mRNA_P-wetherbeei_contig13616.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig13616.1.1
Unique NamemRNA_P-wetherbeei_contig13616.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
[Close]
BLAST of mRNA_P-wetherbeei_contig13616.1.1 vs. uniprot
Match: A0A835YUV8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUV8_9STRA)

HSP 1 Score: 110 bits (275), Expect = 6.980e-25
Identity = 87/254 (34.25%), Postives = 120/254 (47.24%), Query Frame = 1 
Query:  109 MGRVRRYRRIKAIDPFSKRGKGGLGDGVEHELPPDRPNHIAQRFNEDGTRKRKKRPPLPLWIREELKNTAKDD---DGEAELAIDPSRKKAEEGPPRMK--PRGADESLKQFNQRIKRETAQMLIDEAKASSATXXXXXXXXXXXXXXXXXXXXXRIDEAQSDMRRKRSARGSGGDMEENNDGSDAEGRPRVRHXXXXXXXXXDDDAFPAPERIAFGEVVHEPPRFTVKPKLRGMAAAVASRGDGPAAQKPWVK 855
            MGRVRRY++ K +D  SKR +    D VEH LPPD  NH AQR   DGT KR+ +  LP W +EEL+ TAK +   D +       +    E   P++K  P+  DESL++FN+R+++  A+ L D AK +S+T                              RRK+         +    G   E + +V           D   F  PE I FGE VHEPPRF   PKL+G+   +A        +KPW++
Sbjct:    1 MGRVRRYKKAKNLDITSKRKRADKKD-VEHNLPPDTANHQAQRLKADGTLKRRAKQRLPEWAKEELRETAKREREADKQLLAGAAATPLPGENDTPKVKITPKRTDESLREFNERVRKVAAEALKDNAKRASSTV----------------------------ARRKKHLAEKSQKKKLQRQGLWEEHKMQVAREEQGIAEERD---FSKPEHIQFGETVHEPPRFQSMPKLKGLKPDLA--------EKPWLR 214
[Close]
BLAST of mRNA_P-wetherbeei_contig13616.1.1 vs. uniprot
Match: D7G2K9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G2K9_ECTSI)

HSP 1 Score: 93.6 bits (231), Expect = 2.010e-18
Identity = 64/141 (45.39%), Postives = 85/141 (60.28%), Query Frame = 1 
Query:  109 MGRVRRYRRIKAIDPFSKRGKGGL-------GDGVEHELPPDRPNHIAQRFN--EDGTRKRKK-RPPLPLWIREELKNTAKDDDGEAELAIDPSRKKAEEGPPR--MKPRGADESLKQFNQRIKRETAQMLIDEAKASSAT 495
            MGRVR+Y+++KA+DPF+K G GG        G  ++  LPPD  NH AQR N  E+G  K+KK +  LP W  EELK TAK      E   DP  K  +  P R  M+ +  DES++QFN+R++  TAQ+L DE K  S+T
Sbjct:    1 MGRVRKYKKVKAMDPFAKGGCGGRMGMGRKGGSDLDRNLPPDVKNHQAQRLNNLEEGKDKKKKNKRRLPQWAHEELKETAK---RVREEHADPGGKGRQPEPQRAAMEGKREDESMRQFNKRVREGTAQLLKDEFKEHSST 138
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig13616.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A835YUV8_9STRA6.980e-2534.25Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D7G2K9_ECTSI2.010e-1845.39Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig13616contigP-wetherbeei_contig13616:260..1565 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size889
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-11_002610.1
Cds size780
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185992.755037-UTR-P-wetherbeei_contig13616:259..3671683185992.755037-UTR-P-wetherbeei_contig13616:259..367Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig13616 260..367 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185992.7632844-CDS-P-wetherbeei_contig13616:367..5061683185992.7632844-CDS-P-wetherbeei_contig13616:367..506Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13616 368..506 +
1683185992.7703178-CDS-P-wetherbeei_contig13616:723..9881683185992.7703178-CDS-P-wetherbeei_contig13616:723..988Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13616 724..988 +
1683185992.7779186-CDS-P-wetherbeei_contig13616:1189..15651683185992.7779186-CDS-P-wetherbeei_contig13616:1189..1565Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13616 1190..1565 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig13616.1.1prot_P-wetherbeei_contig13616.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig13616 368..1565 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig13616.1.1

>prot_P-wetherbeei_contig13616.1.1 ID=prot_P-wetherbeei_contig13616.1.1|Name=mRNA_P-wetherbeei_contig13616.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=260bp
MGRVRRYRRIKAIDPFSKRGKGGLGDGVEHELPPDRPNHIAQRFNEDGTR
KRKKRPPLPLWIREELKNTAKDDDGEAELAIDPSRKKAEEGPPRMKPRGA
DESLKQFNQRIKRETAQMLIDEAKASSATVKKKKLYLQEKKKQKKLKKQQ
RIDEAQSDMRRKRSARGSGGDMEENNDGSDAEGRPRVRHRRRDGDGGGDD
DAFPAPERIAFGEVVHEPPRFTVKPKLRGMAAAVASRGDGPAAQKPWVKH
KLRVPDQDEG
back to top

mRNA from alignment at P-wetherbeei_contig13616:260..1565+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig13616.1.1 ID=mRNA_P-wetherbeei_contig13616.1.1|Name=mRNA_P-wetherbeei_contig13616.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1306bp|location=Sequence derived from alignment at P-wetherbeei_contig13616:260..1565+ (Phaeothamnion wetherbeei SAG_119_79)
GTGGAAAAGGCGGAAGGTGGAAGACAAGAGAGATAAGCCAGAGTTTCCCG
CGCGCGCTTTTTCGTCGTTTGGATTTTCAACAGGCACTGGAATCAGTCGG
ATAACACCATGGGCCGCGTGAGAAGGTATCGGCGGATCAAGGCGATCGAT
CCGTTTTCGAAGCGAGGAAAGGGCGGCTTGGGTGACGGAGTGGAGCACGA
GCTGCCACCTGACAGACCCAACCACATTGCGCAGCGCTTCAATGAAGGTG
CGATCTACAAGCTTAGGCGAGATACAGCAGACCACACACGCCTTTTTCCC
CCTCCATCTTTCCGTTTTCCTACTTAAGGTGATGGGCGCCTCTTTAGGTC
TCGGCATGGTCGCAATGCTTGGGATATACTTCATTCTAATCATCGTATTC
TCTCTGTAGCCTTTGTATCGATGTATCGGTGTCTCGCGCACCTCCCCCAC
ACACAACCAAATAGATGGCACAAGAAAGAGGAAAAAGCGGCCGCCGCTGC
CGCTCTGGATCCGTGAGGAGCTTAAAAACACCGCCAAGGACGATGATGGC
GAGGCGGAGCTCGCCATTGACCCGAGCCGCAAAAAGGCAGAGGAGGGCCC
GCCTCGCATGAAGCCGCGGGGTGCCGACGAGTCCCTGAAGCAATTCAACC
AGCGTATCAAGCGTGAGACGGCGCAGATGCTAATCGACGAGGCGAAGGCG
AGCAGCGCCACCGTCAAGAAGAAGAAGCTGTGAGTTCTATTGCAGAAATC
GACCTCTCCGACTATCTGATAGGTTTTCGAAAGTCTTAGGAAGCTTTCGC
TTGCTTTGTCGTCCTCTACGCGCTTTTGGTAGCCACGCCCTTGTGCCGCA
GTCGCGTCTCCCATCATCATCAGACTCCTTCGCTCACAGCAGGCGGCAGT
GAATGAATTAATTGCCTTCCATGTGTACAGGTACCTGCAAGAGAAAAAGA
AGCAGAAGAAACTGAAGAAGCAACAGCGGATTGACGAGGCGCAGTCGGAC
ATGCGCAGAAAACGCAGCGCCCGCGGCAGTGGCGGCGATATGGAAGAGAA
CAACGACGGCAGCGATGCCGAGGGCAGACCGCGCGTCCGTCATCGTCGCA
GGGACGGCGACGGCGGTGGAGACGACGACGCGTTTCCCGCGCCGGAGCGC
ATCGCGTTCGGCGAGGTTGTGCACGAGCCGCCGCGCTTCACGGTGAAGCC
CAAGTTGCGTGGGATGGCGGCGGCGGTAGCCAGCAGAGGCGATGGGCCTG
CGGCACAAAAGCCGTGGGTGAAGCACAAGCTGCGGGTGCCGGACCAGGAT
GAAGGT
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig13616:260..1565+

>mRNA_P-wetherbeei_contig13616.1.1 ID=mRNA_P-wetherbeei_contig13616.1.1|Name=mRNA_P-wetherbeei_contig13616.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=780bp|location=Sequence derived from alignment at P-wetherbeei_contig13616:260..1565+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGGCCGCGTGAGAAGGTATCGGCGGATCAAGGCGATCGATCCGTTTTC
GAAGCGAGGAAAGGGCGGCTTGGGTGACGGAGTGGAGCACGAGCTGCCAC
CTGACAGACCCAACCACATTGCGCAGCGCTTCAATGAAGATGGCACAAGA
AAGAGGAAAAAGCGGCCGCCGCTGCCGCTCTGGATCCGTGAGGAGCTTAA
AAACACCGCCAAGGACGATGATGGCGAGGCGGAGCTCGCCATTGACCCGA
GCCGCAAAAAGGCAGAGGAGGGCCCGCCTCGCATGAAGCCGCGGGGTGCC
GACGAGTCCCTGAAGCAATTCAACCAGCGTATCAAGCGTGAGACGGCGCA
GATGCTAATCGACGAGGCGAAGGCGAGCAGCGCCACCGTCAAGAAGAAGA
AGCTGTACCTGCAAGAGAAAAAGAAGCAGAAGAAACTGAAGAAGCAACAG
CGGATTGACGAGGCGCAGTCGGACATGCGCAGAAAACGCAGCGCCCGCGG
CAGTGGCGGCGATATGGAAGAGAACAACGACGGCAGCGATGCCGAGGGCA
GACCGCGCGTCCGTCATCGTCGCAGGGACGGCGACGGCGGTGGAGACGAC
GACGCGTTTCCCGCGCCGGAGCGCATCGCGTTCGGCGAGGTTGTGCACGA
GCCGCCGCGCTTCACGGTGAAGCCCAAGTTGCGTGGGATGGCGGCGGCGG
TAGCCAGCAGAGGCGATGGGCCTGCGGCACAAAAGCCGTGGGTGAAGCAC
AAGCTGCGGGTGCCGGACCAGGATGAAGGT
back to top