mRNA_P-wetherbeei_contig13595.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig13595.1.1
Unique NamemRNA_P-wetherbeei_contig13595.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig13595.1.1 vs. uniprot
Match: A0A6M5YX51_9BACT (PSCyt1 domain-containing protein n=1 Tax=Frigoriglobus tundricola TaxID=2774151 RepID=A0A6M5YX51_9BACT)

HSP 1 Score: 95.5 bits (236), Expect = 3.540e-24
Identity = 46/46 (100.00%), Postives = 46/46 (100.00%), Query Frame = 1 
Query:    1 ASDPDKSKLYNSLLGKGAKQMPPKNPLAEDQIAVIKAWIAAGAKKD 138
            ASDPDKSKLYNSLLGKGAKQMPPKNPLAEDQIAVIKAWIAAGAKKD
Sbjct:   85 ASDPDKSKLYNSLLGKGAKQMPPKNPLAEDQIAVIKAWIAAGAKKD 130
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BLAST of mRNA_P-wetherbeei_contig13595.1.1 vs. uniprot
Match: A0A4V0HU91_9BACT (PSCyt1 domain-containing protein n=1 Tax=Gemmataceae bacterium TaxID=2052164 RepID=A0A4V0HU91_9BACT)

HSP 1 Score: 64.3 bits (155), Expect = 6.350e-12
Identity = 31/46 (67.39%), Postives = 35/46 (76.09%), Query Frame = 1 
Query:    1 ASDPDKSKLYNSLLGKGAKQMPPKNPLAEDQIAVIKAWIAAGAKKD 138
            A+D DKS+L  S  GKGAK MPPK  L  DQ+AV+KAWIAAGAK D
Sbjct:   84 ANDADKSRLVQSATGKGAKIMPPKKGLPGDQVAVLKAWIAAGAKND 129
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BLAST of mRNA_P-wetherbeei_contig13595.1.1 vs. uniprot
Match: A0A7X3ZGG5_9BACT (Uncharacterized protein n=1 Tax=Gemmatimonadetes bacterium TaxID=2026742 RepID=A0A7X3ZGG5_9BACT)

HSP 1 Score: 47.4 bits (111), Expect = 2.980e-5
Identity = 22/46 (47.83%), Postives = 34/46 (73.91%), Query Frame = 1 
Query:    7 DPDKSKLYNSLLGKG---AKQMPPKNPLAEDQIAVIKAWIAAGAKK 135
            +P+KS L   + G G   ++QMPP NPL+ +Q+ +I+AWIA+GAK+
Sbjct:   95 NPNKSYLLIKVRGDGEMISQQMPPGNPLSAEQVEIIRAWIASGAKE 140
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig13595.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6M5YX51_9BACT3.540e-24100.00PSCyt1 domain-containing protein n=1 Tax=Frigorigl... [more]
A0A4V0HU91_9BACT6.350e-1267.39PSCyt1 domain-containing protein n=1 Tax=Gemmatace... [more]
A0A7X3ZGG5_9BACT2.980e-547.83Uncharacterized protein n=1 Tax=Gemmatimonadetes b... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig13595contigP-wetherbeei_contig13595:1..141 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog666686.B1NLA3E_13365
PFAMsCytochrom_B_N_2
Model size141
Max annot lvl91061|Bacilli
KEGG koko:K00412
KEGG Pathwayko00190,ko01100,ko02020,ko04260,ko04714,ko04932,ko05010,ko05012,ko05016,map00190,map01100,map02020,map04260,map04714,map04932,map05010,map05012,map05016
KEGG ModuleM00151,M00152
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue6.32e-05
EggNOG OGsCOG1290@1|root,COG1290@2|Bacteria,1TP6M@1239|Firmicutes,4H9XV@91061|Bacilli,1ZB3U@1386|Bacillus
DescriptionCOG1290 Cytochrome b subunit of the bc complex
Cds size141
COG categoryC
BRITEko00000,ko00001,ko00002,ko03029
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185991.5811086-CDS-P-wetherbeei_contig13595:0..1411683185991.5811086-CDS-P-wetherbeei_contig13595:0..141Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13595 1..141 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig13595.1.1prot_P-wetherbeei_contig13595.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig13595 1..141 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig13595.1.1

>prot_P-wetherbeei_contig13595.1.1 ID=prot_P-wetherbeei_contig13595.1.1|Name=mRNA_P-wetherbeei_contig13595.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=47bp
ASDPDKSKLYNSLLGKGAKQMPPKNPLAEDQIAVIKAWIAAGAKKD*
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mRNA from alignment at P-wetherbeei_contig13595:1..141+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig13595.1.1 ID=mRNA_P-wetherbeei_contig13595.1.1|Name=mRNA_P-wetherbeei_contig13595.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=141bp|location=Sequence derived from alignment at P-wetherbeei_contig13595:1..141+ (Phaeothamnion wetherbeei SAG_119_79)
GCGAGTGATCCGGACAAGAGCAAACTGTACAATTCGTTGCTCGGCAAGGG
CGCGAAGCAGATGCCGCCGAAGAACCCGCTGGCCGAAGATCAGATCGCGG
TCATCAAGGCGTGGATCGCCGCCGGCGCGAAGAAGGATTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig13595:1..141+

>mRNA_P-wetherbeei_contig13595.1.1 ID=mRNA_P-wetherbeei_contig13595.1.1|Name=mRNA_P-wetherbeei_contig13595.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=141bp|location=Sequence derived from alignment at P-wetherbeei_contig13595:1..141+ (Phaeothamnion wetherbeei SAG_119_79)
GCGAGTGATCCGGACAAGAGCAAACTGTACAATTCGTTGCTCGGCAAGGG
CGCGAAGCAGATGCCGCCGAAGAACCCGCTGGCCGAAGATCAGATCGCGG
TCATCAAGGCGTGGATCGCCGCCGGCGCGAAGAAGGATTGA
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