mRNA_P-wetherbeei_contig13563.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig13563.1.1
Unique NamemRNA_P-wetherbeei_contig13563.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig13563.1.1 vs. uniprot
Match: A0A1Q4D9Z5_9HYPH (tRNA threonylcarbamoyladenosine biosynthesis protein TsaE n=1 Tax=Rhizobiales bacterium 64-17 TaxID=1895814 RepID=A0A1Q4D9Z5_9HYPH)

HSP 1 Score: 221 bits (563), Expect = 3.530e-67
Identity = 111/158 (70.25%), Postives = 122/158 (77.22%), Query Frame = 1 
Query:    1 MVQTTSGGYSFTVALEDEQATHRLMADIAGLIEPGDLITLSGDLGAGKTAFARAFIRHVAGDDSIEVPSPTFTLTQSYDLEHFPVVHADLYRLGHPEELNELGFDDTPETAVMLLEWPDRAGGHLPADRLDIELTLSPPQGETFRHAQVTGYGAFAAR 474
            M  TT+G  SFTVAL DEQAT +LM DIA +I PGD ITLSGDLGAGKT FARA IRH AGD   EVPSPTFTLTQSYDL  FP+VHADLYRL    EL ELGFDD P TAV L+EWPDRA G+LP DRLDI  TL+P  G + R+A+VTGYG+F  R
Sbjct:    1 MFPTTAGNSSFTVALSDEQATLKLMRDIASIIAPGDTITLSGDLGAGKTTFARALIRHFAGDPLTEVPSPTFTLTQSYDLPKFPLVHADLYRLSGSSELAELGFDDLPPTAVTLVEWPDRAAGYLPPDRLDIGFTLAPKLGPSHRNARVTGYGSFGPR 158
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BLAST of mRNA_P-wetherbeei_contig13563.1.1 vs. uniprot
Match: A0A371B997_9HYPH (tRNA threonylcarbamoyladenosine biosynthesis protein TsaE n=1 Tax=Pseudolabrys sp. GY_H TaxID=2292256 RepID=A0A371B997_9HYPH)

HSP 1 Score: 219 bits (559), Expect = 1.390e-66
Identity = 104/150 (69.33%), Postives = 122/150 (81.33%), Query Frame = 1 
Query:   25 YSFTVALEDEQATHRLMADIAGLIEPGDLITLSGDLGAGKTAFARAFIRHVAGDDSIEVPSPTFTLTQSYDLEHFPVVHADLYRLGHPEELNELGFDDTPETAVMLLEWPDRAGGHLPADRLDIELTLSPPQGETFRHAQVTGYGAFAAR 474
            YSF+VAL DEQAT RL ADIA L+EPGD++TL GDLGAGK+AFARAFIRH+AGD++ EVPSPTFTL QSYDL  F +VHADLYRL  P+EL ELGFDD  +  VML+EWP+RA GHLP DR+++ L L   QG+TFRH +VTG G  AAR
Sbjct:    8 YSFSVALHDEQATRRLAADIANLVEPGDVLTLLGDLGAGKSAFARAFIRHLAGDENAEVPSPTFTLMQSYDLPRFALVHADLYRLSGPDELTELGFDDEADNTVMLIEWPERARGHLPEDRINVALMLDASQGDTFRHCKVTGLGRLAAR 157
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BLAST of mRNA_P-wetherbeei_contig13563.1.1 vs. uniprot
Match: UPI0010BF1B82 (tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE n=1 Tax=Pseudolabrys sp. FHR47 TaxID=2562284 RepID=UPI0010BF1B82)

HSP 1 Score: 219 bits (558), Expect = 2.140e-66
Identity = 107/158 (67.72%), Postives = 123/158 (77.85%), Query Frame = 1 
Query:    1 MVQTTSGGYSFTVALEDEQATHRLMADIAGLIEPGDLITLSGDLGAGKTAFARAFIRHVAGDDSIEVPSPTFTLTQSYDLEHFPVVHADLYRLGHPEELNELGFDDTPETAVMLLEWPDRAGGHLPADRLDIELTLSPPQGETFRHAQVTGYGAFAAR 474
            M  ++   +SFTVAL DEQAT RL ADIA LIEPGD+ITL GDLG GK+AFARAFIRH+AGDD+ EVPSPTFTL QSYDL  F +VHADLYRL  P+EL ELGFDD     VML+EWP+RA GHLP DR+++ L L   QG+TFRH +VTG G  AAR
Sbjct:    1 MPSSSPTAFSFTVALRDEQATRRLAADIANLIEPGDVITLLGDLGVGKSAFARAFIRHLAGDDNAEVPSPTFTLMQSYDLPRFALVHADLYRLSGPDELTELGFDDEAGQTVMLIEWPERARGHLPDDRINVALMLDASQGDTFRHCKVTGLGKLAAR 158
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BLAST of mRNA_P-wetherbeei_contig13563.1.1 vs. uniprot
Match: A0A6N7GR94_9HYPH (tRNA threonylcarbamoyladenosine biosynthesis protein TsaE n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A6N7GR94_9HYPH)

HSP 1 Score: 218 bits (554), Expect = 7.370e-66
Identity = 104/155 (67.10%), Postives = 123/155 (79.35%), Query Frame = 1 
Query:   10 TTSGGYSFTVALEDEQATHRLMADIAGLIEPGDLITLSGDLGAGKTAFARAFIRHVAGDDSIEVPSPTFTLTQSYDLEHFPVVHADLYRLGHPEELNELGFDDTPETAVMLLEWPDRAGGHLPADRLDIELTLSPPQGETFRHAQVTGYGAFAAR 474
            TT+GG SFTV L DEQAT RLM D+A  +EPGD++TLSGDLGAGKT FARA IR++AGD+++EVPSPTFTL Q Y+L  FPVVHADLYR+    EL ELGFDD PE AV+++EWPDRA G LP DR+D+ LTL+P     FRHA+VTGYG  A R
Sbjct:    3 TTTGGASFTVVLPDEQATMRLMVDVASALEPGDVLTLSGDLGAGKTTFARAMIRYLAGDETVEVPSPTFTLMQIYELPRFPVVHADLYRVSGSSELAELGFDDLPEDAVIVVEWPDRAAGFLPHDRIDVTLTLAPKLKPEFRHARVTGYGTCATR 157
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BLAST of mRNA_P-wetherbeei_contig13563.1.1 vs. uniprot
Match: A0A0Q7TSQ5_9HYPH (tRNA threonylcarbamoyladenosine biosynthesis protein TsaE n=1 Tax=Pseudolabrys sp. Root1462 TaxID=1736466 RepID=A0A0Q7TSQ5_9HYPH)

HSP 1 Score: 218 bits (554), Expect = 7.890e-66
Identity = 103/158 (65.19%), Postives = 125/158 (79.11%), Query Frame = 1 
Query:    1 MVQTTSGGYSFTVALEDEQATHRLMADIAGLIEPGDLITLSGDLGAGKTAFARAFIRHVAGDDSIEVPSPTFTLTQSYDLEHFPVVHADLYRLGHPEELNELGFDDTPETAVMLLEWPDRAGGHLPADRLDIELTLSPPQGETFRHAQVTGYGAFAAR 474
            M   +SG +SF+ AL DE AT RL ADIA LIEPGD+I LSGDLGAGK+AFARAFIRH+AGDD +EVPSPTFTL Q+YDL  F +VHADLYRL  P+EL+ELGFDD   + VML+EWPDRA G+LP DR+D+ L L   Q +++RH +VTG+G  A+R
Sbjct:    1 MSAPSSGAFSFSTALGDEAATRRLAADIANLIEPGDVIALSGDLGAGKSAFARAFIRHLAGDDELEVPSPTFTLMQTYDLPRFHLVHADLYRLSGPDELSELGFDDEAASTVMLIEWPDRAAGYLPPDRIDVALALDAAQSDSYRHCEVTGHGRLASR 158
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BLAST of mRNA_P-wetherbeei_contig13563.1.1 vs. uniprot
Match: A0A345ZZL6_9HYPH (tRNA threonylcarbamoyladenosine biosynthesis protein TsaE n=1 Tax=Pseudolabrys taiwanensis TaxID=331696 RepID=A0A345ZZL6_9HYPH)

HSP 1 Score: 212 bits (540), Expect = 9.090e-64
Identity = 105/155 (67.74%), Postives = 121/155 (78.06%), Query Frame = 1 
Query:   10 TTSGGYSFTVALEDEQATHRLMADIAGLIEPGDLITLSGDLGAGKTAFARAFIRHVAGDDSIEVPSPTFTLTQSYDLEHFPVVHADLYRLGHPEELNELGFDDTPETAVMLLEWPDRAGGHLPADRLDIELTLSPPQGETFRHAQVTGYGAFAAR 474
            +TSG YSFTV + DEQAT+RLMADIAG IE GDLITLSGDLGAGKT FARA IR++A + +IEVPSPTFTL Q+Y L  F +VHADLYRL  P+EL ELGF++  + AV LLEWPDRAG  L ADR DI  TL P +  +FRH  VTGYG+ AAR
Sbjct:    3 STSGSYSFTVEVADEQATYRLMADIAGAIEAGDLITLSGDLGAGKTTFARALIRYLADNPTIEVPSPTFTLMQAYTLPRFNLVHADLYRLSGPDELTELGFEEFGDNAVTLLEWPDRAGSQLAADRFDIAFTLDPDKARSFRHVHVTGYGSCAAR 157
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BLAST of mRNA_P-wetherbeei_contig13563.1.1 vs. uniprot
Match: A0A833GDD4_9HYPH (tRNA threonylcarbamoyladenosine biosynthesis protein TsaE n=1 Tax=Pseudorhodoplanes sp. TaxID=1934341 RepID=A0A833GDD4_9HYPH)

HSP 1 Score: 212 bits (540), Expect = 9.500e-64
Identity = 105/158 (66.46%), Postives = 120/158 (75.95%), Query Frame = 1 
Query:    1 MVQTTSGGYSFTVALEDEQATHRLMADIAGLIEPGDLITLSGDLGAGKTAFARAFIRHVAGDDSIEVPSPTFTLTQSYDLEHFPVVHADLYRLGHPEELNELGFDDTPETAVMLLEWPDRAGGHLPADRLDIELTLSPPQGETFRHAQVTGYGAFAAR 474
            M+ T  GG  FT+A+E E AT RL ADIA  +EPGDL+TLSGDLGAGKT FARA IR++AGD SI VPSPTFTL Q+Y+L  FP+VH DLYRL  P EL ELG DD  E AV+LLEWPDRA G LP DRLDI LTL P +G  +R  ++TGYG FAAR
Sbjct:    1 MIPTPPGGSGFTIAIESEAATTRLAADIAMALEPGDLVTLSGDLGAGKTTFARALIRYLAGDKSIAVPSPTFTLIQTYELPRFPLVHCDLYRLSGPGELAELGLDDLAEGAVVLLEWPDRAAGFLPRDRLDIALTLLPQRGLEYRQVRITGYGKFAAR 158
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BLAST of mRNA_P-wetherbeei_contig13563.1.1 vs. uniprot
Match: A0A140GV58_9HYPH (tRNA threonylcarbamoyladenosine biosynthesis protein TsaE n=1 Tax=Rhodoplanes sp. Z2-YC6860 TaxID=674703 RepID=A0A140GV58_9HYPH)

HSP 1 Score: 212 bits (539), Expect = 2.330e-63
Identity = 104/158 (65.82%), Postives = 119/158 (75.32%), Query Frame = 1 
Query:    1 MVQTTSGGYSFTVALEDEQATHRLMADIAGLIEPGDLITLSGDLGAGKTAFARAFIRHVAGDDSIEVPSPTFTLTQSYDLEHFPVVHADLYRLGHPEELNELGFDDTPETAVMLLEWPDRAGGHLPADRLDIELTLSPPQGETFRHAQVTGYGAFAAR 474
            M+  TSGG S++V L  EQ  HRL+ DIA  ++PGDL+TLSGDLGAGKT FARA IRH+A +  I VPSPTFTL Q+YDL+ FPVVHADLYRL  P EL ELGFDD P  AV+LLEWPDRA G LP DRLDI  TL+P  G   R+ +VTGYG FA R
Sbjct:    3 MLPITSGGSSYSVTLASEQGIHRLVMDIAAALDPGDLVTLSGDLGAGKTTFARALIRHLAENPEIPVPSPTFTLMQTYDLKQFPVVHADLYRLDGPGELAELGFDDLPRNAVVLLEWPDRAAGFLPPDRLDIAFTLAPLAGPEHRNVRVTGYGKFAGR 160
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BLAST of mRNA_P-wetherbeei_contig13563.1.1 vs. uniprot
Match: A0A6L5FIE1_9HYPH (tRNA threonylcarbamoyladenosine biosynthesis protein TsaE n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A6L5FIE1_9HYPH)

HSP 1 Score: 207 bits (526), Expect = 1.180e-61
Identity = 102/158 (64.56%), Postives = 119/158 (75.32%), Query Frame = 1 
Query:    1 MVQTTSGGYSFTVALEDEQATHRLMADIAGLIEPGDLITLSGDLGAGKTAFARAFIRHVAGDDSIEVPSPTFTLTQSYDLEHFPVVHADLYRLGHPEELNELGFDDTPETAVMLLEWPDRAGGHLPADRLDIELTLSPPQGETFRHAQVTGYGAFAAR 474
            M+ TTSGG SF+VAL DE A  R M DIA  +EPGDL+TLSGDLGAGKT FARA +R++A D++IEVPSPTF L QSY+L  FP+VHADLYRL    EL ELGFD  P+ A +LLEWPDRA G LP DR+DI LTL P +G   R+ +VTGYG  A R
Sbjct:    1 MLPTTSGGSSFSVALADEAALRRFMVDIAVALEPGDLVTLSGDLGAGKTTFARALVRYLADDETIEVPSPTFNLVQSYELPRFPLVHADLYRLSGSAELAELGFDGLPDEAAVLLEWPDRAAGFLPPDRIDIALTLVPQRGLDHRNVRVTGYGTVAPR 158
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BLAST of mRNA_P-wetherbeei_contig13563.1.1 vs. uniprot
Match: A0A537V5T3_9PROT (tRNA threonylcarbamoyladenosine biosynthesis protein TsaE n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A537V5T3_9PROT)

HSP 1 Score: 206 bits (525), Expect = 1.560e-61
Identity = 103/158 (65.19%), Postives = 117/158 (74.05%), Query Frame = 1 
Query:    1 MVQTTSGGYSFTVALEDEQATHRLMADIAGLIEPGDLITLSGDLGAGKTAFARAFIRHVAGDDSIEVPSPTFTLTQSYDLEHFPVVHADLYRLGHPEELNELGFDDTPETAVMLLEWPDRAGGHLPADRLDIELTLSPPQGETFRHAQVTGYGAFAAR 474
            M  T S   SF+VAL DE AT RL  DIA  +EPGD +TLSGDLGAGKT   R  IR++AGD +IEVPSPTFTL Q Y+L  FP+VHADLYRL  P EL ELGFDD PE AV+LLEWPDRA G LP DRLD+ LTL+P     FRHA++TG+GA A R
Sbjct:    1 MALTASATSSFSVALPDEHATRRLAIDIANSLEPGDFVTLSGDLGAGKTTLVRTLIRYLAGDAAIEVPSPTFTLMQIYELPQFPLVHADLYRLSGPAELAELGFDDLPEGAVVLLEWPDRADGLLPPDRLDVSLTLAPKLKLEFRHARITGFGALAPR 158
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig13563.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1Q4D9Z5_9HYPH3.530e-6770.25tRNA threonylcarbamoyladenosine biosynthesis prote... [more]
A0A371B997_9HYPH1.390e-6669.33tRNA threonylcarbamoyladenosine biosynthesis prote... [more]
UPI0010BF1B822.140e-6667.72tRNA (adenosine(37)-N6)-threonylcarbamoyltransfera... [more]
A0A6N7GR94_9HYPH7.370e-6667.10tRNA threonylcarbamoyladenosine biosynthesis prote... [more]
A0A0Q7TSQ5_9HYPH7.890e-6665.19tRNA threonylcarbamoyladenosine biosynthesis prote... [more]
A0A345ZZL6_9HYPH9.090e-6467.74tRNA threonylcarbamoyladenosine biosynthesis prote... [more]
A0A833GDD4_9HYPH9.500e-6466.46tRNA threonylcarbamoyladenosine biosynthesis prote... [more]
A0A140GV58_9HYPH2.330e-6365.82tRNA threonylcarbamoyladenosine biosynthesis prote... [more]
A0A6L5FIE1_9HYPH1.180e-6164.56tRNA threonylcarbamoyladenosine biosynthesis prote... [more]
A0A537V5T3_9PROT1.560e-6165.19tRNA threonylcarbamoyladenosine biosynthesis prote... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig13563contigP-wetherbeei_contig13563:415..888 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog1187851.A33M_1148
Preferred nameMA20_24090
PFAMsAPH,TsaE
Model size474
Max annot lvl28211|Alphaproteobacteria
KEGG rclassRC00002,RC00078
KEGG koko:K07102
KEGG ReactionR08968,R11024
KEGG Pathwayko00520,ko01100,map00520,map01100
Hectar predicted targeting categoryother localisation
Exons1
Evalue4.43e-56
EggNOG OGsCOG0802@1|root,COG3178@1|root,COG0802@2|Bacteria,COG3178@2|Bacteria,1MXCH@1224|Proteobacteria,2TSJD@28211|Alphaproteobacteria,3FD30@34008|Rhodovulum
EC2.7.1.221
DescriptionPhosphotransferase enzyme family
Cds size474
COG categoryS
BRITEko00000,ko00001,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185990.6414156-CDS-P-wetherbeei_contig13563:414..8881683185990.6414156-CDS-P-wetherbeei_contig13563:414..888Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13563 415..888 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig13563.1.1prot_P-wetherbeei_contig13563.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig13563 415..888 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig13563.1.1

>prot_P-wetherbeei_contig13563.1.1 ID=prot_P-wetherbeei_contig13563.1.1|Name=mRNA_P-wetherbeei_contig13563.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=158bp
MVQTTSGGYSFTVALEDEQATHRLMADIAGLIEPGDLITLSGDLGAGKTA
FARAFIRHVAGDDSIEVPSPTFTLTQSYDLEHFPVVHADLYRLGHPEELN
ELGFDDTPETAVMLLEWPDRAGGHLPADRLDIELTLSPPQGETFRHAQVT
GYGAFAAR
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mRNA from alignment at P-wetherbeei_contig13563:415..888+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig13563.1.1 ID=mRNA_P-wetherbeei_contig13563.1.1|Name=mRNA_P-wetherbeei_contig13563.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=474bp|location=Sequence derived from alignment at P-wetherbeei_contig13563:415..888+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGTCCAGACCACTTCAGGCGGCTACAGCTTCACGGTGGCGCTGGAAGA
CGAGCAAGCCACCCACCGCCTGATGGCCGATATCGCCGGCCTGATCGAGC
CTGGCGACCTGATCACGCTGTCCGGCGATCTCGGCGCCGGCAAGACGGCC
TTTGCCCGCGCGTTCATCCGCCACGTCGCCGGCGACGACAGCATCGAGGT
GCCGAGCCCGACCTTCACCCTGACGCAGAGCTACGACCTGGAGCACTTTC
CGGTCGTGCATGCCGACCTCTACCGGCTCGGCCATCCGGAGGAACTGAAC
GAGCTCGGCTTCGACGACACGCCCGAAACCGCCGTCATGCTGCTGGAATG
GCCCGACCGTGCCGGCGGGCACTTGCCGGCCGACCGCCTCGACATCGAGC
TCACATTATCGCCGCCGCAGGGCGAGACCTTCCGCCACGCGCAGGTCACC
GGCTACGGCGCCTTCGCCGCGCGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig13563:415..888+

>mRNA_P-wetherbeei_contig13563.1.1 ID=mRNA_P-wetherbeei_contig13563.1.1|Name=mRNA_P-wetherbeei_contig13563.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=474bp|location=Sequence derived from alignment at P-wetherbeei_contig13563:415..888+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGTCCAGACCACTTCAGGCGGCTACAGCTTCACGGTGGCGCTGGAAGA
CGAGCAAGCCACCCACCGCCTGATGGCCGATATCGCCGGCCTGATCGAGC
CTGGCGACCTGATCACGCTGTCCGGCGATCTCGGCGCCGGCAAGACGGCC
TTTGCCCGCGCGTTCATCCGCCACGTCGCCGGCGACGACAGCATCGAGGT
GCCGAGCCCGACCTTCACCCTGACGCAGAGCTACGACCTGGAGCACTTTC
CGGTCGTGCATGCCGACCTCTACCGGCTCGGCCATCCGGAGGAACTGAAC
GAGCTCGGCTTCGACGACACGCCCGAAACCGCCGTCATGCTGCTGGAATG
GCCCGACCGTGCCGGCGGGCACTTGCCGGCCGACCGCCTCGACATCGAGC
TCACATTATCGCCGCCGCAGGGCGAGACCTTCCGCCACGCGCAGGTCACC
GGCTACGGCGCCTTCGCCGCGCGC
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