mRNA_P-wetherbeei_contig13612.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig13612.1.1
Unique NamemRNA_P-wetherbeei_contig13612.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig13612.1.1 vs. uniprot
Match: A0A537CV45_9PROT (YqgE/AlgH family protein n=3 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A537CV45_9PROT)

HSP 1 Score: 211 bits (536), Expect = 2.880e-66
Identity = 109/175 (62.29%), Postives = 131/175 (74.86%), Query Frame = 1
Query:    1 PMLPRLFAALLTAAAFWSSAACGQAPQASDEDAVFLVAHPSFRDPGYFHSVLIAAPIAGGEHIGVILNRPINRPLIALFPEHEPSKNVIDSVRFGGPFSVGTVVAVIKTDKSPGTDALPLMKNLYIAFRAATIDTVIEQTPNDARYFVGYVGWRRGELKTEIDRGLWSVLPANVD 525
            PM   L + LL AA+  ++ A  Q    S EDA+ LVAHP+FRD  Y  +VLIAAP   G H+GVILNRP  R L +LFPEHEPSK V+D V +GGPFS G +VA++K D +PG  A+ LMKN+Y+AFRA TID VIE TPN+ARYFVGYVGWR GELK+EIDRGLWSVL A+V+
Sbjct:   27 PMKKVLRSLLLLAASALAAPALSQ----SQEDAILLVAHPAFRDLEYRQTVLIAAPAPNGGHVGVILNRPTKRSLGSLFPEHEPSKKVVDPVYYGGPFSRGALVALVKADNTPGAGAVLLMKNVYLAFRANTIDHVIETTPNEARYFVGYVGWRPGELKSEIDRGLWSVLDADVE 197          
BLAST of mRNA_P-wetherbeei_contig13612.1.1 vs. uniprot
Match: A0A177QXW3_9PROT (Uncharacterized protein n=1 Tax=Betaproteobacteria bacterium SCGC AG-212-J23 TaxID=1799662 RepID=A0A177QXW3_9PROT)

HSP 1 Score: 207 bits (527), Expect = 4.560e-65
Identity = 105/169 (62.13%), Postives = 129/169 (76.33%), Query Frame = 1
Query:   19 FAALLTAAAFWSSAACGQAPQASDEDAVFLVAHPSFRDPGYFHSVLIAAPIAGGEHIGVILNRPINRPLIALFPEHEPSKNVIDSVRFGGPFSVGTVVAVIKTDKSPGTDALPLMKNLYIAFRAATIDTVIEQTPNDARYFVGYVGWRRGELKTEIDRGLWSVLPANVD 525
            FA LL AA    SA+  +A   S ++A+ LVAHP+FRD  Y  +VLIAAP   G H+GVI+NRP  R L +LFPEHEPSK V+D V +GGPFS G +VA++K D++PG+ ++ LM NLY+ FRA TID VIE TPNDARYFVGYVGWR GELK+EIDRGLWSVL A+V+
Sbjct:    3 FARLLVAALLMVSASIARAQ--SQDEAILLVAHPAFRDLEYRQTVLIAAPAPNGGHVGVIINRPTKRSLGSLFPEHEPSKKVVDPVFYGGPFSRGALVALVKADQTPGSGSVLLMHNLYMTFRANTIDHVIETTPNDARYFVGYVGWRPGELKSEIDRGLWSVLDADVE 169          
BLAST of mRNA_P-wetherbeei_contig13612.1.1 vs. uniprot
Match: UPI0019A5D0B7 (YqgE/AlgH family protein n=1 Tax=Candidatus Parcubacteria bacterium TaxID=2762014 RepID=UPI0019A5D0B7)

HSP 1 Score: 207 bits (528), Expect = 5.180e-65
Identity = 105/177 (59.32%), Postives = 133/177 (75.14%), Query Frame = 1
Query:    4 MLPRLFAALLTAAAF---WSSAACGQAPQASDEDAVFLVAHPSFRDPGYFHSVLIAAPIAGGEHIGVILNRPINRPLIALFPEHEPSKNVIDSVRFGGPFSVGTVVAVIKTDKSPGTDALPLMKNLYIAFRAATIDTVIEQTPNDARYFVGYVGWRRGELKTEIDRGLWSVLPANVD 525
            +L ++ AA+  AAA    WS+ A  Q     D+DA+ LVAHP+FRD  Y  +VL+AAP   G H+GVILNRP  R L +LFPEHEPSK V+D V +GGPFS G +VA++KTD +PGT +L LMKNL++AFR  TID VIE  PN+ARY+VGYVGWR GEL++EIDRG+WSVL A++D
Sbjct:    7 LLKKVLAAVALAAACAAPWSTPALAQ-----DDDALLLVAHPAFRDADYRQTVLLAAPGPSGGHVGVILNRPTRRSLSSLFPEHEPSKRVMDPVFYGGPFSRGALVALVKTDAAPGTGSLQLMKNLFMAFRVNTIDQVIESKPNEARYYVGYVGWRPGELRSEIDRGIWSVLGADMD 178          
BLAST of mRNA_P-wetherbeei_contig13612.1.1 vs. uniprot
Match: A0A1F3Y9V5_9PROT (Uncharacterized protein n=1 Tax=Betaproteobacteria bacterium RBG_16_66_20 TaxID=1797479 RepID=A0A1F3Y9V5_9PROT)

HSP 1 Score: 206 bits (525), Expect = 1.390e-64
Identity = 102/165 (61.82%), Postives = 124/165 (75.15%), Query Frame = 1
Query:   31 LTAAAFWSSAACGQAPQASDEDAVFLVAHPSFRDPGYFHSVLIAAPIAGGEHIGVILNRPINRPLIALFPEHEPSKNVIDSVRFGGPFSVGTVVAVIKTDKSPGTDALPLMKNLYIAFRAATIDTVIEQTPNDARYFVGYVGWRRGELKTEIDRGLWSVLPANVD 525
            L AAA W + A      A D+DA+ LVAHP+FRD  Y  +VL+AAP   G H+GVILNRP  RPL +LFP+HEPSK VI+ V +GGPFS G +VA++KTD +PG  ++ LMKNLY+AFR  TID VIE  PNDARY+VGYVGWR GELK EIDRG+WSVL  ++D
Sbjct:   14 LFAAASWPATAL-----AEDDDAMLLVAHPAFRDLDYRQTVLLAAPGPSGGHVGVILNRPTRRPLSSLFPQHEPSKKVIEPVYYGGPFSRGALVALVKTDAAPGAGSVQLMKNLYMAFRVNTIDQVIESRPNDARYYVGYVGWRPGELKAEIDRGIWSVLGPDLD 173          
BLAST of mRNA_P-wetherbeei_contig13612.1.1 vs. uniprot
Match: A0A521YMU9_9PROT (YqgE/AlgH family protein n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A521YMU9_9PROT)

HSP 1 Score: 206 bits (523), Expect = 1.430e-64
Identity = 97/147 (65.99%), Postives = 119/147 (80.95%), Query Frame = 1
Query:   85 SDEDAVFLVAHPSFRDPGYFHSVLIAAPIAGGEHIGVILNRPINRPLIALFPEHEPSKNVIDSVRFGGPFSVGTVVAVIKTDKSPGTDALPLMKNLYIAFRAATIDTVIEQTPNDARYFVGYVGWRRGELKTEIDRGLWSVLPANVD 525
            + E+A+ LVAHP+FRD  Y  +VLIAAP   G H+GVILNRP  R L +LFPEHEPSK VID V +GGPFS G +VA++ +D +PG  ++PLMK+LY+AFRA TID VIE TPN+ARYFVGYVGWR GELK+EIDRGLWSV+ A++D
Sbjct:   22 AQEEAMLLVAHPAFRDLEYRQTVLIAAPAPNGGHVGVILNRPTRRSLASLFPEHEPSKKVIDPVYYGGPFSRGALVALVHSDNAPGAGSVPLMKHLYLAFRANTIDHVIETTPNEARYFVGYVGWRPGELKSEIDRGLWSVVDADLD 168          
BLAST of mRNA_P-wetherbeei_contig13612.1.1 vs. uniprot
Match: A0A537AAD9_9PROT (YqgE/AlgH family protein n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A537AAD9_9PROT)

HSP 1 Score: 205 bits (522), Expect = 2.230e-64
Identity = 97/151 (64.24%), Postives = 120/151 (79.47%), Query Frame = 1
Query:   73 APQASDEDAVFLVAHPSFRDPGYFHSVLIAAPIAGGEHIGVILNRPINRPLIALFPEHEPSKNVIDSVRFGGPFSVGTVVAVIKTDKSPGTDALPLMKNLYIAFRAATIDTVIEQTPNDARYFVGYVGWRRGELKTEIDRGLWSVLPANVD 525
            AP  + ++A+ L+AHP+FRD  Y  +VLIAAP   G H+GVILNRP  R L +LFPEHEPSK V+D V +GGPFS G +VA++K D SPG  ++PLMK+LY+AFRA TID VIE TPN+ARY+VGYVGWR GELK+EIDRGLWSV  A++D
Sbjct:   18 APALAQDEAMILIAHPAFRDLEYRQTVLIAAPAPNGGHVGVILNRPTRRSLGSLFPEHEPSKKVLDPVYYGGPFSRGALVALVKADHSPGAGSVPLMKDLYLAFRANTIDHVIESTPNEARYYVGYVGWRPGELKSEIDRGLWSVQNADLD 168          
BLAST of mRNA_P-wetherbeei_contig13612.1.1 vs. uniprot
Match: A0A536XXJ0_9PROT (YqgE/AlgH family protein n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A536XXJ0_9PROT)

HSP 1 Score: 205 bits (521), Expect = 2.880e-64
Identity = 101/160 (63.12%), Postives = 123/160 (76.88%), Query Frame = 1
Query:   46 FWSSAACGQAPQASDEDAVFLVAHPSFRDPGYFHSVLIAAPIAGGEHIGVILNRPINRPLIALFPEHEPSKNVIDSVRFGGPFSVGTVVAVIKTDKSPGTDALPLMKNLYIAFRAATIDTVIEQTPNDARYFVGYVGWRRGELKTEIDRGLWSVLPANVD 525
            F  +AA   AP A+ ++A+ LVAHP FRD  Y  +VLIAAP   G H+GVILNRP  R L +LFPEHEPSK V+D V +GGPFS G +VA++    SPG  ++PLMK+LY+AFRA TID VIE TPNDARY+VGYVGWR GELK+EIDRGLW+VL A+V+
Sbjct:    9 FALAAAALAAPAAAQDEAMILVAHPLFRDLDYRQTVLIAAPAPNGGHVGVILNRPTKRSLGSLFPEHEPSKKVLDPVYYGGPFSRGALVALVHAHDSPGPGSVPLMKDLYLAFRANTIDHVIESTPNDARYYVGYVGWRPGELKSEIDRGLWTVLNADVE 168          
BLAST of mRNA_P-wetherbeei_contig13612.1.1 vs. uniprot
Match: A0A521V8Z7_9PROT (YqgE/AlgH family protein n=3 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A521V8Z7_9PROT)

HSP 1 Score: 205 bits (521), Expect = 5.980e-64
Identity = 101/161 (62.73%), Postives = 125/161 (77.64%), Query Frame = 1
Query:   52 SSAACGQAPQ---ASDEDAVFLVAHPSFRDPGYFHSVLIAAPIAGGEHIGVILNRPINRPLIALFPEHEPSKNVIDSVRFGGPFSVGTVVAVIKTDKSPGTDALPLMKNLYIAFRAATIDTVIEQTPNDARYFVGYVGWRRGELKTEIDRGLWSVLPANVD 525
            ++AA   APQ   A DE+A+ LVAHP+FRD  Y  +VLIAAP   G H+GVILNRP  R L +LFPEHEPSK V++ V FGGPFS G +VA++K D  PG  ++ LMK+LY+ FRA TID+VIE TPNDARY+VGYVGWR GEL++EIDRGLWSVL A+++
Sbjct:   22 AAAALLGAPQLAAAQDEEAMLLVAHPAFRDSDYRQTVLIAAPAPNGGHVGVILNRPTRRSLGSLFPEHEPSKKVVEPVYFGGPFSRGALVALVKADAEPGAGSVLLMKSLYLTFRANTIDSVIESTPNDARYYVGYVGWRPGELRSEIDRGLWSVLSADLE 182          
BLAST of mRNA_P-wetherbeei_contig13612.1.1 vs. uniprot
Match: A0A1F4F3V9_9PROT (Uncharacterized protein n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_65_14 TaxID=1797501 RepID=A0A1F4F3V9_9PROT)

HSP 1 Score: 203 bits (516), Expect = 1.320e-63
Identity = 99/160 (61.88%), Postives = 123/160 (76.88%), Query Frame = 1
Query:   46 FWSSAACGQAPQASDEDAVFLVAHPSFRDPGYFHSVLIAAPIAGGEHIGVILNRPINRPLIALFPEHEPSKNVIDSVRFGGPFSVGTVVAVIKTDKSPGTDALPLMKNLYIAFRAATIDTVIEQTPNDARYFVGYVGWRRGELKTEIDRGLWSVLPANVD 525
            F+  ++ G A     EDA+ LVAHP+FRD  Y  +VLIAAP   G H+GVILNRP  R L +LFP+HEPSK V++ V +GGPFS G +VA+++ D +PG+ ++ LMKNLY+AFRA TID VIE TPN+ARYFVGYVGWR GELK+EIDRGLWSV+ A VD
Sbjct:    2 FFVLSSSGTALAQPHEDAMLLVAHPAFRDLEYRQTVLIAAPAPNGGHVGVILNRPTRRSLGSLFPDHEPSKKVVEPVFYGGPFSRGALVALVRADNAPGSGSVLLMKNLYLAFRANTIDHVIETTPNEARYFVGYVGWRPGELKSEIDRGLWSVINAEVD 161          
BLAST of mRNA_P-wetherbeei_contig13612.1.1 vs. uniprot
Match: A0A1F4F8R0_9PROT (Uncharacterized protein n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_68_20 TaxID=1797505 RepID=A0A1F4F8R0_9PROT)

HSP 1 Score: 201 bits (510), Expect = 1.480e-62
Identity = 96/149 (64.43%), Postives = 116/149 (77.85%), Query Frame = 1
Query:   79 QASDEDAVFLVAHPSFRDPGYFHSVLIAAPIAGGEHIGVILNRPINRPLIALFPEHEPSKNVIDSVRFGGPFSVGTVVAVIKTDKSPGTDALPLMKNLYIAFRAATIDTVIEQTPNDARYFVGYVGWRRGELKTEIDRGLWSVLPANVD 525
            Q   ++A+ LVAHP+FRD  Y  SVLIAAP   G H+GVILNRP  R L +LFPEHEPSK V + V +GGPFS G +VA++KT  +PG   +PLMKNLY+AFRA TID +IE TPN+ARYFVGYVGWR GELK+EIDRGLWSV  A+++
Sbjct:   23 QVQQDEALVLVAHPAFRDLDYRQSVLIAAPAPNGGHVGVILNRPTRRSLGSLFPEHEPSKKVAEPVYYGGPFSRGALVALVKTQANPGIGTVPLMKNLYLAFRANTIDHIIEATPNEARYFVGYVGWRPGELKSEIDRGLWSVHGADLE 171          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig13612.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A537CV45_9PROT2.880e-6662.29YqgE/AlgH family protein n=3 Tax=Betaproteobacteri... [more]
A0A177QXW3_9PROT4.560e-6562.13Uncharacterized protein n=1 Tax=Betaproteobacteria... [more]
UPI0019A5D0B75.180e-6559.32YqgE/AlgH family protein n=1 Tax=Candidatus Parcub... [more]
A0A1F3Y9V5_9PROT1.390e-6461.82Uncharacterized protein n=1 Tax=Betaproteobacteria... [more]
A0A521YMU9_9PROT1.430e-6465.99YqgE/AlgH family protein n=1 Tax=Betaproteobacteri... [more]
A0A537AAD9_9PROT2.230e-6464.24YqgE/AlgH family protein n=1 Tax=Betaproteobacteri... [more]
A0A536XXJ0_9PROT2.880e-6463.13YqgE/AlgH family protein n=1 Tax=Betaproteobacteri... [more]
A0A521V8Z7_9PROT5.980e-6462.73YqgE/AlgH family protein n=3 Tax=Betaproteobacteri... [more]
A0A1F4F3V9_9PROT1.320e-6361.88Uncharacterized protein n=1 Tax=Betaproteobacteria... [more]
A0A1F4F8R0_9PROT1.480e-6264.43Uncharacterized protein n=1 Tax=Betaproteobacteria... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig13612contigP-wetherbeei_contig13612:1..525 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog1267535.KB906767_gene5521
PFAMsDUF179
Model size525
Max annot lvl57723|Acidobacteria
Hectar predicted targeting categorysignal peptide
Exons1
Evalue2.54e-19
EggNOG OGsCOG1678@1|root,COG1678@2|Bacteria,3Y8TX@57723|Acidobacteria
DescriptionUncharacterized ACR, COG1678
Cds size522
COG categoryK
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185992.505919-CDS-P-wetherbeei_contig13612:0..5221683185992.505919-CDS-P-wetherbeei_contig13612:0..522Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13612 1..522 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185992.514721-UTR-P-wetherbeei_contig13612:522..5251683185992.514721-UTR-P-wetherbeei_contig13612:522..525Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig13612 523..525 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig13612.1.1prot_P-wetherbeei_contig13612.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig13612 1..522 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig13612.1.1

>prot_P-wetherbeei_contig13612.1.1 ID=prot_P-wetherbeei_contig13612.1.1|Name=mRNA_P-wetherbeei_contig13612.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=174bp
MLPRLFAALLTAAAFWSSAACGQAPQASDEDAVFLVAHPSFRDPGYFHSV
LIAAPIAGGEHIGVILNRPINRPLIALFPEHEPSKNVIDSVRFGGPFSVG
TVVAVIKTDKSPGTDALPLMKNLYIAFRAATIDTVIEQTPNDARYFVGYV
GWRRGELKTEIDRGLWSVLPANVD
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mRNA from alignment at P-wetherbeei_contig13612:1..525-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig13612.1.1 ID=mRNA_P-wetherbeei_contig13612.1.1|Name=mRNA_P-wetherbeei_contig13612.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=525bp|location=Sequence derived from alignment at P-wetherbeei_contig13612:1..525- (Phaeothamnion wetherbeei SAG_119_79)
CCGATGCTGCCCCGCCTCTTCGCCGCATTACTCACCGCAGCCGCCTTCTG GAGCAGTGCGGCCTGCGGGCAGGCACCGCAGGCGTCCGACGAGGACGCGG TCTTCCTCGTCGCGCACCCGTCCTTCCGCGATCCCGGCTATTTCCATTCG GTGCTGATCGCGGCACCCATCGCCGGCGGGGAACATATCGGGGTGATCCT CAATCGCCCGATCAATCGACCGCTGATCGCTTTGTTCCCCGAGCACGAAC CTTCTAAAAACGTTATCGATTCAGTACGTTTTGGGGGTCCCTTTTCTGTC GGCACGGTAGTGGCAGTAATAAAAACTGACAAGAGCCCCGGAACAGATGC ACTCCCGCTGATGAAGAACCTTTACATCGCGTTCCGTGCCGCCACCATCG ACACGGTGATCGAACAGACCCCGAATGACGCACGCTACTTCGTGGGCTAC GTGGGCTGGCGCCGCGGCGAACTCAAAACCGAGATCGACCGCGGGCTGTG GAGCGTCCTGCCCGCGAACGTCGAC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig13612:1..525-

>mRNA_P-wetherbeei_contig13612.1.1 ID=mRNA_P-wetherbeei_contig13612.1.1|Name=mRNA_P-wetherbeei_contig13612.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=522bp|location=Sequence derived from alignment at P-wetherbeei_contig13612:1..525- (Phaeothamnion wetherbeei SAG_119_79)
ATGCTGCCCCGCCTCTTCGCCGCATTACTCACCGCAGCCGCCTTCTGGAG
CAGTGCGGCCTGCGGGCAGGCACCGCAGGCGTCCGACGAGGACGCGGTCT
TCCTCGTCGCGCACCCGTCCTTCCGCGATCCCGGCTATTTCCATTCGGTG
CTGATCGCGGCACCCATCGCCGGCGGGGAACATATCGGGGTGATCCTCAA
TCGCCCGATCAATCGACCGCTGATCGCTTTGTTCCCCGAGCACGAACCTT
CTAAAAACGTTATCGATTCAGTACGTTTTGGGGGTCCCTTTTCTGTCGGC
ACGGTAGTGGCAGTAATAAAAACTGACAAGAGCCCCGGAACAGATGCACT
CCCGCTGATGAAGAACCTTTACATCGCGTTCCGTGCCGCCACCATCGACA
CGGTGATCGAACAGACCCCGAATGACGCACGCTACTTCGTGGGCTACGTG
GGCTGGCGCCGCGGCGAACTCAAAACCGAGATCGACCGCGGGCTGTGGAG
CGTCCTGCCCGCGAACGTCGAC
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