378-

>mRNA_P-wetherbeei_contig1362.1.1 ID=mRNA_P-wetherbeei_contig1362.1.1|Name=mRNA_P-wetherbeei_contig1362.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=147bp|location=Sequence derived from alignment at P-wetherbeei_contig1362:106..378- (Phaeothamnion wetherbeei SAG_119_79)
GTCGTCTTCGAGCTCCCGGATGGCAGCCAGGGAGAGCAGCAGTTTCAGCT
TGGGCAAACCGTGGAGGTGCTGAAGAGCTTTGTGGCTTCAGAATTCGGAA
TCCCGATGGCTGGACAGGCAAGTCTAATAGGCAGGTGTGATTTGTAG
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