mRNA_P-wetherbeei_contig13590.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig13590.1.1
Unique NamemRNA_P-wetherbeei_contig13590.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig13590.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig13590contigP-wetherbeei_contig13590:228..1505 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size769
Hectar predicted targeting categoryother localisation
Exons3
Cds size768
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185991.4989305-CDS-P-wetherbeei_contig13590:227..4661683185991.4989305-CDS-P-wetherbeei_contig13590:227..466Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13590 228..466 +
1683185991.5117955-CDS-P-wetherbeei_contig13590:674..8741683185991.5117955-CDS-P-wetherbeei_contig13590:674..874Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13590 675..874 +
1683185991.5213299-CDS-P-wetherbeei_contig13590:1175..15041683185991.5213299-CDS-P-wetherbeei_contig13590:1175..1504Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13590 1176..1504 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig13590.1.1prot_P-wetherbeei_contig13590.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig13590 228..1504 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig13590.1.1

>prot_P-wetherbeei_contig13590.1.1 ID=prot_P-wetherbeei_contig13590.1.1|Name=mRNA_P-wetherbeei_contig13590.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=256bp
DAPSSTKAEEDILGGALLEQISGPGAAGRIGIESASGHGLRNGVPQLAQS
RVTRFLGDSGAISAHKDDEDHNIDAAAARVPLSIEGTNPMAKAFTPTRPV
PPRGPPPGLTLSVNGNGGGGGGGGSPGSDELQMAAVANGAAEVVLSGFSS
MALSVDGGLQMSRLGSLQAGDQPAAAGGAATAGAPPGLLAEPSPHNLASP
GPGLRTFSAAVGTAVGDAAAAAAARSPMAAVDPAGGCNGSGAASHSLAQR
LQAAVA
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mRNA from alignment at P-wetherbeei_contig13590:228..1505+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig13590.1.1 ID=mRNA_P-wetherbeei_contig13590.1.1|Name=mRNA_P-wetherbeei_contig13590.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1278bp|location=Sequence derived from alignment at P-wetherbeei_contig13590:228..1505+ (Phaeothamnion wetherbeei SAG_119_79)
GACGCGCCGTCCTCCACGAAGGCGGAGGAGGACATCCTTGGAGGCGCGCT
TCTCGAGCAGATCTCCGGGCCCGGGGCGGCTGGTAGAATCGGGATAGAAA
GTGCAAGCGGCCACGGCCTTAGAAATGGGGTACCGCAACTGGCGCAGAGC
CGAGTCACCCGCTTCCTGGGGGATTCTGGGGCCATCAGCGCGCACAAGGA
TGATGAAGACCACAACATCGACGCAGCGGCAGCGCGTGTGTGAGTTTAAA
GGCCGTCGCTTCGGCGTTTTGGGACACCGTTGATTGGGCACATTGAGCTT
ACTGGCGTTGGCCCCTAGGTAAATTCCTTTTCTCTTTTAAAAACGTTGCT
CTTCACATAAATCTTGTTTCTCTCGTAAGCCAATAACGTCTATTTATCAT
TGTCCCCTCTCCGCGCCTTCTGGCCGTTCGCCTGAACATGCACACAGCCC
GCTCTCAATCGAGGGGACGAATCCGATGGCCAAGGCCTTCACGCCCACGC
GACCGGTGCCGCCACGCGGCCCACCGCCGGGGCTGACGCTCTCCGTGAAC
GGCAATGGCGGCGGCGGAGGTGGTGGTGGTTCTCCAGGGTCTGATGAGCT
TCAGATGGCAGCGGTCGCAAACGGCGCCGCCGAGGTCGTCCTCTCAGGTC
CGTTAGTCTGTCCGCTGTTCACTCTGTGTCACTCTGTGACCCAATTGGAT
CCCCCGTACTGCTGGGGATGTGTCTCCTCTTTGTCTAACTTCACCTGCTT
GCAGCGTGAAAATAACTTTGGGAGAGCTCAGAAGTATAGGAGTGCAGGCG
CGGCTCTTCATCTTGATCTTTCCGTTGTTCCTTCTGAAGGCGTGTTCGTG
TACTTCCGGTCTTTTCCTTCCATGAGACGATTCAAATAGCCCACGCCCTG
CTAACTCTTTGCCCTGTTCCTGCTTTTTCCCCGGTTTCGTTTCTTCAGGC
TTCTCCAGCATGGCTCTGTCAGTTGACGGCGGCCTGCAGATGTCCCGACT
CGGCTCTCTCCAGGCCGGCGACCAGCCGGCGGCGGCGGGCGGCGCCGCCA
CGGCAGGCGCGCCACCGGGCCTGCTGGCAGAGCCGTCGCCGCACAACCTC
GCTTCGCCGGGACCGGGGCTGCGCACCTTTTCGGCGGCGGTCGGCACCGC
CGTGGGCGATGCAGCGGCAGCGGCGGCGGCGCGGTCGCCGATGGCTGCGG
TGGATCCGGCAGGTGGCTGCAATGGCAGCGGCGCCGCGTCGCATTCGCTG
GCGCAGCGTCTTCAGGCGGCGGTGGCGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig13590:228..1505+

>mRNA_P-wetherbeei_contig13590.1.1 ID=mRNA_P-wetherbeei_contig13590.1.1|Name=mRNA_P-wetherbeei_contig13590.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=768bp|location=Sequence derived from alignment at P-wetherbeei_contig13590:228..1505+ (Phaeothamnion wetherbeei SAG_119_79)
GACGCGCCGTCCTCCACGAAGGCGGAGGAGGACATCCTTGGAGGCGCGCT
TCTCGAGCAGATCTCCGGGCCCGGGGCGGCTGGTAGAATCGGGATAGAAA
GTGCAAGCGGCCACGGCCTTAGAAATGGGGTACCGCAACTGGCGCAGAGC
CGAGTCACCCGCTTCCTGGGGGATTCTGGGGCCATCAGCGCGCACAAGGA
TGATGAAGACCACAACATCGACGCAGCGGCAGCGCGTGTCCCGCTCTCAA
TCGAGGGGACGAATCCGATGGCCAAGGCCTTCACGCCCACGCGACCGGTG
CCGCCACGCGGCCCACCGCCGGGGCTGACGCTCTCCGTGAACGGCAATGG
CGGCGGCGGAGGTGGTGGTGGTTCTCCAGGGTCTGATGAGCTTCAGATGG
CAGCGGTCGCAAACGGCGCCGCCGAGGTCGTCCTCTCAGGCTTCTCCAGC
ATGGCTCTGTCAGTTGACGGCGGCCTGCAGATGTCCCGACTCGGCTCTCT
CCAGGCCGGCGACCAGCCGGCGGCGGCGGGCGGCGCCGCCACGGCAGGCG
CGCCACCGGGCCTGCTGGCAGAGCCGTCGCCGCACAACCTCGCTTCGCCG
GGACCGGGGCTGCGCACCTTTTCGGCGGCGGTCGGCACCGCCGTGGGCGA
TGCAGCGGCAGCGGCGGCGGCGCGGTCGCCGATGGCTGCGGTGGATCCGG
CAGGTGGCTGCAATGGCAGCGGCGCCGCGTCGCATTCGCTGGCGCAGCGT
CTTCAGGCGGCGGTGGCG
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