mRNA_P-wetherbeei_contig1358.4.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1358.4.1
Unique NamemRNA_P-wetherbeei_contig1358.4.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig1358.4.1 vs. uniprot
Match: D8LQD7_ECTSI (Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQD7_ECTSI)

HSP 1 Score: 130 bits (328), Expect = 1.180e-27
Identity = 218/780 (27.95%), Postives = 281/780 (36.03%), Query Frame = 1
Query:    1 YDVYAGIDVYGRGTAYGGGYNTGKALGKIARAGLSAAIFAPGWSMENETPGGGHVVPATA---WQTVEADFNNANQLFWAAAAADWXXXXXXXXXXXXSAAPAVLAQHRAAGGPSGFPTL--VTRFGRGIGAGVWIAGQRVA-----------SAGEWPLPPSST---------------AAVYDLCGQDISPLALGLGGS-DGGNRGRKVNARNGGXXXXXXXXXXXXXXXXASGSGGTEGATPLTIRGDAACGWCWVSAFAEYRCAFDGTSCLALAGELAPGVTAAAALFKCGWSLVPGPLAARITFRVAAGCEVSLVLLLLDAG--GAVHEVVLRA-NKAAGPAPAAAV-----------------TEVSPRVVGSSGAAAAALARR-------NFPCSAMSSKRIALRESKAGAVSTYAPAHEETTAAAPAPPXXXXXXXXISMSVPDPALGPWVTRQFVVRDAAMLG-QTLQQVKVVAS-------LAGQQPVGVAAAGDTAEAAT--------------TAAAAGDNPTPGGAVLVPYSCCLGEVAVGPMVLPGKAFCAVRRLWVYDLDLVPAVSLPAASAATAMAEAAAVTEPAVAVAASGERGGSAYYGGGSSQNAILGLTLAWEMALSTAGSXXXXXXXXXXXXXAAGP--PLHWDVWAFDEVEHAAVLSVAAAAVDRGRHFVAAEAPEASPSWVAGAAEAGRMRWAGRAYGDRLRIAGMPVVLAGGSGGGGSGARPGAVMAAVHRTAAAVPSLSVCFVLQEVDAAGRRQP 2091
            YDVY GID +GRGT  GGG++  KALGKI RAG+SAA+FAP W+ME ET GGG V P      WQ VE +F+  +  FW+  AA W                         GG  G P L  V  FG G+G    I G+ VA           + GE                        A YDL  Q ++PL  G GG  +GG R   V AR  G                   S  ++G    TIR           +FAE   +FDGTS L   G L    TA+  L+ C   L   PL  R+TF   A  +++L+L L   G  G   EVVLR   K   P    AV                  E S R + ++ +A   L  R         P  A+ ++    R   AG     +P+    T A+P+                      W+TR +VVRD  M G + +++V +V +       L+ Q+  G  AA  +A +A                A         G A L  Y   LGEVA+GP           RR        V    L A   A    E              GE GG             + L+LAWE      G              A  P   LH D+W                       +   E      SW          RW GRAYG + R+  + V       GGG G R G        T  A    S+   +Q+V+A G R+P
Sbjct:  399 YDVYMGIDTFGRGTWGGGGFDVDKALGKIRRAGVSAALFAPAWTMEEETTGGGRVDPDPGRGGWQEVEQEFSEIDTEFWSKIAAVWQPPRSLPG-----------------GGRGGAPLLPLVVNFGHGLGNAWRIRGEEVAVFRASRAADDDATGEGDKNXXXXXXXXXXXXDDRLVVGGAFYDLASQCLTPLVGGRGGPVNGGLRSDVVKARRAGD------------------SSDSQGGANGTIRA--------TYSFAE---SFDGTSSLRFTGVLNEKATASFPLYSCDVPLPADPLEIRLTFCGNADSDMALLLSLDVPGQLGGRREVVLRDWGKEGAPKKQQAVFSKRLTFTDTKATYCPVREESDRALSATASAEYGLQARVRALRDAGEPYDAIRTRLREERSGGAGVAGADSPSSAAATGASPS--------------------STWITRTYVVRDLRMGGSRAIREVSLVCARRNKLPTLSTQEEGGEKAAAGSAWSALRGXXXXXXXXXXXXNAGGKSGAERRGVAGLAAYRAFLGEVAIGPW----------RRETPSTFGRVE--GLRAKEVACFYGE--------------GETGGXXXX------XVTVDLSLAWESE-GCVGRGRGFVKKDDGVFGAGSPWTTLHCDIWGA---------------------YGGEEEGXXXGSW----------RWLGRAYGQKYRLTNLRV-------GGGGGCREGGA------TGEAASGSSLVLAVQQVNAMGYREP 1035          
BLAST of mRNA_P-wetherbeei_contig1358.4.1 vs. uniprot
Match: A0A6H5KWK2_9PHAE (Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWK2_9PHAE)

HSP 1 Score: 96.7 bits (239), Expect = 2.480e-17
Identity = 48/86 (55.81%), Postives = 59/86 (68.60%), Query Frame = 1
Query:    1 YDVYAGIDVYGRGTAYGGGYNTGKALGKIARAGLSAAIFAPGWSMENETPGGGHVVPATA---WQTVEADFNNANQLFWAAAAADW 249
            YDVY G+D +GRGT  GGG++  KALGKI RAG+SAA+FAP W+ME ET GGG V P      WQ VE +F+  +  FW+  AA W
Sbjct:  398 YDVYMGVDTFGRGTWGGGGFDVDKALGKIRRAGVSAALFAPAWTMEEETTGGGQVDPDPGRGGWQKVEQEFSEIDSKFWSKIAAVW 483          
BLAST of mRNA_P-wetherbeei_contig1358.4.1 vs. uniprot
Match: A0A7S4D863_HETAK (Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D863_HETAK)

HSP 1 Score: 70.9 bits (172), Expect = 6.720e-11
Identity = 38/78 (48.72%), Postives = 46/78 (58.97%), Query Frame = 1
Query:    1 YDVYAGIDVYGRGTAYGGGYNTGKALGKIARAGLSAAIFAPGWSMENETPGGGHVV--PATAWQTVEADFNNANQLFW 228
            +DVY GIDV+GR T  GGG    KAL KIA AG+SAA+FAPGW M+N+   GG         W   E +F   +  FW
Sbjct:   16 WDVYFGIDVFGRNTYGGGGMQCDKALEKIAEAGVSAALFAPGWVMQNQMENGGSFTGNDPKEWDRTEEEFVKLSTEFW 93          
BLAST of mRNA_P-wetherbeei_contig1358.4.1 vs. uniprot
Match: A0A5J5F881_9PEZI (Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase n=1 Tax=Sphaerosporella brunnea TaxID=1250544 RepID=A0A5J5F881_9PEZI)

HSP 1 Score: 68.6 bits (166), Expect = 2.710e-8
Identity = 46/138 (33.33%), Postives = 64/138 (46.38%), Query Frame = 1
Query:    7 VYAGIDVYGRGTAYGGGYNTGKALGKIARAGLSAAIFAPGWSMENETPGGGHVVPATAWQTVEA-DFNNANQLFWAAAAADWXXXXXXXXXXXXSAAPAVLAQHRAAGGPSGFPTLVTRFGRGIGAGVWIAGQRVASA 417
            V+ GID YGRG+  GGG+  G AL +I +AGL AA+FAPGW+                W+  E  +F N  + FW   A                       + + AG   GF    T F RG G+G+W+ G++V +A
Sbjct:  261 VFMGIDCYGRGSLGGGGFGVGIALEEIRKAGLQAALFAPGWT----------------WEHYEGKNFRNVEKKFWGVVAQT--------------------VEPKPAGDKDGF---YTSFNRGFGSGLWVQGKKVTAA 359          
BLAST of mRNA_P-wetherbeei_contig1358.4.1 vs. uniprot
Match: A0A6G1MND5_ORBOL (DASH complex subunit DAM1 n=9 Tax=Orbiliaceae TaxID=47021 RepID=A0A6G1MND5_ORBOL)

HSP 1 Score: 67.8 bits (164), Expect = 5.820e-8
Identity = 34/47 (72.34%), Postives = 36/47 (76.60%), Query Frame = 1
Query:    1 YDVYAGIDVYGRGTAYGGGYNTGKALGKIARAGLSAAIFAPGWSMEN 141
            YDVY GIDV+GRGT  GGG+ TG AL  I  AGLSAAIFAPGW  EN
Sbjct:  496 YDVYMGIDVFGRGTFGGGGWGTGTALSVIRPAGLSAAIFAPGWVFEN 542          
BLAST of mRNA_P-wetherbeei_contig1358.4.1 vs. uniprot
Match: A0A196SKL3_BLAHN (Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase n=1 Tax=Blastocystis sp. subtype 1 (strain ATCC 50177 / NandII) TaxID=478820 RepID=A0A196SKL3_BLAHN)

HSP 1 Score: 67.4 bits (163), Expect = 8.220e-8
Identity = 37/73 (50.68%), Postives = 47/73 (64.38%), Query Frame = 1
Query:    4 DVYAGIDVYGRGTAYGGGYNTGKALGKIARAGLSAAIFAPGWSMENETPGGGHVVPATAWQTVEADFNNANQL 222
            DVY G+DV+GRG+  GGGYNT KAL +IA+ GLS A+FAPGW  E+E       + +  +   EADF N   L
Sbjct:  637 DVYVGVDVWGRGSFSGGGYNTHKALEQIAKQGLSCALFAPGWVFEHEFD----CIYSPEYVRKEADFWNRTLL 705          
BLAST of mRNA_P-wetherbeei_contig1358.4.1 vs. uniprot
Match: A0A640KRT9_LEITA (Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase n=1 Tax=Leishmania tarentolae TaxID=5689 RepID=A0A640KRT9_LEITA)

HSP 1 Score: 66.2 bits (160), Expect = 1.850e-7
Identity = 53/166 (31.93%), Postives = 76/166 (45.78%), Query Frame = 1
Query:    4 DVYAGIDVYGRGTAYGGGYNTGKALGKIARAGLSAAIFAPGWSMENETPG---GGHVVPATAWQTVEADFNNANQLFWAAAAADWXXXXXXXXXXXXSAAPAVLAQHRAAGGPSGFPTLVTRFGRGIGAGVWIAGQRVASAGEWPLPPSSTAAVYDLCG-QDISPL 489
            DVY G+DV+GR    GGGYNT  ++ + A+A LS A+FAPGW+ME E+ G   G     +  W  ++  F    +L W+  A               S A A  A H  A        L T F  G+G   ++ G RV + G+       T+   ++ G  D+ P 
Sbjct:  488 DVYVGVDVFGRNMYGGGGYNTHVSVAEAAKASLSVALFAPGWTMERESKGRRDGFQSAESRMWFPMQKKFLYHARLIWSTGAT-------AGGLQQSSTADASDAHHETA------LCLWTSFQSGVGYDFYVNGHRV-TGGDAAASVVGTSGWCEISGAHDLPPF 639          
BLAST of mRNA_P-wetherbeei_contig1358.4.1 vs. uniprot
Match: A0A7C8PU12_ORBOL (Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase n=2 Tax=Orbilia oligospora TaxID=2813651 RepID=A0A7C8PU12_ORBOL)

HSP 1 Score: 65.9 bits (159), Expect = 1.900e-7
Identity = 33/47 (70.21%), Postives = 36/47 (76.60%), Query Frame = 1
Query:    1 YDVYAGIDVYGRGTAYGGGYNTGKALGKIARAGLSAAIFAPGWSMEN 141
            +DVY GIDV+GRGT  GGG+ TG AL  I  AGLSAAIFAPGW  EN
Sbjct:  248 HDVYMGIDVFGRGTFGGGGWGTGTALSVIRPAGLSAAIFAPGWVFEN 294          
BLAST of mRNA_P-wetherbeei_contig1358.4.1 vs. uniprot
Match: A0A0S4J764_BODSA (Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase n=1 Tax=Bodo saltans TaxID=75058 RepID=A0A0S4J764_BODSA)

HSP 1 Score: 65.1 bits (157), Expect = 4.560e-7
Identity = 49/143 (34.27%), Postives = 65/143 (45.45%), Query Frame = 1
Query:    4 DVYAGIDVYGRGTAYGGGYNTGKALGKIARAGLSAAIFAPGWSMENETPGGGHVVPATAWQTVEADFNNANQLFWAAAAADWXXXXXXXXXXXXSAAPAVLAQHRAAG--GPSGFPTLVTRFGRGIGAGVWIAGQRVASAGEW 426
            DVY GID +GR T  GGGY+   A+ +I + G SAA+FAPGW++EN + G         W+     F  A+  FW   A  +             A   VL   R  G  G S  P L+  F RG G    + G+R+     W
Sbjct:  874 DVYVGIDCFGRSTFGGGGYDCHIAMQEIVQRGQSAAMFAPGWTLENASGG--------TWE----GFLTADAKFWGRIAPRYLTNVPAIRKC--DAILGVLDAQRGVGVKGGSTTPLLLASFSRGAGTSFHLGGERLIGCDGW 1002          
BLAST of mRNA_P-wetherbeei_contig1358.4.1 vs. uniprot
Match: A0A4D9D452_9STRA (Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D452_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 5.520e-7
Identity = 56/192 (29.17%), Postives = 79/192 (41.15%), Query Frame = 1
Query:    1 YDVYAGIDVYGRGTAYGGGYNTGKALGKIARAGLSAAIFAPGWSMENE--------------------------------TPGGGHVVPATA-WQTVEADFNNANQLFWAAAAADWXXXXXXXXXXXXSAAPAVLAQHRAAGGP-SGFPTLVTRFGRGIGAGVWIAGQRVASAGEWPLPPSSTAAVYDLCGQ 474
            +DV+ G+D +GRGT  GGG+N  +AL     AG+SAA+FAPGW  E E                                +    H+  A A +  +E  F    + FW+  A  W                    +    GGP +G  T +T FG G+G  VW+A      AG+  L P+ TA V  +C +
Sbjct:  323 WDVWMGVDCFGRGTYGGGGFNCSEALEAARAAGVSAALFAPGWIWEEEVRRRETVRGQGAPEEHVIDSLSSPILKAHLPQSHASSHLSSAVAKFYRIEGIFEAVQEEFWSKVARIWPRRPLPAGSLGGR------KEEGGEGGPKTGERTFLTNFGTGVGLKVWVA------AGQISLCPAITA-VATICAE 501          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1358.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LQD7_ECTSI1.180e-2727.95Mannosyl-glycoprotein endo-beta-N-acetylglucosamin... [more]
A0A6H5KWK2_9PHAE2.480e-1755.81Mannosyl-glycoprotein endo-beta-N-acetylglucosamin... [more]
A0A7S4D863_HETAK6.720e-1148.72Mannosyl-glycoprotein endo-beta-N-acetylglucosamin... [more]
A0A5J5F881_9PEZI2.710e-833.33Mannosyl-glycoprotein endo-beta-N-acetylglucosamin... [more]
A0A6G1MND5_ORBOL5.820e-872.34DASH complex subunit DAM1 n=9 Tax=Orbiliaceae TaxI... [more]
A0A196SKL3_BLAHN8.220e-850.68Mannosyl-glycoprotein endo-beta-N-acetylglucosamin... [more]
A0A640KRT9_LEITA1.850e-731.93Mannosyl-glycoprotein endo-beta-N-acetylglucosamin... [more]
A0A7C8PU12_ORBOL1.900e-770.21Mannosyl-glycoprotein endo-beta-N-acetylglucosamin... [more]
A0A0S4J764_BODSA4.560e-734.27Mannosyl-glycoprotein endo-beta-N-acetylglucosamin... [more]
A0A4D9D452_9STRA5.520e-729.17Mannosyl-glycoprotein endo-beta-N-acetylglucosamin... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1358contigP-wetherbeei_contig1358:4991..7318 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LQD7
Preferred nameENGASE
PFAMsGlyco_hydro_85
Model size2110
Max annot lvl2759|Eukaryota
KEGG koko:K01227,ko:K20308
KEGG Pathwayko00511,map00511
Hectar predicted targeting categoryother localisation
GOsGO:0000270,GO:0000323,GO:0003674,GO:0003824,GO:0004553,GO:0004563,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005615,GO:0005622,GO:0005623,GO:0005737,GO:0005764,GO:0005773,GO:0005829,GO:0005975,GO:0006022,GO:0006026,GO:0006027,GO:0006457,GO:0006464,GO:0006491,GO:0006517,GO:0006807,GO:0008092,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009100,GO:0009253,GO:0009605,GO:0009607,GO:0009617,GO:0009987,GO:0015929,GO:0016052,GO:0016231,GO:0016787,GO:0016798,GO:0017022,GO:0019538,GO:0030203,GO:0033925,GO:0035821,GO:0036211,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044033,GO:0044035,GO:0044040,GO:0044041,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044278,GO:0044419,GO:0044421,GO:0044424,GO:0044444,GO:0044464,GO:0050896,GO:0051672,GO:0051704,GO:0051707,GO:0071704,GO:1901135,GO:1901136,GO:1901564,GO:1901565,GO:1901575
Exons2
Evalue1.93e-28
EggNOG OGsCOG4724@1|root,KOG2331@2759|Eukaryota
EC3.2.1.96
Descriptionmannosyl-glycoprotein endo-beta-N-acetylglucosaminidase activity
Cds size2106
COG categoryG
BRITEko00000,ko00001,ko01000,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185991.2040548-CDS-P-wetherbeei_contig1358:4992..70261683185991.2040548-CDS-P-wetherbeei_contig1358:4992..7026Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1358 4993..7026 -
1683185991.2155035-CDS-P-wetherbeei_contig1358:7246..73181683185991.2155035-CDS-P-wetherbeei_contig1358:7246..7318Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1358 7247..7318 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1358.4.1prot_P-wetherbeei_contig1358.4.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1358 4993..7318 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1358.4.1

>prot_P-wetherbeei_contig1358.4.1 ID=prot_P-wetherbeei_contig1358.4.1|Name=mRNA_P-wetherbeei_contig1358.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=702bp
YDVYAGIDVYGRGTAYGGGYNTGKALGKIARAGLSAAIFAPGWSMENETP
GGGHVVPATAWQTVEADFNNANQLFWAAAAADWPPPRALPPPPLVSAAPA
VLAQHRAAGGPSGFPTLVTRFGRGIGAGVWIAGQRVASAGEWPLPPSSTA
AVYDLCGQDISPLALGLGGSDGGNRGRKVNARNGGGSSSRSSGGSGGGSN
RASGSGGTEGATPLTIRGDAACGWCWVSAFAEYRCAFDGTSCLALAGELA
PGVTAAAALFKCGWSLVPGPLAARITFRVAAGCEVSLVLLLLDAGGAVHE
VVLRANKAAGPAPAAAVTEVSPRVVGSSGAAAAALARRNFPCSAMSSKRI
ALRESKAGAVSTYAPAHEETTAAAPAPPAAAAPAPPISMSVPDPALGPWV
TRQFVVRDAAMLGQTLQQVKVVASLAGQQPVGVAAAGDTAEAATTAAAAG
DNPTPGGAVLVPYSCCLGEVAVGPMVLPGKAFCAVRRLWVYDLDLVPAVS
LPAASAATAMAEAAAVTEPAVAVAASGERGGSAYYGGGSSQNAILGLTLA
WEMALSTAGSGGSGGSGSASASAAAGPPLHWDVWAFDEVEHAAVLSVAAA
AVDRGRHFVAAEAPEASPSWVAGAAEAGRMRWAGRAYGDRLRIAGMPVVL
AGGSGGGGSGARPGAVMAAVHRTAAAVPSLSVCFVLQEVDAAGRRQPFHR
CP
back to top

mRNA from alignment at P-wetherbeei_contig1358:4991..7318-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1358.4.1 ID=mRNA_P-wetherbeei_contig1358.4.1|Name=mRNA_P-wetherbeei_contig1358.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2328bp|location=Sequence derived from alignment at P-wetherbeei_contig1358:4991..7318- (Phaeothamnion wetherbeei SAG_119_79)
TACGATGTGTACGCGGGGATCGACGTCTACGGCCGCGGCACGGCGTATGG CGGCGGCTACAACACCGGCAAAGTGAGTTGGTGTTTGCCTGTCTGAATTT TTGATTGCTGGTTGGCTGGTCGTTTCAGCTGACATTCCATCACCGTGTTA CGAGGATATCCGCCTCCACATGGCGTTGACAAGGAATGACTTCCGCAATG GCAAAGAGGACTTGGGGCTCTTCCTTTTCCGTCACTGCTTTAACAAACAT ACCTGTTCACTTCTTTATCTCTTCACCACTCCTAAATAAAAGGCGCTGGG GAAAATTGCGCGCGCGGGCCTCTCGGCAGCGATCTTCGCGCCGGGGTGGT CCATGGAGAATGAAACACCGGGCGGCGGACATGTCGTACCAGCGACGGCG TGGCAGACAGTGGAGGCAGACTTCAACAACGCCAACCAGCTGTTCTGGGC CGCTGCCGCCGCCGATTGGCCGCCGCCGCGGGCCCTGCCGCCGCCGCCGC TTGTTTCTGCAGCGCCGGCAGTACTGGCGCAGCATAGAGCGGCAGGCGGG CCTTCCGGTTTCCCCACGCTCGTCACGCGATTCGGGCGCGGCATCGGCGC GGGCGTCTGGATCGCCGGCCAGCGTGTGGCGTCCGCCGGCGAGTGGCCGC TGCCGCCATCGTCCACCGCCGCTGTTTACGACCTTTGCGGTCAAGACATC TCGCCGCTGGCGCTCGGCCTCGGCGGCAGCGACGGCGGCAACCGCGGCCG TAAAGTCAACGCCAGAAATGGCGGCGGCAGCAGCAGCAGAAGCAGCGGCG GTAGCGGCGGTGGCAGCAACAGAGCCAGCGGCAGTGGCGGCACCGAAGGA GCGACGCCGCTGACGATCCGCGGCGACGCAGCCTGCGGGTGGTGCTGGGT GAGCGCTTTTGCCGAATACCGGTGCGCCTTCGACGGCACCTCCTGCTTGG CGCTGGCGGGGGAGCTGGCGCCAGGCGTCACGGCCGCAGCGGCGCTTTTC AAGTGCGGCTGGTCCCTCGTGCCAGGGCCGCTGGCGGCACGAATCACTTT TCGCGTTGCCGCCGGCTGCGAGGTCAGCCTCGTGCTGTTGCTTCTTGACG CCGGCGGCGCAGTTCACGAGGTGGTGCTACGAGCCAACAAGGCGGCAGGT CCGGCGCCAGCAGCAGCAGTGACGGAAGTGAGCCCCAGAGTGGTCGGTTC TTCAGGGGCTGCAGCGGCAGCGTTGGCAAGGCGAAATTTTCCGTGCTCTG CAATGTCGTCCAAGCGCATCGCGCTGCGCGAGTCCAAGGCTGGCGCGGTG AGCACCTACGCTCCGGCGCACGAAGAAACAACCGCCGCAGCGCCGGCGCC GCCGGCTGCTGCCGCTCCTGCGCCGCCGATATCGATGTCCGTACCAGATC CGGCGCTCGGCCCGTGGGTGACGCGGCAGTTCGTGGTGCGGGACGCCGCG ATGCTGGGGCAAACCTTGCAGCAGGTGAAAGTCGTGGCGTCTCTGGCGGG GCAGCAGCCAGTGGGAGTAGCGGCTGCAGGCGACACGGCGGAGGCCGCGA CAACTGCGGCGGCGGCCGGCGACAATCCGACCCCTGGCGGCGCTGTTCTG GTACCGTACTCGTGTTGCCTGGGCGAGGTGGCGGTCGGGCCAATGGTTCT TCCCGGGAAGGCGTTCTGTGCCGTGCGCCGCCTGTGGGTGTACGACCTCG ACCTGGTTCCGGCTGTCTCGCTGCCGGCGGCGTCCGCAGCGACAGCAATG GCGGAGGCGGCAGCCGTGACAGAGCCAGCAGTGGCTGTGGCGGCAAGCGG AGAGCGAGGCGGCTCAGCCTACTACGGCGGCGGCAGCAGCCAGAATGCCA TTCTTGGCCTCACGCTGGCTTGGGAGATGGCTCTTTCCACGGCCGGAAGC GGCGGCAGCGGCGGCAGTGGAAGTGCCAGCGCGTCGGCAGCCGCAGGGCC TCCGCTCCATTGGGACGTTTGGGCCTTCGACGAGGTGGAACATGCCGCGG TGCTGTCGGTAGCGGCGGCAGCGGTGGATCGCGGGCGGCACTTTGTGGCG GCTGAGGCGCCAGAAGCGTCACCGTCGTGGGTGGCGGGGGCGGCGGAGGC CGGCCGCATGCGGTGGGCGGGACGTGCGTACGGCGACCGGCTGCGTATAG CCGGTATGCCCGTCGTCCTGGCGGGCGGTAGCGGCGGCGGCGGTAGTGGC GCCCGCCCTGGAGCGGTGATGGCGGCAGTTCACAGAACCGCGGCGGCGGT GCCATCACTGTCGGTCTGCTTCGTGCTGCAGGAGGTTGACGCCGCCGGGC GCCGCCAGCCGTTCCACCGCTGCCCCAG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig1358:4991..7318-

>mRNA_P-wetherbeei_contig1358.4.1 ID=mRNA_P-wetherbeei_contig1358.4.1|Name=mRNA_P-wetherbeei_contig1358.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=2106bp|location=Sequence derived from alignment at P-wetherbeei_contig1358:4991..7318- (Phaeothamnion wetherbeei SAG_119_79)
TACGATGTGTACGCGGGGATCGACGTCTACGGCCGCGGCACGGCGTATGG
CGGCGGCTACAACACCGGCAAAGCGCTGGGGAAAATTGCGCGCGCGGGCC
TCTCGGCAGCGATCTTCGCGCCGGGGTGGTCCATGGAGAATGAAACACCG
GGCGGCGGACATGTCGTACCAGCGACGGCGTGGCAGACAGTGGAGGCAGA
CTTCAACAACGCCAACCAGCTGTTCTGGGCCGCTGCCGCCGCCGATTGGC
CGCCGCCGCGGGCCCTGCCGCCGCCGCCGCTTGTTTCTGCAGCGCCGGCA
GTACTGGCGCAGCATAGAGCGGCAGGCGGGCCTTCCGGTTTCCCCACGCT
CGTCACGCGATTCGGGCGCGGCATCGGCGCGGGCGTCTGGATCGCCGGCC
AGCGTGTGGCGTCCGCCGGCGAGTGGCCGCTGCCGCCATCGTCCACCGCC
GCTGTTTACGACCTTTGCGGTCAAGACATCTCGCCGCTGGCGCTCGGCCT
CGGCGGCAGCGACGGCGGCAACCGCGGCCGTAAAGTCAACGCCAGAAATG
GCGGCGGCAGCAGCAGCAGAAGCAGCGGCGGTAGCGGCGGTGGCAGCAAC
AGAGCCAGCGGCAGTGGCGGCACCGAAGGAGCGACGCCGCTGACGATCCG
CGGCGACGCAGCCTGCGGGTGGTGCTGGGTGAGCGCTTTTGCCGAATACC
GGTGCGCCTTCGACGGCACCTCCTGCTTGGCGCTGGCGGGGGAGCTGGCG
CCAGGCGTCACGGCCGCAGCGGCGCTTTTCAAGTGCGGCTGGTCCCTCGT
GCCAGGGCCGCTGGCGGCACGAATCACTTTTCGCGTTGCCGCCGGCTGCG
AGGTCAGCCTCGTGCTGTTGCTTCTTGACGCCGGCGGCGCAGTTCACGAG
GTGGTGCTACGAGCCAACAAGGCGGCAGGTCCGGCGCCAGCAGCAGCAGT
GACGGAAGTGAGCCCCAGAGTGGTCGGTTCTTCAGGGGCTGCAGCGGCAG
CGTTGGCAAGGCGAAATTTTCCGTGCTCTGCAATGTCGTCCAAGCGCATC
GCGCTGCGCGAGTCCAAGGCTGGCGCGGTGAGCACCTACGCTCCGGCGCA
CGAAGAAACAACCGCCGCAGCGCCGGCGCCGCCGGCTGCTGCCGCTCCTG
CGCCGCCGATATCGATGTCCGTACCAGATCCGGCGCTCGGCCCGTGGGTG
ACGCGGCAGTTCGTGGTGCGGGACGCCGCGATGCTGGGGCAAACCTTGCA
GCAGGTGAAAGTCGTGGCGTCTCTGGCGGGGCAGCAGCCAGTGGGAGTAG
CGGCTGCAGGCGACACGGCGGAGGCCGCGACAACTGCGGCGGCGGCCGGC
GACAATCCGACCCCTGGCGGCGCTGTTCTGGTACCGTACTCGTGTTGCCT
GGGCGAGGTGGCGGTCGGGCCAATGGTTCTTCCCGGGAAGGCGTTCTGTG
CCGTGCGCCGCCTGTGGGTGTACGACCTCGACCTGGTTCCGGCTGTCTCG
CTGCCGGCGGCGTCCGCAGCGACAGCAATGGCGGAGGCGGCAGCCGTGAC
AGAGCCAGCAGTGGCTGTGGCGGCAAGCGGAGAGCGAGGCGGCTCAGCCT
ACTACGGCGGCGGCAGCAGCCAGAATGCCATTCTTGGCCTCACGCTGGCT
TGGGAGATGGCTCTTTCCACGGCCGGAAGCGGCGGCAGCGGCGGCAGTGG
AAGTGCCAGCGCGTCGGCAGCCGCAGGGCCTCCGCTCCATTGGGACGTTT
GGGCCTTCGACGAGGTGGAACATGCCGCGGTGCTGTCGGTAGCGGCGGCA
GCGGTGGATCGCGGGCGGCACTTTGTGGCGGCTGAGGCGCCAGAAGCGTC
ACCGTCGTGGGTGGCGGGGGCGGCGGAGGCCGGCCGCATGCGGTGGGCGG
GACGTGCGTACGGCGACCGGCTGCGTATAGCCGGTATGCCCGTCGTCCTG
GCGGGCGGTAGCGGCGGCGGCGGTAGTGGCGCCCGCCCTGGAGCGGTGAT
GGCGGCAGTTCACAGAACCGCGGCGGCGGTGCCATCACTGTCGGTCTGCT
TCGTGCTGCAGGAGGTTGACGCCGCCGGGCGCCGCCAGCCGTTCCACCGC
TGCCCC
back to top