mRNA_P-wetherbeei_contig13551.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig13551.1.1
Unique NamemRNA_P-wetherbeei_contig13551.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig13551.1.1 vs. uniprot
Match: D7G5P3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5P3_ECTSI)

HSP 1 Score: 111 bits (277), Expect = 5.680e-26
Identity = 68/123 (55.28%), Postives = 89/123 (72.36%), Query Frame = 1 
Query:    1 QEYAVLRHGGNEKFVNSLHGKQILLEAASKIRTQEVSDLTANLARADALCEELSAALNAERREKLELRNKVGQLEAEVTALEEEFRRRDTSAALVRGRGSNLERRLAGNS-SLRSYLFGGTAE 366
            +EYAVLRHGGN++FVNS HG++IL+E AS IRT+EV+DL   L    AL +EL +AL+AE+ EK  L+ K+  LE EV  ++   RR     A  RGRGSNLERRLAGN+ +LR++LFG  A+
Sbjct:  282 KEYAVLRHGGNKRFVNSQHGREILVETASTIRTKEVADLNRELKEMRALVQELHSALHAEQVEKSNLQAKIVLLEREVEGMDFARRRWLRENASNRGRGSNLERRLAGNTGNLRTFLFGADAK 404
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BLAST of mRNA_P-wetherbeei_contig13551.1.1 vs. uniprot
Match: A0A6H5KE49_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE49_9PHAE)

HSP 1 Score: 77.8 bits (190), Expect = 3.060e-14
Identity = 66/182 (36.26%), Postives = 87/182 (47.80%), Query Frame = 1 
Query:    1 QEYAVLR--------HGGNEKFVNSLHGKQILLEAASKIRTQEV---------------------------------------------------SDLTANLARADALCEELSAALNAERREKLELRNKVGQLEAEVTALEEEFRRRDTSAALVRGRGSNLERRLAGNS-SLRSYLFGGTAE 366
            +EYAVLR        HGGN++FVNS HG++IL E AS IRT+EV                                                   +DL   L     L +EL +AL+AE+ EK  L+ K+  LE E+  ++   RR     A  RGRGSNLERRLAGN+ +LR++LFG  A+
Sbjct:  217 KEYAVLRQGTPWLVRHGGNKRFVNSQHGREILFETASTIRTKEVREGNTQARLCRHIALRARIRMEQRGTRFPSKLHRFPQASVGPTCLLRSHEVADLNRELKEMRGLVQELHSALHAEQVEKSNLQAKIVLLEREIEGMDFARRRWLRENASNRGRGSNLERRLAGNTGNLRTFLFGADAK 398
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig13551.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G5P3_ECTSI5.680e-2655.28Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KE49_9PHAE3.060e-1436.26Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig13551contigP-wetherbeei_contig13551:809..1563 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size366
Hectar predicted targeting categoryother localisation
Exons2
Cds size366
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185990.3230374-CDS-P-wetherbeei_contig13551:808..9641683185990.3230374-CDS-P-wetherbeei_contig13551:808..964Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13551 809..964 -
1683185990.3376057-CDS-P-wetherbeei_contig13551:1353..15631683185990.3376057-CDS-P-wetherbeei_contig13551:1353..1563Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13551 1354..1563 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig13551.1.1prot_P-wetherbeei_contig13551.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig13551 809..1563 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig13551.1.1

>prot_P-wetherbeei_contig13551.1.1 ID=prot_P-wetherbeei_contig13551.1.1|Name=mRNA_P-wetherbeei_contig13551.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=122bp
QEYAVLRHGGNEKFVNSLHGKQILLEAASKIRTQEVSDLTANLARADALC
EELSAALNAERREKLELRNKVGQLEAEVTALEEEFRRRDTSAALVRGRGS
NLERRLAGNSSLRSYLFGGTAE
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mRNA from alignment at P-wetherbeei_contig13551:809..1563-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig13551.1.1 ID=mRNA_P-wetherbeei_contig13551.1.1|Name=mRNA_P-wetherbeei_contig13551.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=755bp|location=Sequence derived from alignment at P-wetherbeei_contig13551:809..1563- (Phaeothamnion wetherbeei SAG_119_79)
CAGGAATACGCCGTGCTGCGCCACGGCGGCAATGAGAAGTTTGTCAATAG
CCTCCACGGCAAGCAGATCCTGCTGGAAGCGGCCAGCAAAATCCGCACAC
AGGAGGTTTCGGACCTGACGGCAAACCTGGCGCGCGCCGATGCGCTCTGC
GAGGAGCTCTCGGCGGCCCTCAACGCCGAGCGCAGGGAGAAGCTCGAGCT
CAGGAACAAGGTAAGCGGTCTTTGGCGGTGGAAGCGGCGGCGGCTTTGGG
GCGGCGGCGACGGTGGCGGTGGCAGTGGCTGTCGTCGCCGCGAGCGCTTG
TCTTCGATGGTTGCGGATGTCTCTTCTTCGCTCTATGTCGCAGGCAAGTA
TGCAGAAAGTATTTGAGCTTTCTTTTTTGCGTTGGTGAATTTAGAGGGGC
GGCGAATCCGAGAGTGCATGGTGAGATCTTGCAGTGAACGCAACTGCTTC
CAAGGAACCAAGGAAGGGATTTAAGAGGGTACAGCTTTAATTAACTCCCC
AACTTGCAGATCCCTCATTTCTATTGCTCTGTTGGCACCGACCTTCCACT
CATGTGCACTCTTTTAACGCCTCCTATTCTCTGCGTAAACTGCCGACAGG
TCGGGCAATTGGAGGCGGAGGTGACGGCTCTGGAGGAGGAGTTCCGCCGC
CGGGACACGAGCGCCGCCCTCGTGCGCGGCCGCGGTTCCAACCTGGAGCG
TCGCTTGGCCGGCAACAGCTCCCTCCGCAGTTACTTGTTTGGCGGCACGG
CAGAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig13551:809..1563-

>mRNA_P-wetherbeei_contig13551.1.1 ID=mRNA_P-wetherbeei_contig13551.1.1|Name=mRNA_P-wetherbeei_contig13551.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=366bp|location=Sequence derived from alignment at P-wetherbeei_contig13551:809..1563- (Phaeothamnion wetherbeei SAG_119_79)
CAGGAATACGCCGTGCTGCGCCACGGCGGCAATGAGAAGTTTGTCAATAG
CCTCCACGGCAAGCAGATCCTGCTGGAAGCGGCCAGCAAAATCCGCACAC
AGGAGGTTTCGGACCTGACGGCAAACCTGGCGCGCGCCGATGCGCTCTGC
GAGGAGCTCTCGGCGGCCCTCAACGCCGAGCGCAGGGAGAAGCTCGAGCT
CAGGAACAAGGTCGGGCAATTGGAGGCGGAGGTGACGGCTCTGGAGGAGG
AGTTCCGCCGCCGGGACACGAGCGCCGCCCTCGTGCGCGGCCGCGGTTCC
AACCTGGAGCGTCGCTTGGCCGGCAACAGCTCCCTCCGCAGTTACTTGTT
TGGCGGCACGGCAGAG
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