mRNA_P-wetherbeei_contig13552.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig13552.1.1
Unique NamemRNA_P-wetherbeei_contig13552.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig13552.1.1 vs. uniprot
Match: D8LRI4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRI4_ECTSI)

HSP 1 Score: 50.4 bits (119), Expect = 8.620e-6
Identity = 20/31 (64.52%), Postives = 25/31 (80.65%), Query Frame = 1 
Query:   37 DQLSFKAGDIITLKRDPSSKGWGLGELKGKV 129
            +QLSFK GD+I+LKR P  +GWGLG+L GK 
Sbjct:   18 EQLSFKQGDVISLKRVPPGEGWGLGKLNGKT 48
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig13552.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LRI4_ECTSI8.620e-664.52Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig13552contigP-wetherbeei_contig13552:1413..1571 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D8LRI4
Preferred nameENAH
PFAMsEF-hand_4,RasGEF,RasGEF_N,SH3_1,SH3_2,SH3_9,VASP_tetra,WH1
Model size159
Max annot lvl2759|Eukaryota
KEGG koko:K03099,ko:K05746
KEGG Pathwayko01521,ko01522,ko04010,ko04012,ko04013,ko04014,ko04062,ko04068,ko04072,ko04150,ko04151,ko04320,ko04360,ko04510,ko04540,ko04630,ko04650,ko04660,ko04662,ko04664,ko04714,ko04722,ko04810,ko04910,ko04912,ko04915,ko04917,ko04926,ko05034,ko05160,ko05165,ko05200,ko05205,ko05206,ko05210,ko05211,ko05213,ko05214,ko05215,ko05220,ko05221,ko05223,ko05224,ko05225,ko05226,ko05231,map01521,map01522,map04010,map04012,map04013,map04014,map04062,map04068,map04072,map04150,map04151,map04320,map04360,map04510,map04540,map04630,map04650,map04660,map04662,map04664,map04714,map04722,map04810,map04910,map04912,map04915,map04917,map04926,map05034,map05160,map05165,map05200,map05205,map05206,map05210,map05211,map05213,map05214,map05215,map05220,map05221,map05223,map05224,map05225,map05226,map05231
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue1.41e-06
EggNOG OGsKOG1029@1|root,KOG1029@2759|Eukaryota
Descriptionpositive regulation of caveolin-mediated endocytosis
Cds size159
COG categoryU
BRITEko00000,ko00001
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185990.3646038-CDS-P-wetherbeei_contig13552:1412..15711683185990.3646038-CDS-P-wetherbeei_contig13552:1412..1571Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13552 1413..1571 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig13552.1.1prot_P-wetherbeei_contig13552.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig13552 1413..1571 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig13552.1.1

>prot_P-wetherbeei_contig13552.1.1 ID=prot_P-wetherbeei_contig13552.1.1|Name=mRNA_P-wetherbeei_contig13552.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=53bp
SRCLQTRNKTAPDQLSFKAGDIITLKRDPSSKGWGLGELKGKVIKMRCST
CN*
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mRNA from alignment at P-wetherbeei_contig13552:1413..1571+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig13552.1.1 ID=mRNA_P-wetherbeei_contig13552.1.1|Name=mRNA_P-wetherbeei_contig13552.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=159bp|location=Sequence derived from alignment at P-wetherbeei_contig13552:1413..1571+ (Phaeothamnion wetherbeei SAG_119_79)
TCCCGCTGTTTACAAACACGGAATAAAACAGCTCCGGACCAGCTCAGCTT
CAAAGCAGGCGATATAATCACTCTAAAGCGCGACCCCAGCAGCAAAGGAT
GGGGACTAGGCGAGCTCAAGGGCAAGGTAATTAAGATGCGTTGTTCGACC
TGCAACTAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig13552:1413..1571+

>mRNA_P-wetherbeei_contig13552.1.1 ID=mRNA_P-wetherbeei_contig13552.1.1|Name=mRNA_P-wetherbeei_contig13552.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=159bp|location=Sequence derived from alignment at P-wetherbeei_contig13552:1413..1571+ (Phaeothamnion wetherbeei SAG_119_79)
TCCCGCTGTTTACAAACACGGAATAAAACAGCTCCGGACCAGCTCAGCTT
CAAAGCAGGCGATATAATCACTCTAAAGCGCGACCCCAGCAGCAAAGGAT
GGGGACTAGGCGAGCTCAAGGGCAAGGTAATTAAGATGCGTTGTTCGACC
TGCAACTAA
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