mRNA_P-wetherbeei_contig136.4.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig136.4.1
Unique NamemRNA_P-wetherbeei_contig136.4.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig136.4.1 vs. uniprot
Match: D8LT07_ECTSI (Beta-1,3-n-acetylglucosaminyltransferase, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LT07_ECTSI)

HSP 1 Score: 261 bits (667), Expect = 3.990e-76
Identity = 125/288 (43.40%), Postives = 179/288 (62.15%), Query Frame = 2
Query:  344 LMASVRSSGTIVAKPFYNFVYLIFTGDTEADAESREELRRIYGDYRGVA------TATDGAGTR-HSYTLRVLFVARKAGAPRNGEVAGDVLYVDVESGYSHIAAKTRSMMAVVTHFDFDYLMKGDEDTFVCFNLLASVLHAVPPAARGRVYAGVPTACKLEPTKP--LTGSVIRVKRHKWYDEPFIRHTLNGLDCYPVYMQGAFYVLAKPLVDLLHRGRDHLVVFGNEDTTLGSWLLGTNRELLPLGRIDSEQVWHCPCSHGMEWRPETANMTFYHKCKNIDQLRKC 1180
            +M  +   GT   +P  + +  IF+G TEADA  RE LR+IY  Y G        + T+G       +T+ V+FV  K  AP  GE+ GD+LYV V  GY +I  KT++M+ +V HFDFD+L+K D+D+FVC   +AS+LH + P  RG+VY GVPTAC  + T P    G V++   H+W+D  +++HTL GLDC+P YMQGAFY+LA+PLV+ L+RG +HL  F NED T+GSWL+G +RE++ +  + +  +W C C+             F+H CK + QL+ C
Sbjct:  340 VMGELEPVGTAKTRPKVDLLLTIFSGTTEADAAKRELLRQIYDKYEGWVKVGGPNSLTEGKNPEPREFTVSVVFVMSKETAPPEGELVGDILYVAVPEGYRNIVLKTKAMLCLVRHFDFDFLLKADDDSFVCLTRIASMLHDLDPEIRGKVYVGVPTACN-QSTNPDYWNGRVMKNPDHRWFDSKYVQHTLGGLDCFPAYMQGAFYILAQPLVEHLYRGHEHLECFTNEDVTIGSWLMGVDREMVEMYNLRTSHLWDCLCARTQITVKTRKKHMFFHNCKGLSQLKLC 626          
BLAST of mRNA_P-wetherbeei_contig136.4.1 vs. uniprot
Match: A0A835YWI3_9STRA (Hexosyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWI3_9STRA)

HSP 1 Score: 253 bits (646), Expect = 8.040e-76
Identity = 128/359 (35.65%), Postives = 203/359 (56.55%), Query Frame = 2
Query:  146 KRLCCEALVFAFVGALMTAIILELRSAGRDLFAGWFTKPEVLQTVSFVEGLSTIWSAPHEAATARSLMASVRSSGTIV------AKPFYNFVYLIFTGDTEADAESREELRRIYGDYRGVATATDGAGTRHSYTLRVLFVARKAGAPRNGEVAGDVLYVDVESGYSHIAAKTRSMMAVVTHFDFDYLMKGDEDTFVCFNLLASVLHAVPPAARGRVYAGVPTACKLEPTKPLTGSVIRVKRHKWYDEPFIRHTLNGLDCYPVYMQGAFYVLAKPLVDLLHRGRDHLVVFGNEDTTLGSWLLGTNRELLPLGRIDSEQVWHCPCS-----HGMEWRPETANMTFYHKCKNIDQLRKCSLS 1189
            +R+C E      +  +M    ++  S G D       +  +LQ V+ ++   TI+ A   AA A     +  SS  I       + P Y+ + ++F+GD+E DA+ R+ +RRIYG YRG      G  +R  Y  +++FV  ++ AP +G + GD L ++   GY +I  KT+ M++++ H +F YLMK D+DTFVC   +   LH +P   + +VYAGVPT C + P   + G V     HKWYDE ++ HT+  ++CYP Y QGA Y+L++ LV+ L++GRDHL+ F NED T+G+WL+G +R ++ L  +D  ++W C C+     H   +     N  F+H CK   Q+ KC+++
Sbjct:   34 QRMCSETNPMYMMAPIMPGRTVQ--SLGED-------EQTLLQRVNLLQDQVTIFKAKASAAVALQQQQAKNSSRAIAEVVNDSSLPTYDMLLVVFSGDSEDDAKRRDLMRRIYGRYRGRVVLNRGKKSRKKYKFKLVFVRGRSDAPEDGVLNGDTLLINAPDGYRNIVHKTKGMVSLLKHVNFKYLMKSDDDTFVCVQQVFHRLHNLPEETKKKVYAGVPTHCNM-PGHQMVGRVFSDPTHKWYDERYVEHTMGSMECYPPYHQGAGYILSRSLVEFLYKGRDHLLTFINEDVTMGTWLMGVDRSVVSLRDLDGARLWECTCASYRFAHDAAFHKNHQNNAFFHNCKQAWQMLKCAIA 382          
BLAST of mRNA_P-wetherbeei_contig136.4.1 vs. uniprot
Match: A0A6H5KLW3_9PHAE (Hexosyltransferase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLW3_9PHAE)

HSP 1 Score: 246 bits (628), Expect = 2.910e-74
Identity = 116/265 (43.77%), Postives = 167/265 (63.02%), Query Frame = 2
Query:  413 FTGDTEADAESREELRRIYGDYRGVA------TATDGAGTR-HSYTLRVLFVARKAGAPRNGEVAGDVLYVDVESGYSHIAAKTRSMMAVVTHFDFDYLMKGDEDTFVCFNLLASVLHAVPPAARGRVYAGVPTACKLEPTKP--LTGSVIRVKRHKWYDEPFIRHTLNGLDCYPVYMQGAFYVLAKPLVDLLHRGRDHLVVFGNEDTTLGSWLLGTNRELLPLGRIDSEQVWHCPCSHGMEWRPETANMTFYHKCKNIDQLRKC 1180
            F   ++ADA  RE LR+IY  Y G        + T+G       +T+ V+FV  K  AP  GE+ GD+LYV V  GY +I  KT++M+ +V HFDF++L+K D+D+FVC   +AS+LH + P   G+VYAGVPTAC  + T P    G V++   H+W+D  +++HTL GLDC+P YMQGAFY+LA+PLV+ L+RG +HL  F NED T+GSWL+G +RE++ +  + +  +W C C+             F+H CK + QL+ C
Sbjct:   27 FPAASQADAAKRELLRQIYDKYEGWVKVGGPNSLTEGTNPEPREFTVSVVFVMSKETAPPEGELVGDILYVAVPEGYRNIVLKTKAMLCLVRHFDFEFLLKADDDSFVCLTRIASMLHDLDPEISGKVYAGVPTACN-QSTNPDYWNGRVMKNPDHRWFDSKYVQHTLGGLDCFPAYMQGAFYILAQPLVEHLYRGHEHLECFTNEDVTIGSWLMGVDREMVEMYNLHTSHLWDCLCARTQITVKTRRKQMFFHNCKGLSQLKLC 290          
BLAST of mRNA_P-wetherbeei_contig136.4.1 vs. uniprot
Match: A0A6H5JHW0_9PHAE (Hexosyltransferase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHW0_9PHAE)

HSP 1 Score: 247 bits (631), Expect = 2.990e-73
Identity = 119/271 (43.91%), Postives = 163/271 (60.15%), Query Frame = 2
Query:  383 KPFYNFVYLIFTGDTEADAESREELRRIYGDYRGVATATDGAGTRHSYTLRVLFVARKAGAPRNGEVAGDVLYVDVESGYSHIAAKTRSMMAVVTHFDFDYLMKGDEDTFVCFNLLASVLHAVPPAARGRVYAGVPTACKLEPTKP--LTGSVIRVKRHKWYDEPFIRHTLNGLDCYPVYMQGAFYVLAKPLVDLLHRGRDHLVVFGNEDTTLGSWLLGTNRELLPLGRIDSEQVWHCPCSHGMEWRPETANMTFYHKCKNIDQLRKCSLS 1189
            +P+++++ ++F+GD       R+ +R +YG Y G    TD  G    YT +VL+V    GA   G++  DVL+V VE GY +IAAKT+ M+  V H  F YL+K D+DTFVC    AS +H VP   + +VY G+PTAC L P  P    G VI     KWYD  ++ HT+NGLDCYPVYMQGAFY+L+ PLV+ L++G   L+ F NED T+G WL G +R + PL  +   +VW C C     + P      F+H CK++D LR C  S
Sbjct:  142 RPYFDYLLVVFSGDDTDALAKRDYMREMYGTYGGQILITDERGQAFIYTFKVLYVVGHPGAVDMGDLMDDVLFVKVEKGYRNIAAKTKKMLEAVKHVRFKYLLKTDDDTFVCLRRTASQMHLVPAHIKPKVYGGIPTACHL-PNNPNDAVGKVIVDMDDKWYDGKYLNHTMNGLDCYPVYMQGAFYILSYPLVEFLNQGSSKLLTFDNEDVTIGLWLHGVDRAIFPLNDLRDARVWECSCKRP-NFNPGGDANVFFHNCKSMDDLRGCKAS 410          
BLAST of mRNA_P-wetherbeei_contig136.4.1 vs. uniprot
Match: A0A835YNB7_9STRA (Hexosyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNB7_9STRA)

HSP 1 Score: 240 bits (613), Expect = 3.940e-73
Identity = 105/218 (48.17%), Postives = 149/218 (68.35%), Query Frame = 2
Query:  530 LRVLFVARKAGAPRNGEVAGDVLYVDVESGYSHIAAKTRSMMAVVTHFDFDYLMKGDEDTFVCFNLLASVLHAVPPAARGRVYAGVPTACKLEPTKPLTGSVIRVKRHKWYDEPFIRHTLNGLDCYPVYMQGAFYVLAKPLVDLLHRGRDHLVVFGNEDTTLGSWLLGTNRELLPLGRIDSEQVWHCPCSHGMEWRPETANMTFYHKCKNIDQLRKCS 1183
            ++VLF+     A   G++ GD+LYV   +GY +I  KT++M+++VTHF+  YLMK D+DTFVC N +A  +  +PPA + +VYAG+PTAC LE + P  G VI+   HKW+D  F+ HTL GLDCYP Y QGAFY+L++PLV  LH+GR  L+ F NED T+GSWL+G +RE++    I   ++W C C+   +W     N  F+H CK++DQL+KC+
Sbjct:    1 MQVLFLVSHIDASEEGDLVGDILYVQCPAGYRNIVQKTKAMLSIVTHFNHKYLMKSDDDTFVCLNRVAKRMFTLPPAVKEKVYAGIPTACGLE-SNPHIGRVIKDPNHKWHDAKFVSHTLGGLDCYPAYHQGAFYLLSEPLVQYLHQGRSKLLTFTNEDVTMGSWLMGVDREMIAFNSISEARLWECTCAKYTKWLKYDTN-AFFHNCKSLDQLQKCA 216          
BLAST of mRNA_P-wetherbeei_contig136.4.1 vs. uniprot
Match: D7FQB9_ECTSI (Hexosyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQB9_ECTSI)

HSP 1 Score: 246 bits (627), Expect = 3.480e-72
Identity = 121/282 (42.91%), Postives = 168/282 (59.57%), Query Frame = 2
Query:  356 VRSSGTIVA--KPFYNFVYLIFTGDTEADAESREELRRIYGDYRGVATATDGAGTRHSYTLRVLFVARKAGAPRNGEVAGDVLYVDVESGYSHIAAKTRSMMAVVTHFDFDYLMKGDEDTFVCFNLLASVLHAVPPAARGRVYAGVPTACKLEPTKP--LTGSVIRVKRHKWYDEPFIRHTLNGLDCYPVYMQGAFYVLAKPLVDLLHRGRDHLVVFGNEDTTLGSWLLGTNRELLPLGRIDSEQVWHCPCSHGMEWRPETANMTFYHKCKNIDQLRKCSLS 1189
            VRS G++    + +++++ ++F+GD       R+ +R++YG Y G    TD  G    YT +VL+V    GA   G++  DVL+V VE GY +IAAKT+ M+  V H  F YL+K D+DTFVC    AS +H VP   + +VY G+PTAC L P  P    G VI     KWYD  ++ HT+NGLDCYPVYMQGAFY+L+ PLV+ L++G   L+ F NED T+G WL G +R + PL  +   ++W C C     + P      F+H CK +D LR C  S
Sbjct:  171 VRSQGSLGGDTRAYFDYLLVVFSGDDTDALAKRDYMRKMYGTYGGQILITDERGQAFIYTFKVLYVVGHPGAADMGDLMDDVLFVKVEKGYRNIAAKTKKMLEAVKHVRFKYLLKADDDTFVCLRRTASQMHLVPAHIKPKVYGGIPTACHL-PNNPDDEVGKVIVDMDEKWYDGKYLNHTMNGLDCYPVYMQGAFYILSYPLVEFLNQGSSKLLTFDNEDVTIGLWLHGVDRAIFPLNDLRDARMWECSCKRP-NFNPGGDANVFFHGCKGMDDLRGCKAS 450          
BLAST of mRNA_P-wetherbeei_contig136.4.1 vs. uniprot
Match: D7G6P0_ECTSI (Hexosyltransferase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G6P0_ECTSI)

HSP 1 Score: 226 bits (576), Expect = 1.440e-64
Identity = 113/252 (44.84%), Postives = 158/252 (62.70%), Query Frame = 2
Query:  386 PFYNFVYLIFTGDTEADAESREELRRIYGDYRG-VATATDGAGTRHSYTL----RVLFVARKAGAPRNGEVAGDVLYVDVESGYSHIAAKTRSMMAVVTHFDFDYLMKGDEDTFVCFNLLASVLHAVPPAARGRVYAGVPTACKLEPTKPLT--GSVIRVKRHKWYDEPFIRHTLNGLDCYPVYMQGAFYVLAKPLVDLLHRGRDHLVVFGNEDTTLGSWLLGTNRELLPLGRIDSEQVWHCPCSHGMEWRP 1120
            P  + +  I +GD +A    R+ +R +Y  Y G V    + +  ++  T+    +V+FV  ++ AP +GE+ GDVLYV+   GY +I  K + MM +V H DF +L+K D+DTFVC   LA+ LH  P  ++ ++YAGVPTAC   P  P    G VI+  + KWYD+ F+ HTL GLDCYPVYMQGAFYVLA+PLV+ L+RGR+H   F NED T+GSWLLG +R L  +   +S ++W+C C      RP
Sbjct:  179 PRTDLLLAILSGDDKAARLKRDTIRELYDKYGGWVTVGGERSQEQNEETVEMEFQVIFVVTRSTAPPDGELVGDVLYVNAPDGYRNIVYKVKHMMGLVRHIDFKFLLKADDDTFVCVERLANFLHNQPEESKDKIYAGVPTACN-SPANPSVKVGRVIKDHKDKWYDQKFVHHTLAGLDCYPVYMQGAFYVLAQPLVEHLYRGREHYDTFINEDVTVGSWLLGVDRALGTIHDFESSRLWNCVCGSNFVLRP 429          
BLAST of mRNA_P-wetherbeei_contig136.4.1 vs. uniprot
Match: A0A835YTA1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTA1_9STRA)

HSP 1 Score: 179 bits (453), Expect = 6.480e-46
Identity = 99/259 (38.22%), Postives = 138/259 (53.28%), Query Frame = 2
Query:  563 APRNGEVAGDVLYVDVESGYSHIAAKTRSMMAVVTHFDFDYLMKGDEDTFVCFNLLASVLH---------------------------------------------------AVPPAARGRVYAGVPTACKLEPTKPLTGSVIRVKRHKWYDEPFIRHTLNGLDCYPVYMQGAFYVLAKPLVDLLHRGRDHLVVFGNEDTTLGSWLLGTNRELLPLGRIDSEQVWHCPCSHGMEWRPETANMT--FYHKCKNIDQLRKC 1180
            AP +G + GDV +V    GY++IA  T+ MMA+  HF F +L K + DTFVC   L ++L                                                    A   A + R+YAGVPTAC +    P  G VI  K ++WYD  F+ HT+ GL CYPVYMQGAFYVLA+PLV+ L+ GR H V F NED T+GSWLLG +R+++ +  I + ++W C CS  ++  P+ A  +  F+H CK +++LR+C
Sbjct:  311 APDDGRLDGDVFWVRAPPGYNNIAEMTKQMMAL--HFLFRFLSKINGDTFVCLRRLVTLLAVQXXXXXXXXXXXXXXXXXXXRLVQXXXXXXXXXXXXXXXXXXXXXVTLLAAQTQATQRRLYAGVPTACGVHRNNPNVGRVIMDKTNRWYDPKFVTHTMGGLPCYPVYMQGAFYVLAQPLVEFLNLGRPHWVTFQNEDVTVGSWLLGVDRDIVTIDDITTARLWGCQCS--LDTMPQWARKSSVFFHDCKALEKLRRC 565          
BLAST of mRNA_P-wetherbeei_contig136.4.1 vs. uniprot
Match: A0A7S4FDN2_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4FDN2_CHRCT)

HSP 1 Score: 80.9 bits (198), Expect = 3.040e-12
Identity = 48/152 (31.58%), Postives = 76/152 (50.00%), Query Frame = 2
Query:  596 LYVDVESGYSHIAAKTRSMMAVVTH--FDFDYLMKGDEDTFVCFNLLASVLHA--VPPAARGRVYAGVPTACKLEPTKPLTGSVIRVKRHKWYDEPFIRHTLNG--LDCYPVYMQGAFYVLAKPLVDLLHRGRDHLVVFGNEDTTLGSWLLG 1033
            L ++   GY  +  K ++MM  +      FD+L+K D DTF+CF ++  ++    +      R+Y G    C           V+   + K+YD+ ++   L    +DCYP YMQG  YVL++ LV L+      L V+ NED  +G WL+G
Sbjct:  167 LKLNAADGYLQLGHKIKAMMQWIASRVIRFDFLLKADLDTFICFTMVTDLIDTMRIRFGTDQRIYLGHLETCSR---------VVHHPQDKFYDKHYLEDVLQSQNVDCYPPYMQGLGYVLSRDLVQLIGFMAPTLKVYTNEDMMVGIWLVG 309          
BLAST of mRNA_P-wetherbeei_contig136.4.1 vs. uniprot
Match: A0A224XSV4_9HEMI (Hexosyltransferase n=3 Tax=Triatominae TaxID=70999 RepID=A0A224XSV4_9HEMI)

HSP 1 Score: 68.9 bits (167), Expect = 3.730e-9
Identity = 50/165 (30.30%), Postives = 77/165 (46.67%), Query Frame = 2
Query:  587 GDVLYVDVESGYSHIAAKT-RSMMAVVTHFDFDYLMKGDEDTFVCFNLLASVLHAVPPAARGRVYAGVPTACKLEPTKPLTGSVIRVKRHKWYDEPFIRHTLNGLDC--YPVYMQGAFYVLAKPLVDLLHRGRDHLVVFGNEDTTLGSWLLGTNRELLPLGRIDS 1072
            GD+L V V   Y +++ K  RS   V + +DF YL+K D+DTF+    L   +  VP   +  +Y G             +G+    +R KW +       LN   C  Y  Y  G  Y+L K LVD + +  D+  ++ +ED T+G+WL   N   +   R D+
Sbjct:   99 GDILLVPVVDTYGNLSLKVLRSFQEVNSVYDFTYLIKTDDDTFLHIQELKKAIRLVP---KQFLYWGY-----------FSGNARVYRRGKWKE-------LNWFLCDRYLPYALGGAYILTKDLVDFIAKNGDNFRLYRSEDVTVGTWLAPLNVYRMHDARFDT 242          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig136.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LT07_ECTSI3.990e-7643.40Beta-1,3-n-acetylglucosaminyltransferase, putative... [more]
A0A835YWI3_9STRA8.040e-7635.65Hexosyltransferase n=1 Tax=Tribonema minus TaxID=3... [more]
A0A6H5KLW3_9PHAE2.910e-7443.77Hexosyltransferase n=1 Tax=Ectocarpus sp. CCAP 131... [more]
A0A6H5JHW0_9PHAE2.990e-7343.91Hexosyltransferase n=1 Tax=Ectocarpus sp. CCAP 131... [more]
A0A835YNB7_9STRA3.940e-7348.17Hexosyltransferase n=1 Tax=Tribonema minus TaxID=3... [more]
D7FQB9_ECTSI3.480e-7242.91Hexosyltransferase n=1 Tax=Ectocarpus siliculosus ... [more]
D7G6P0_ECTSI1.440e-6444.84Hexosyltransferase n=2 Tax=Ectocarpus TaxID=2879 R... [more]
A0A835YTA1_9STRA6.480e-4638.22Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S4FDN2_CHRCT3.040e-1231.58Hypothetical protein n=1 Tax=Chrysotila carterae T... [more]
A0A224XSV4_9HEMI3.730e-930.30Hexosyltransferase n=3 Tax=Triatominae TaxID=70999... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig136contigP-wetherbeei_contig136:4663..6217 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size1555
Hectar predicted targeting categoryother localisation
Exons1
Cds size1248
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185991.680941-UTR-P-wetherbeei_contig136:4662..49691683185991.680941-UTR-P-wetherbeei_contig136:4662..4969Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig136 4663..4969 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185991.690548-CDS-P-wetherbeei_contig136:4969..62171683185991.690548-CDS-P-wetherbeei_contig136:4969..6217Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig136 4970..6217 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig136.4.1prot_P-wetherbeei_contig136.4.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig136 4970..6217 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig136.4.1

>prot_P-wetherbeei_contig136.4.1 ID=prot_P-wetherbeei_contig136.4.1|Name=mRNA_P-wetherbeei_contig136.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=416bp
HVLPTFQRNRLHRTSSSPPTACHCVDIGASCERRRRTLPGFREQENGQEK
AVLRSIGLCIRRRSHDRHHFGTPKRWARLVCRLVYQARGPSNSLIRRRLE
HNLECSTRSGDGAIAHGLSEIVWDYRGQAVLQLCIPDFHWRHGSRRGESG
RASTHLRRLPWRGHRDGRGRHAAFLHAPRPVRRAEGGRPAQWRGCRRRAV
CRRREWLLAHRRQDAQHDGRRDALRLRLSDEGRRGHFRLLQPSGVGAARR
AACSAWPRLRRRADRLQAGADQATDRLRHPRQAAQVVRRAFHPPHAQRAR
LLPGVHAGRLLRAGQAAGGPAPPRSRPSGRFRERGHDPRQLAAGHKPGAA
ASGAHRQRAGVALSVLARHGVAARDGQYDLLPQVQEHRPAAQVLALQGCE
PPAGTLLTDSCCLVV*
back to top

mRNA from alignment at P-wetherbeei_contig136:4663..6217-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig136.4.1 ID=mRNA_P-wetherbeei_contig136.4.1|Name=mRNA_P-wetherbeei_contig136.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1555bp|location=Sequence derived from alignment at P-wetherbeei_contig136:4663..6217- (Phaeothamnion wetherbeei SAG_119_79)
CACGTCCTTCCAACCTTCCAACGGAACAGGCTCCACCGAACTTCCTCCTC TCCTCCCACAGCTTGCCATTGCGTAGATATTGGCGCATCTTGCGAAAGGC GTCGTCGCACACTTCCTGGATTTCGAGAACAGGAAAATGGGCAAGAAAAG GCTGTGTTGCGAAGCATTGGTCTTTGCATTCGTCGGCGCTCTCATGACCG CCATCATTTTGGAACTCCGAAGCGCTGGGCGCGACTTGTTTGCCGGCTGG TTTACCAAGCCCGAGGTCCTTCAAACAGTCTCATTCGTCGAAGGCTTGAG CACAATCTGGAGTGCTCCACACGAAGCGGCGACGGCGCGATCGCTCATGG CCTCAGTGAGATCGTCTGGGACTATCGTGGCCAAGCCGTTTTACAACTTT GTATACCTGATTTTCACTGGCGACACGGAAGCAGACGCGGAGAGTCGGGA AGAGCTTCGACGCATCTACGGAGACTACCGTGGCGTGGCCACCGCGACGG ACGGGGCCGGCACGCGGCATTCTTACACGCTCCGCGTCCTGTTCGTCGCG CGGAAGGCGGGCGCCCCGCGCAATGGCGAGGTTGCCGGCGACGTGCTGTA TGTCGACGTCGAGAGTGGCTACTCGCACATCGCCGCCAAGACGCGCAGCA TGATGGCCGTCGTGACGCACTTCGACTTCGACTATCTGATGAAGGGCGAC GAGGACACTTTCGTCTGCTTCAACCTTCTGGCGTCGGTGCTGCACGCCGT GCCGCCTGCAGCGCGTGGCCGCGTCTACGCCGGCGTGCCGACCGCCTGCA AGCTGGAGCCGACCAAGCCACTGACCGGCTCCGTCATCCGCGTCAAGCGG CACAAGTGGTACGACGAGCCTTTCATCCGCCACACGCTCAACGGGCTCGA CTGCTACCCGGTGTACATGCAGGGCGCCTTTTACGTGCTGGCCAAGCCGC TGGTGGACCTGCTCCACCGCGGTCGCGACCATCTGGTCGTTTTCGGGAAC GAGGACACGACCCTCGGCAGCTGGCTGCTGGGCACAAACCGGGAGCTGCT GCCTCTGGGGCGCATCGACAGCGAGCAGGTGTGGCACTGTCCGTGCTCGC ACGGCATGGAGTGGCGGCCCGAGACGGCCAATATGACCTTCTACCACAAG TGCAAGAACATCGACCAGCTGCGCAAGTGCTCGCTCTCCAGGGATGCGAG CCACCAGCGGGCACTCTGCTGACGGATTCTTGCTGTTTGGTAGTTTAAGG AGCGTTACATCTATTGAAAAGGTGGGTAGTAAGGGAGGAGGAAGTATTTC GAGAGGTGTCAGAGCTTTCAAGGGCCGTCTTCCCAACCTTGTGCGCCTGT GCGGAGGGGCCATCTCGGTTATTGTCTCGAGAGCTGTGACATGGTCGCTA GCGACTGCGGGGGATTTACTTGGTCGATCTCATCACAACAACCGTTTTAA TTGAACTCTTTGGTTTGTCAGCTTTCTTTTAAGGTAAGCCGGTGATGTTA GGATTTTGCGTCCAATTAGGGTTCCGACACAGCAATTCCAACGGAAAGAA CGTCA
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig136:4663..6217-

>mRNA_P-wetherbeei_contig136.4.1 ID=mRNA_P-wetherbeei_contig136.4.1|Name=mRNA_P-wetherbeei_contig136.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1248bp|location=Sequence derived from alignment at P-wetherbeei_contig136:4663..6217- (Phaeothamnion wetherbeei SAG_119_79)
CACGTCCTTCCAACCTTCCAACGGAACAGGCTCCACCGAACTTCCTCCTC
TCCTCCCACAGCTTGCCATTGCGTAGATATTGGCGCATCTTGCGAAAGGC
GTCGTCGCACACTTCCTGGATTTCGAGAACAGGAAAATGGGCAAGAAAAG
GCTGTGTTGCGAAGCATTGGTCTTTGCATTCGTCGGCGCTCTCATGACCG
CCATCATTTTGGAACTCCGAAGCGCTGGGCGCGACTTGTTTGCCGGCTGG
TTTACCAAGCCCGAGGTCCTTCAAACAGTCTCATTCGTCGAAGGCTTGAG
CACAATCTGGAGTGCTCCACACGAAGCGGCGACGGCGCGATCGCTCATGG
CCTCAGTGAGATCGTCTGGGACTATCGTGGCCAAGCCGTTTTACAACTTT
GTATACCTGATTTTCACTGGCGACACGGAAGCAGACGCGGAGAGTCGGGA
AGAGCTTCGACGCATCTACGGAGACTACCGTGGCGTGGCCACCGCGACGG
ACGGGGCCGGCACGCGGCATTCTTACACGCTCCGCGTCCTGTTCGTCGCG
CGGAAGGCGGGCGCCCCGCGCAATGGCGAGGTTGCCGGCGACGTGCTGTA
TGTCGACGTCGAGAGTGGCTACTCGCACATCGCCGCCAAGACGCGCAGCA
TGATGGCCGTCGTGACGCACTTCGACTTCGACTATCTGATGAAGGGCGAC
GAGGACACTTTCGTCTGCTTCAACCTTCTGGCGTCGGTGCTGCACGCCGT
GCCGCCTGCAGCGCGTGGCCGCGTCTACGCCGGCGTGCCGACCGCCTGCA
AGCTGGAGCCGACCAAGCCACTGACCGGCTCCGTCATCCGCGTCAAGCGG
CACAAGTGGTACGACGAGCCTTTCATCCGCCACACGCTCAACGGGCTCGA
CTGCTACCCGGTGTACATGCAGGGCGCCTTTTACGTGCTGGCCAAGCCGC
TGGTGGACCTGCTCCACCGCGGTCGCGACCATCTGGTCGTTTTCGGGAAC
GAGGACACGACCCTCGGCAGCTGGCTGCTGGGCACAAACCGGGAGCTGCT
GCCTCTGGGGCGCATCGACAGCGAGCAGGTGTGGCACTGTCCGTGCTCGC
ACGGCATGGAGTGGCGGCCCGAGACGGCCAATATGACCTTCTACCACAAG
TGCAAGAACATCGACCAGCTGCGCAAGTGCTCGCTCTCCAGGGATGCGAG
CCACCAGCGGGCACTCTGCTGACGGATTCTTGCTGTTTGGTAGTTTAA
back to top