mRNA_P-wetherbeei_contig13607.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig13607.2.1
Unique NamemRNA_P-wetherbeei_contig13607.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig13607.2.1 vs. uniprot
Match: A0A6N7FN44_9ACTN (Sigma70_r4_2 domain-containing protein (Fragment) n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A6N7FN44_9ACTN)

HSP 1 Score: 100 bits (249), Expect = 1.050e-24
Identity = 52/95 (54.74%), Postives = 65/95 (68.42%), Query Frame = 1 
Query:    1 GWVYRVALNWANSTLRRRGGPRRTLHQISLGAIEP-ADPKLMAAIGQLDLDRRAVVVCRFFLELSELETARALGIRPGTVKSRLHRALHQLSVEL 282
            GWVYRV LNWA S LRRR    R   +     + P A+P ++AA+ +L + +R+V+VCRF+L LSE ETA ALG+RPGTVKSRLHR L  L   L
Sbjct:   64 GWVYRVGLNWATSVLRRRVRAPRPPAERGPSDVGPLAEPDVLAALHELGVKQRSVIVCRFYLGLSEAETAEALGVRPGTVKSRLHRGLRHLQSRL 158
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BLAST of mRNA_P-wetherbeei_contig13607.2.1 vs. uniprot
Match: A0A6J6C961_9ZZZZ (Unannotated protein n=2 Tax=root TaxID=1 RepID=A0A6J6C961_9ZZZZ)

HSP 1 Score: 93.6 bits (231), Expect = 1.390e-21
Identity = 53/101 (52.48%), Postives = 64/101 (63.37%), Query Frame = 1 
Query:    1 GWVYRVALNWANSTLRRRGGPRRT-----LHQISLGAIEPADPKLMAAIGQLDLDRRAVVVCRFFLELSELETARALGIRPGTVKSRLHRALHQLSVELRP 288
            GWVYRV LNW+ S +RRR   RRT          +     +DP +  A+ +L +D+RAVVVCR  L LSEL+TA  LGIRPGTVKSRL RAL +L   L P
Sbjct:  103 GWVYRVGLNWSRSVVRRR---RRTPPIWIARPADVAPTATSDPSIDRALDRLSVDQRAVVVCRLLLGLSELQTADTLGIRPGTVKSRLARALERLQPLLAP 200
[Close]
BLAST of mRNA_P-wetherbeei_contig13607.2.1 vs. uniprot
Match: A0A7W1E1I8_9ACTN (RNA polymerase sigma factor n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7W1E1I8_9ACTN)

HSP 1 Score: 92.8 bits (229), Expect = 2.020e-21
Identity = 49/95 (51.58%), Postives = 63/95 (66.32%), Query Frame = 1 
Query:    1 GWVYRVALNWANSTLRRRGGPRRTLHQISLGAIEP-ADPKLMAAIGQLDLDRRAVVVCRFFLELSELETARALGIRPGTVKSRLHRALHQLSVEL 282
            GWVYRV LNWA S +RRR      +H+  L  + P A+P + AA+ +LDL  R+VVVCR++L++S  E A AL   PGTVKSRLHRA+  L   L
Sbjct:   90 GWVYRVGLNWATSVVRRRWRRDTEVHR-DLSDVGPIAEPAVRAALAELDLRHRSVVVCRYYLQMSVAEIAAALNTAPGTVKSRLHRAMRTLQSRL 183
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BLAST of mRNA_P-wetherbeei_contig13607.2.1 vs. uniprot
Match: A0A2E7A6B1_9ACTN (RNA polymerase subunit sigma n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2E7A6B1_9ACTN)

HSP 1 Score: 88.6 bits (218), Expect = 1.450e-19
Identity = 53/97 (54.64%), Postives = 59/97 (60.82%), Query Frame = 1 
Query:    1 GWVYRVALNWANSTLRRRGGPRRTLHQISLGAI---EPADPKLMAAIGQLDLDRRAVVVCRFFLELSELETARALGIRPGTVKSRLHRALHQLSVEL 282
            GWVYRV +NWA S LRR    R     ++ G     E  D  L  A+G L    R VVV RFF+E S  ETA ALGIRPGTVKSRL RAL QL+ EL
Sbjct:  103 GWVYRVGMNWARSWLRRARREREKRPLLAEGEFAEDEIVDVDLERALGSLTPTHRTVVVARFFMEWSVDETAEALGIRPGTVKSRLSRALSQLAGEL 199
[Close]
BLAST of mRNA_P-wetherbeei_contig13607.2.1 vs. uniprot
Match: A0A2E9XBY5_9ACTN (RNA polymerase subunit sigma n=2 Tax=Actinobacteria TaxID=201174 RepID=A0A2E9XBY5_9ACTN)

HSP 1 Score: 87.4 bits (215), Expect = 2.450e-19
Identity = 55/97 (56.70%), Postives = 61/97 (62.89%), Query Frame = 1 
Query:    1 GWVYRVALNWANSTLRRRGGP---RRTLHQISLGAIEPADPKLMAAIGQLDLDRRAVVVCRFFLELSELETARALGIRPGTVKSRLHRALHQLSVEL 282
            GWVYRVA+NWA S LRRR      R  L+  S    E  D  L  A+  L    RAVVV RFF++ S  ETA ALGIRPGTVKSRL+RAL QL V L
Sbjct:   80 GWVYRVAMNWARSWLRRRRREIEKRPLLNFDSSFVDELIDVDLERALDTLSPQSRAVVVARFFMDWSIDETADALGIRPGTVKSRLNRALKQLEVRL 176
[Close]
BLAST of mRNA_P-wetherbeei_contig13607.2.1 vs. uniprot
Match: A0A350RJF0_9ACTN (RNA polymerase subunit sigma n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A350RJF0_9ACTN)

HSP 1 Score: 87.0 bits (214), Expect = 5.700e-19
Identity = 52/97 (53.61%), Postives = 59/97 (60.82%), Query Frame = 1 
Query:    1 GWVYRVALNWANSTLRRRGGPRRTLHQISLGAI---EPADPKLMAAIGQLDLDRRAVVVCRFFLELSELETARALGIRPGTVKSRLHRALHQLSVEL 282
            GWVYRV +NWA S LRR    R     ++ G     E  D  L  A+  L    R VVV RFF+E S  ETA ALGIRPGTVKSRL RAL+QL+ EL
Sbjct:  103 GWVYRVGMNWARSWLRRARRERERRPLLAKGEFAEDEIVDVDLERALESLSPTHRTVVVARFFMEWSVDETAEALGIRPGTVKSRLSRALNQLAGEL 199
[Close]
BLAST of mRNA_P-wetherbeei_contig13607.2.1 vs. uniprot
Match: A0A2E4GQR4_9ACTN (Sigma70_r4_2 domain-containing protein n=4 Tax=Acidimicrobiales TaxID=84993 RepID=A0A2E4GQR4_9ACTN)

HSP 1 Score: 86.7 bits (213), Expect = 7.410e-19
Identity = 52/97 (53.61%), Postives = 59/97 (60.82%), Query Frame = 1 
Query:    1 GWVYRVALNWANSTLRRRGGPRRT---LHQISLGAIEPADPKLMAAIGQLDLDRRAVVVCRFFLELSELETARALGIRPGTVKSRLHRALHQLSVEL 282
            GWVYRVA+NWA S LRR    R     L +      +  D  L  A+  L    R VVV RFF+E S  ETA ALGIRPGTVKSRL RAL+QL+ EL
Sbjct:   99 GWVYRVAMNWARSWLRRARREREKRPLLVKAEFAEDQIVDVDLERALESLAATHRTVVVARFFMEWSVEETAEALGIRPGTVKSRLSRALNQLAGEL 195
[Close]
BLAST of mRNA_P-wetherbeei_contig13607.2.1 vs. uniprot
Match: A0A7W0SHC8_9ACTN (Sigma-70 family RNA polymerase sigma factor n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A7W0SHC8_9ACTN)

HSP 1 Score: 85.9 bits (211), Expect = 9.280e-19
Identity = 48/95 (50.53%), Postives = 62/95 (65.26%), Query Frame = 1 
Query:    1 GWVYRVALNWANSTLRRRGGPRRTLHQISLGA-IEPADPKLMAAIGQLDLDRRAVVVCRFFLELSELETARALGIRPGTVKSRLHRALHQLSVEL 282
            GWVYRV LNWA S LR+R     +     L   +  +DP L   +  L L+ R+VVV RF+L+ S  + A ALGIRPGTVKSRLHRA+++L V+L
Sbjct:   94 GWVYRVGLNWARSRLRKRKREILSDQPPELSTELTFSDPDLERTVMALPLEARSVVVLRFYLDWSTDDVADALGIRPGTVKSRLHRAMNELRVQL 188
[Close]
BLAST of mRNA_P-wetherbeei_contig13607.2.1 vs. uniprot
Match: A0A6C7E475_ILUCY (Putative RNA polymerase ECF subfamily sigma factor n=1 Tax=Ilumatobacter coccineus (strain NBRC 103263 / KCTC 29153 / YM16-304) TaxID=1313172 RepID=A0A6C7E475_ILUCY)

HSP 1 Score: 85.1 bits (209), Expect = 1.350e-18
Identity = 55/100 (55.00%), Postives = 61/100 (61.00%), Query Frame = 1 
Query:    1 GWVYRVALNWAN----STLRRRGGPRRTLHQISLGAIEP--ADPKLMAAIGQLDLDRRAVVVCRFFLELSELETARALGIRPGTVKSRLHRALHQLSVEL 282
            GWVYRV LN A     S LRRR  P    HQ +  A +   ADP + AA+  L  D RAVVVCRF L  SE +TA AL IRPGTVKSRL RAL +L   L
Sbjct:   74 GWVYRVGLNHARNGVRSMLRRRQQPP---HQTTAPAADASVADPAIAAALSTLSHDHRAVVVCRFLLGWSEQQTADALSIRPGTVKSRLSRALSKLERRL 170
[Close]
BLAST of mRNA_P-wetherbeei_contig13607.2.1 vs. uniprot
Match: A0A2E8GL71_9ACTN (Sigma70_r4_2 domain-containing protein n=2 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2E8GL71_9ACTN)

HSP 1 Score: 85.9 bits (211), Expect = 1.620e-18
Identity = 56/98 (57.14%), Postives = 63/98 (64.29%), Query Frame = 1 
Query:    1 GWVYRVALNWANSTLRR--RGGPRRTLHQISLGAIEP--ADPKLMAAIGQLDLDRRAVVVCRFFLELSELETARALGIRPGTVKSRLHRALHQLSVEL 282
            GWVYRVA+NWA S LRR  R   +R L  +   AIE    D  L  A+G L    R VVV RFF++ S  ETA ALGIRPGTVKSRL RAL QL+ EL
Sbjct:  104 GWVYRVAMNWARSWLRRTRRERDKRPL-LVKHEAIEDQLVDVDLERALGGLSPGHRTVVVARFFMDWSVDETADALGIRPGTVKSRLSRALDQLANEL 200
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig13607.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6N7FN44_9ACTN1.050e-2454.74Sigma70_r4_2 domain-containing protein (Fragment) ... [more]
A0A6J6C961_9ZZZZ1.390e-2152.48Unannotated protein n=2 Tax=root TaxID=1 RepID=A0A... [more]
A0A7W1E1I8_9ACTN2.020e-2151.58RNA polymerase sigma factor n=1 Tax=Actinomycetia ... [more]
A0A2E7A6B1_9ACTN1.450e-1954.64RNA polymerase subunit sigma n=1 Tax=Acidimicrobia... [more]
A0A2E9XBY5_9ACTN2.450e-1956.70RNA polymerase subunit sigma n=2 Tax=Actinobacteri... [more]
A0A350RJF0_9ACTN5.700e-1953.61RNA polymerase subunit sigma n=1 Tax=Acidimicrobia... [more]
A0A2E4GQR4_9ACTN7.410e-1953.61Sigma70_r4_2 domain-containing protein n=4 Tax=Aci... [more]
A0A7W0SHC8_9ACTN9.280e-1950.53Sigma-70 family RNA polymerase sigma factor n=1 Ta... [more]
A0A6C7E475_ILUCY1.350e-1855.00Putative RNA polymerase ECF subfamily sigma factor... [more]
A0A2E8GL71_9ACTN1.620e-1857.14Sigma70_r4_2 domain-containing protein n=2 Tax=Aci... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig13607contigP-wetherbeei_contig13607:1508..1816 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog1313172.YM304_11260
PFAMsSigma70_r4_2
Model size309
Max annot lvl2|Bacteria
KEGG koko:K03088
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.22e-19
EggNOG OGsCOG1595@1|root,COG1595@2|Bacteria
DescriptionDNA-templated transcription, initiation
Cds size309
COG categoryK
BRITEko00000,ko03021
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185992.2831047-CDS-P-wetherbeei_contig13607:1507..18161683185992.2831047-CDS-P-wetherbeei_contig13607:1507..1816Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13607 1508..1816 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig13607.2.1prot_P-wetherbeei_contig13607.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig13607 1508..1816 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig13607.2.1

>prot_P-wetherbeei_contig13607.2.1 ID=prot_P-wetherbeei_contig13607.2.1|Name=mRNA_P-wetherbeei_contig13607.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=103bp
GWVYRVALNWANSTLRRRGGPRRTLHQISLGAIEPADPKLMAAIGQLDLD
RRAVVVCRFFLELSELETARALGIRPGTVKSRLHRALHQLSVELRPRTVE
EA*
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mRNA from alignment at P-wetherbeei_contig13607:1508..1816-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig13607.2.1 ID=mRNA_P-wetherbeei_contig13607.2.1|Name=mRNA_P-wetherbeei_contig13607.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=309bp|location=Sequence derived from alignment at P-wetherbeei_contig13607:1508..1816- (Phaeothamnion wetherbeei SAG_119_79)
GGCTGGGTCTACAGGGTCGCGTTGAACTGGGCGAACAGCACCTTGCGTCG
CCGCGGTGGGCCGCGGCGCACGCTGCACCAGATCTCTCTGGGCGCGATCG
AGCCCGCCGACCCGAAGCTGATGGCGGCGATCGGTCAGCTCGACCTCGAT
CGACGCGCCGTCGTCGTCTGCCGCTTCTTCCTCGAGCTGAGTGAGCTCGA
GACGGCTCGAGCGCTCGGCATCCGTCCCGGCACGGTGAAGAGCCGGCTGC
ACCGCGCCCTGCACCAGCTGTCGGTGGAGCTGCGCCCGCGGACCGTGGAG
GAGGCGTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig13607:1508..1816-

>mRNA_P-wetherbeei_contig13607.2.1 ID=mRNA_P-wetherbeei_contig13607.2.1|Name=mRNA_P-wetherbeei_contig13607.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=309bp|location=Sequence derived from alignment at P-wetherbeei_contig13607:1508..1816- (Phaeothamnion wetherbeei SAG_119_79)
GGCTGGGTCTACAGGGTCGCGTTGAACTGGGCGAACAGCACCTTGCGTCG
CCGCGGTGGGCCGCGGCGCACGCTGCACCAGATCTCTCTGGGCGCGATCG
AGCCCGCCGACCCGAAGCTGATGGCGGCGATCGGTCAGCTCGACCTCGAT
CGACGCGCCGTCGTCGTCTGCCGCTTCTTCCTCGAGCTGAGTGAGCTCGA
GACGGCTCGAGCGCTCGGCATCCGTCCCGGCACGGTGAAGAGCCGGCTGC
ACCGCGCCCTGCACCAGCTGTCGGTGGAGCTGCGCCCGCGGACCGTGGAG
GAGGCGTGA
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