mRNA_P-wetherbeei_contig13612.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig13612.3.1
Unique NamemRNA_P-wetherbeei_contig13612.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig13612.3.1 vs. uniprot
Match: UPI0019C343FC (Acyl-CoA dehydrogenase n=2 Tax=Bacteria TaxID=2 RepID=UPI0019C343FC)

HSP 1 Score: 213 bits (541), Expect = 4.430e-69
Identity = 105/114 (92.11%), Postives = 112/114 (98.25%), Query Frame = 1 
Query:    1 FGRPLAANQLIQKKLADMLTEISIGLQSCLRLGRMKDEGSAAVEITSILKRNSCGKSLDIARMARDMMGGNGISDEFGVARHLVNLEVVNTYEGTHDIHALILGRAITGIQAFS 342
            FGRPLAANQLIQKKLADM TEI++GLQ CLRLGRMKD+G+A+VEITSILKRNSCGKSLDIAR+ARDMMGGNGISDEFGVARHLVNLEVVNTYEGTHDIHALILGRA+TGIQAFS
Sbjct:   39 FGRPLAANQLIQKKLADMETEITLGLQGCLRLGRMKDDGTASVEITSILKRNSCGKSLDIARLARDMMGGNGISDEFGVARHLVNLEVVNTYEGTHDIHALILGRAMTGIQAFS 152
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BLAST of mRNA_P-wetherbeei_contig13612.3.1 vs. uniprot
Match: UPI001BC80950 (Acyl-CoA dehydrogenase family protein n=2 Tax=Comamonadaceae TaxID=80864 RepID=UPI001BC80950)

HSP 1 Score: 216 bits (550), Expect = 5.960e-69
Identity = 107/114 (93.86%), Postives = 112/114 (98.25%), Query Frame = 1 
Query:    1 FGRPLAANQLIQKKLADMLTEISIGLQSCLRLGRMKDEGSAAVEITSILKRNSCGKSLDIARMARDMMGGNGISDEFGVARHLVNLEVVNTYEGTHDIHALILGRAITGIQAFS 342
            FGRPLAANQLIQKKLADMLTEIS+GLQ CLRLGRMKDEG+AAVEITSILKRNSCGK+LDIAR+ARDMMGGNGISDEFGVARHLVNLEVVNTYEGTHD+HALILGRAITGI AFS
Sbjct:  145 FGRPLAANQLIQKKLADMLTEISLGLQGCLRLGRMKDEGTAAVEITSILKRNSCGKALDIARLARDMMGGNGISDEFGVARHLVNLEVVNTYEGTHDVHALILGRAITGIAAFS 258
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BLAST of mRNA_P-wetherbeei_contig13612.3.1 vs. uniprot
Match: A0A1V6FV47_9PROT (Acyl-CoA dehydrogenase, short-chain specific n=2 Tax=Proteobacteria TaxID=1224 RepID=A0A1V6FV47_9PROT)

HSP 1 Score: 214 bits (544), Expect = 2.360e-68
Identity = 105/114 (92.11%), Postives = 112/114 (98.25%), Query Frame = 1 
Query:    1 FGRPLAANQLIQKKLADMLTEISIGLQSCLRLGRMKDEGSAAVEITSILKRNSCGKSLDIARMARDMMGGNGISDEFGVARHLVNLEVVNTYEGTHDIHALILGRAITGIQAFS 342
            FGRPLAANQLIQKKLADMLTEI++GLQ CLRLGRMKDEG+AAVEITSILKRNSCGK+LDIAR+ARDMMGGNGISDEFGVARHLVNLEVVNTYEGTHD+HALILGRAITGI AF+
Sbjct:  123 FGRPLAANQLIQKKLADMLTEITLGLQGCLRLGRMKDEGTAAVEITSILKRNSCGKALDIARLARDMMGGNGISDEFGVARHLVNLEVVNTYEGTHDVHALILGRAITGIAAFN 236
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BLAST of mRNA_P-wetherbeei_contig13612.3.1 vs. uniprot
Match: A0A1E4IMG7_9BURK (Acyl-CoA dehydrogenase n=1 Tax=Rubrivivax sp. SCN 71-131 TaxID=1660138 RepID=A0A1E4IMG7_9BURK)

HSP 1 Score: 218 bits (554), Expect = 8.070e-68
Identity = 108/114 (94.74%), Postives = 112/114 (98.25%), Query Frame = 1 
Query:    1 FGRPLAANQLIQKKLADMLTEISIGLQSCLRLGRMKDEGSAAVEITSILKRNSCGKSLDIARMARDMMGGNGISDEFGVARHLVNLEVVNTYEGTHDIHALILGRAITGIQAFS 342
            FGRPLAANQLIQKKLADMLTEI++GLQ CLRLGRMKDEGSAAVEITSI+KRNSCGKSLDIARMARDMMGGNGISDEFGVARHLVNLEVVNTYEGTHD+HALILGRAITGI AFS
Sbjct:  283 FGRPLAANQLIQKKLADMLTEITLGLQGCLRLGRMKDEGSAAVEITSIMKRNSCGKSLDIARMARDMMGGNGISDEFGVARHLVNLEVVNTYEGTHDVHALILGRAITGIAAFS 396
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BLAST of mRNA_P-wetherbeei_contig13612.3.1 vs. uniprot
Match: A0A3M5ESU2_PSEAI (Acyl-CoA_dh_1 domain-containing protein n=5 Tax=Proteobacteria TaxID=1224 RepID=A0A3M5ESU2_PSEAI)

HSP 1 Score: 206 bits (524), Expect = 6.070e-67
Identity = 100/113 (88.50%), Postives = 109/113 (96.46%), Query Frame = 1 
Query:    1 FGRPLAANQLIQKKLADMLTEISIGLQSCLRLGRMKDEGSAAVEITSILKRNSCGKSLDIARMARDMMGGNGISDEFGVARHLVNLEVVNTYEGTHDIHALILGRAITGIQAF 339
            FGRPLAANQLIQKKLADM TEI++ LQ CLRLGRMKDEG+AAVEITSI+KRNSCGK+LDIAR+ARDM+GGNGISDEFG+ARHLVNLEVVNTYEGTHD+HALILGRA TGIQAF
Sbjct:    7 FGRPLAANQLIQKKLADMQTEITLALQGCLRLGRMKDEGTAAVEITSIMKRNSCGKALDIARLARDMLGGNGISDEFGIARHLVNLEVVNTYEGTHDVHALILGRAQTGIQAF 119
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BLAST of mRNA_P-wetherbeei_contig13612.3.1 vs. uniprot
Match: A0A3B8PFG8_9GAMM (Acyl-CoA dehydrogenase (Fragment) n=2 Tax=Oceanospirillales TaxID=135619 RepID=A0A3B8PFG8_9GAMM)

HSP 1 Score: 206 bits (525), Expect = 6.740e-67
Identity = 100/114 (87.72%), Postives = 110/114 (96.49%), Query Frame = 1 
Query:    1 FGRPLAANQLIQKKLADMLTEISIGLQSCLRLGRMKDEGSAAVEITSILKRNSCGKSLDIARMARDMMGGNGISDEFGVARHLVNLEVVNTYEGTHDIHALILGRAITGIQAFS 342
            FGRPLAANQLIQKKLADM TEI++GLQ CLRLGRMKDEG+AAVEITSI+KRNSCGK+LDIAR+ARDM+GGNGISDEFGV RHLVNLEVVNTYEGTHD+HALILGRA TG+QAF+
Sbjct:   19 FGRPLAANQLIQKKLADMQTEITLGLQGCLRLGRMKDEGTAAVEITSIMKRNSCGKALDIARLARDMLGGNGISDEFGVIRHLVNLEVVNTYEGTHDVHALILGRAQTGLQAFT 132
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BLAST of mRNA_P-wetherbeei_contig13612.3.1 vs. uniprot
Match: A0A4P6X0G8_HYDPS (Acyl-CoA dehydrogenase n=25 Tax=Betaproteobacteria TaxID=28216 RepID=A0A4P6X0G8_HYDPS)

HSP 1 Score: 215 bits (547), Expect = 8.650e-67
Identity = 106/114 (92.98%), Postives = 112/114 (98.25%), Query Frame = 1 
Query:    1 FGRPLAANQLIQKKLADMLTEISIGLQSCLRLGRMKDEGSAAVEITSILKRNSCGKSLDIARMARDMMGGNGISDEFGVARHLVNLEVVNTYEGTHDIHALILGRAITGIQAFS 342
            FGRPLAANQLIQKKLADMLTEIS+GLQ CLRLGRMKDEG+AAVEITSILKRNSCGK+LDIARMARDMMGGNGISDE+GVARHLVNLEVVNTYEGTHD+HALILGRAITGI AF+
Sbjct:  281 FGRPLAANQLIQKKLADMLTEISLGLQGCLRLGRMKDEGTAAVEITSILKRNSCGKALDIARMARDMMGGNGISDEYGVARHLVNLEVVNTYEGTHDVHALILGRAITGIAAFA 394
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BLAST of mRNA_P-wetherbeei_contig13612.3.1 vs. uniprot
Match: A0A1L1PDL4_HYDIT (Glutaryl-CoA dehydrogenase n=16 Tax=Burkholderiales TaxID=80840 RepID=A0A1L1PDL4_HYDIT)

HSP 1 Score: 215 bits (547), Expect = 9.120e-67
Identity = 106/114 (92.98%), Postives = 112/114 (98.25%), Query Frame = 1 
Query:    1 FGRPLAANQLIQKKLADMLTEISIGLQSCLRLGRMKDEGSAAVEITSILKRNSCGKSLDIARMARDMMGGNGISDEFGVARHLVNLEVVNTYEGTHDIHALILGRAITGIQAFS 342
            FGRPLAANQLIQKKLADMLTEIS+GLQ CLRLGRMKDEG+AAVEITSILKRNSCGK+LDIAR+ARDMMGGNGISDEFGVARHLVNLEVVNTYEGTHD+HALILGRAITGI AF+
Sbjct:  284 FGRPLAANQLIQKKLADMLTEISLGLQGCLRLGRMKDEGTAAVEITSILKRNSCGKALDIARLARDMMGGNGISDEFGVARHLVNLEVVNTYEGTHDVHALILGRAITGIAAFN 397
[Close]
BLAST of mRNA_P-wetherbeei_contig13612.3.1 vs. uniprot
Match: A0A2N1WEA9_9GAMM (Acyl-CoA dehydrogenase (Fragment) n=2 Tax=Proteobacteria TaxID=1224 RepID=A0A2N1WEA9_9GAMM)

HSP 1 Score: 208 bits (530), Expect = 1.000e-66
Identity = 102/113 (90.27%), Postives = 109/113 (96.46%), Query Frame = 1 
Query:    1 FGRPLAANQLIQKKLADMLTEISIGLQSCLRLGRMKDEGSAAVEITSILKRNSCGKSLDIARMARDMMGGNGISDEFGVARHLVNLEVVNTYEGTHDIHALILGRAITGIQAF 339
            FGRPLAANQLIQKKLADM TEI++ LQ CLRLGRMKDEGSAAVEITSI+KRNSCGK+LD+ARMARDM+GGNGISDEFGVARHLVNLEVVNTYEGTHD+HALILGRA TGIQAF
Sbjct:   87 FGRPLAANQLIQKKLADMQTEITLALQGCLRLGRMKDEGSAAVEITSIMKRNSCGKALDVARMARDMLGGNGISDEFGVARHLVNLEVVNTYEGTHDVHALILGRAQTGIQAF 199
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BLAST of mRNA_P-wetherbeei_contig13612.3.1 vs. uniprot
Match: A0A7W2ETW3_9BURK (Acyl-CoA dehydrogenase n=3 Tax=unclassified Duganella TaxID=2636909 RepID=A0A7W2ETW3_9BURK)

HSP 1 Score: 214 bits (546), Expect = 1.130e-66
Identity = 104/114 (91.23%), Postives = 112/114 (98.25%), Query Frame = 1 
Query:    1 FGRPLAANQLIQKKLADMLTEISIGLQSCLRLGRMKDEGSAAVEITSILKRNSCGKSLDIARMARDMMGGNGISDEFGVARHLVNLEVVNTYEGTHDIHALILGRAITGIQAFS 342
            FGRPLAANQL+QKKLADMLTEI++GLQSCLRLGRMKDEG+AAVE+TSI+KRNSCGKSLDIARMARDMMGGNGISDEFGV RHLVNLEVVNTYEGTHD+HALILGRAITG+ AFS
Sbjct:  279 FGRPLAANQLVQKKLADMLTEITLGLQSCLRLGRMKDEGTAAVELTSIMKRNSCGKSLDIARMARDMMGGNGISDEFGVVRHLVNLEVVNTYEGTHDVHALILGRAITGLAAFS 392
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig13612.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI0019C343FC4.430e-6992.11Acyl-CoA dehydrogenase n=2 Tax=Bacteria TaxID=2 Re... [more]
UPI001BC809505.960e-6993.86Acyl-CoA dehydrogenase family protein n=2 Tax=Coma... [more]
A0A1V6FV47_9PROT2.360e-6892.11Acyl-CoA dehydrogenase, short-chain specific n=2 T... [more]
A0A1E4IMG7_9BURK8.070e-6894.74Acyl-CoA dehydrogenase n=1 Tax=Rubrivivax sp. SCN ... [more]
A0A3M5ESU2_PSEAI6.070e-6788.50Acyl-CoA_dh_1 domain-containing protein n=5 Tax=Pr... [more]
A0A3B8PFG8_9GAMM6.740e-6787.72Acyl-CoA dehydrogenase (Fragment) n=2 Tax=Oceanosp... [more]
A0A4P6X0G8_HYDPS8.650e-6792.98Acyl-CoA dehydrogenase n=25 Tax=Betaproteobacteria... [more]
A0A1L1PDL4_HYDIT9.120e-6792.98Glutaryl-CoA dehydrogenase n=16 Tax=Burkholderiale... [more]
A0A2N1WEA9_9GAMM1.000e-6690.27Acyl-CoA dehydrogenase (Fragment) n=2 Tax=Proteoba... [more]
A0A7W2ETW3_9BURK1.130e-6691.23Acyl-CoA dehydrogenase n=3 Tax=unclassified Dugane... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig13612contigP-wetherbeei_contig13612:1474..1818 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog1158292.JPOE01000002_gene2766
Preferred namegcdH
PFAMsAcyl-CoA_dh_1,Acyl-CoA_dh_M,Acyl-CoA_dh_N
Model size345
Max annot lvl28216|Betaproteobacteria
KEGG rclassRC00052,RC00156
KEGG koko:K00252
KEGG ReactionR02487,R02488,R10074
KEGG Pathwayko00071,ko00310,ko00362,ko00380,ko01100,ko01120,ko01130,map00071,map00310,map00362,map00380,map01100,map01120,map01130
KEGG ModuleM00032
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.5e-67
EggNOG OGsCOG1960@1|root,COG1960@2|Bacteria,1MUK0@1224|Proteobacteria,2VHDV@28216|Betaproteobacteria,1KIUX@119065|unclassified Burkholderiales
EC1.3.8.6
Descriptionacyl-CoA dehydrogenase
Cds size345
COG categoryC
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185992.5825708-CDS-P-wetherbeei_contig13612:1473..18181683185992.5825708-CDS-P-wetherbeei_contig13612:1473..1818Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13612 1474..1818 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig13612.3.1prot_P-wetherbeei_contig13612.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig13612 1474..1818 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig13612.3.1

>prot_P-wetherbeei_contig13612.3.1 ID=prot_P-wetherbeei_contig13612.3.1|Name=mRNA_P-wetherbeei_contig13612.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=115bp
FGRPLAANQLIQKKLADMLTEISIGLQSCLRLGRMKDEGSAAVEITSILK
RNSCGKSLDIARMARDMMGGNGISDEFGVARHLVNLEVVNTYEGTHDIHA
LILGRAITGIQAFS*
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mRNA from alignment at P-wetherbeei_contig13612:1474..1818-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig13612.3.1 ID=mRNA_P-wetherbeei_contig13612.3.1|Name=mRNA_P-wetherbeei_contig13612.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=345bp|location=Sequence derived from alignment at P-wetherbeei_contig13612:1474..1818- (Phaeothamnion wetherbeei SAG_119_79)
TTCGGCCGGCCGCTCGCGGCCAACCAGCTGATCCAGAAGAAGCTCGCCGA
CATGCTGACCGAGATCTCCATCGGACTGCAGTCGTGCCTGCGCCTCGGCC
GCATGAAGGACGAGGGCAGCGCGGCCGTCGAGATCACCTCCATCCTCAAG
CGCAACTCGTGCGGCAAGTCGCTCGACATCGCGCGCATGGCGCGCGACAT
GATGGGCGGCAACGGGATCTCCGACGAATTCGGCGTGGCGCGCCACCTGG
TGAACCTCGAGGTCGTGAACACCTACGAAGGCACGCACGACATCCACGCG
CTGATCCTAGGTCGCGCGATCACCGGCATCCAGGCGTTCAGCTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig13612:1474..1818-

>mRNA_P-wetherbeei_contig13612.3.1 ID=mRNA_P-wetherbeei_contig13612.3.1|Name=mRNA_P-wetherbeei_contig13612.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=345bp|location=Sequence derived from alignment at P-wetherbeei_contig13612:1474..1818- (Phaeothamnion wetherbeei SAG_119_79)
TTCGGCCGGCCGCTCGCGGCCAACCAGCTGATCCAGAAGAAGCTCGCCGA
CATGCTGACCGAGATCTCCATCGGACTGCAGTCGTGCCTGCGCCTCGGCC
GCATGAAGGACGAGGGCAGCGCGGCCGTCGAGATCACCTCCATCCTCAAG
CGCAACTCGTGCGGCAAGTCGCTCGACATCGCGCGCATGGCGCGCGACAT
GATGGGCGGCAACGGGATCTCCGACGAATTCGGCGTGGCGCGCCACCTGG
TGAACCTCGAGGTCGTGAACACCTACGAAGGCACGCACGACATCCACGCG
CTGATCCTAGGTCGCGCGATCACCGGCATCCAGGCGTTCAGCTGA
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