mRNA_P-wetherbeei_contig13545.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig13545.1.1
Unique NamemRNA_P-wetherbeei_contig13545.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig13545.1.1 vs. uniprot
Match: A0A0G4II27_PLABS (Uncharacterized protein n=1 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A0G4II27_PLABS)

HSP 1 Score: 71.2 bits (173), Expect = 2.320e-10
Identity = 67/225 (29.78%), Postives = 105/225 (46.67%), Query Frame = 1 
Query:   67 EKPVSGYKFTDSFHADAAAISALLELPPHPSLASSKAGDSKSTVAIRNLVVDAASLKIYLHVLSHTSRITTLDFFNAGISAEGVRAIADAL--PILPCSTLKLDYNPLKSWEQEDQDASPRFALLVRP-SLLRTLSLRGNGITDSGATAIAAALEDITLPLASLNXXXXXXXXXXXXXXXDSLKINGILAGLSLSRNRLGPAAAASCEALLTGYILDEPVRTKRA 732
            ++P +    +  F AD  A    L + PHP LA        + + +    +D  + +     L   + +TT+ F+NAG+S E +R ++  +  P    + L +D+NPLKS    + DA   FA LV P S L+ L+LRGN +TD+ A  I  A+ +    LA+LN                 L+ +  L  +SLS N +G A   +  A +  + L EP   K A
Sbjct:   35 DQPPNPDTSSGDFLADYPAACRQLGVAPHPRLAV-----HANILEVFGFALDLGTARALSLCLPANTTLTTVHFWNAGLSCEVLRLLSATICRPSCAITRLHIDWNPLKS----EGDAGAAFASLVGPKSPLKILTLRGNQLTDAAAHPILDAVGEGG-QLAALNLSTNLLGPDTATQVGLLLRGDRTLQSVSLSHNPVGDAGLVAILAAMRPFPL-EPAEVKNA 248
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BLAST of mRNA_P-wetherbeei_contig13545.1.1 vs. uniprot
Match: A0A0H5R5P2_9EUKA (Uncharacterized protein n=1 Tax=Spongospora subterranea TaxID=70186 RepID=A0A0H5R5P2_9EUKA)

HSP 1 Score: 68.9 bits (167), Expect = 1.250e-9
Identity = 47/146 (32.19%), Postives = 71/146 (48.63%), Query Frame = 1 
Query:   91 FTDSFHADAAAISALLELPPHPSLASSKAGDSKSTVAIRNLVVDAASLKIYLHVLSHTSRITTLDFFNAGISAEGVRAIADALPILPCSTLKLDYNPLKSWEQEDQDASPRFALLVRP-SLLRTLSLRGNGITDSGATAIAAALED 525
            FT +F  D  +    L + PHP L  ++  D+   + +     D  +       L    RI+TL F NAG++A+ +R +A A+P      L LD+NP+ +      DA      LV P S L+ L+LRGN +TD     I +A+ D
Sbjct:   32 FTGNFPVDYRSACGALGVLPHPKLVPTRIDDNNDAIQVFGFEFDLGTAAALTLCLPSCRRISTLQFLNAGLTADVIRLLATAIPQSAVVRLHLDWNPISN-----HDA---LVGLVGPNSPLQFLNLRGNRLTDGAIQPILSAIAD 169
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BLAST of mRNA_P-wetherbeei_contig13545.1.1 vs. uniprot
Match: F4NRW4_BATDJ (Uncharacterized protein n=4 Tax=Batrachochytrium dendrobatidis TaxID=109871 RepID=F4NRW4_BATDJ)

HSP 1 Score: 56.6 bits (135), Expect = 2.570e-5
Identity = 35/109 (32.11%), Postives = 57/109 (52.29%), Query Frame = 1 
Query:  196 VAIRNLVVDAASLKIYLHVLSHTSRITTLDFFNAGISAEGVRAIADALPILPCSTLKLDYNPLKSWEQEDQDASPRFALLVRPSLLRTLSLRGNGITDSGATAIAAALE 522
            + +R   V   +++     ++  S IT L+F+N G++      +A A+P +   TL LD NP           S   + L   S+L++LSLRGNGI+D G  + +AAL+
Sbjct:  198 IEVRGWKVSIPTMEAINLAITACSTITHLNFWNCGLTESHANLLATAIPTVNIRTLALDQNP-------SIPESFYSSFLGDDSMLKSLSLRGNGISDIGVKSFSAALK 299
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig13545.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A0G4II27_PLABS2.320e-1029.78Uncharacterized protein n=1 Tax=Plasmodiophora bra... [more]
A0A0H5R5P2_9EUKA1.250e-932.19Uncharacterized protein n=1 Tax=Spongospora subter... [more]
F4NRW4_BATDJ2.570e-532.11Uncharacterized protein n=4 Tax=Batrachochytrium d... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig13545contigP-wetherbeei_contig13545:863..1768 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog157072.XP_008875802.1
PFAMsLRR_6
Model size906
Max annot lvl2759|Eukaryota
KEGG koko:K09257
Hectar predicted targeting categoryother localisation
Exons1
Evalue8.12e-13
EggNOG OGsKOG4308@1|root,KOG4308@2759|Eukaryota
Descriptioninterleukin-8 biosynthetic process
Cds size906
COG categoryS
BRITEko00000,ko03000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185990.0870552-CDS-P-wetherbeei_contig13545:862..17681683185990.0870552-CDS-P-wetherbeei_contig13545:862..1768Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13545 863..1768 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig13545.1.1prot_P-wetherbeei_contig13545.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig13545 863..1768 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig13545.1.1

>prot_P-wetherbeei_contig13545.1.1 ID=prot_P-wetherbeei_contig13545.1.1|Name=mRNA_P-wetherbeei_contig13545.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=302bp
MTAGSTWTASEGDAAGEALNLKEKPVSGYKFTDSFHADAAAISALLELPP
HPSLASSKAGDSKSTVAIRNLVVDAASLKIYLHVLSHTSRITTLDFFNAG
ISAEGVRAIADALPILPCSTLKLDYNPLKSWEQEDQDASPRFALLVRPSL
LRTLSLRGNGITDSGATAIAAALEDITLPLASLNLFDNAIGDAGAAAIAD
SLKINGILAGLSLSRNRLGPAAAASCEALLTGYILDEPVRTKRATADERI
AAANKAVADAAKKKKSAAPVPMPALAAATVRPDGTAFVRGTRTLAILNLG
NN
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mRNA from alignment at P-wetherbeei_contig13545:863..1768-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig13545.1.1 ID=mRNA_P-wetherbeei_contig13545.1.1|Name=mRNA_P-wetherbeei_contig13545.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=906bp|location=Sequence derived from alignment at P-wetherbeei_contig13545:863..1768- (Phaeothamnion wetherbeei SAG_119_79)
ATGACTGCCGGCTCCACTTGGACCGCCAGCGAAGGCGACGCTGCAGGCGA
AGCTTTGAATCTAAAAGAGAAGCCTGTTTCGGGCTACAAGTTTACCGACA
GTTTCCATGCAGACGCCGCTGCGATCTCTGCTTTGCTGGAATTACCGCCG
CACCCGTCTCTGGCGTCGTCGAAAGCCGGAGATTCTAAGAGCACCGTGGC
GATCCGCAATCTTGTCGTGGATGCGGCAAGTCTAAAGATTTATTTACATG
TCTTATCTCACACGTCCAGAATTACGACACTCGACTTTTTCAACGCCGGG
ATATCGGCAGAAGGAGTGCGAGCCATCGCCGACGCTCTGCCAATCCTTCC
TTGCTCCACCCTGAAACTGGATTACAACCCTTTGAAGAGCTGGGAACAAG
AAGACCAGGATGCGTCACCAAGGTTCGCCTTGCTCGTGCGGCCATCACTG
CTCCGGACCCTGTCGCTGCGCGGCAACGGTATCACCGATTCAGGCGCCAC
CGCCATCGCCGCGGCGCTCGAGGACATCACTCTGCCGCTCGCCTCCCTCA
ACCTCTTCGACAATGCCATCGGCGACGCGGGTGCTGCCGCCATCGCCGAC
AGTCTGAAAATTAACGGCATCTTAGCGGGACTGTCGCTGTCCCGGAACCG
CCTCGGGCCGGCGGCGGCAGCAAGCTGTGAAGCCCTGCTGACTGGTTATA
TACTAGATGAACCAGTGCGGACGAAGCGGGCGACCGCCGACGAGCGCATC
GCCGCCGCCAACAAGGCCGTTGCCGACGCGGCCAAGAAGAAGAAGTCGGC
CGCCCCGGTGCCCATGCCGGCGCTGGCTGCGGCGACTGTTCGGCCGGACG
GGACTGCGTTTGTGAGAGGCACCCGGACTCTCGCCATCCTAAACCTCGGA
AACAAC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig13545:863..1768-

>mRNA_P-wetherbeei_contig13545.1.1 ID=mRNA_P-wetherbeei_contig13545.1.1|Name=mRNA_P-wetherbeei_contig13545.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=906bp|location=Sequence derived from alignment at P-wetherbeei_contig13545:863..1768- (Phaeothamnion wetherbeei SAG_119_79)
ATGACTGCCGGCTCCACTTGGACCGCCAGCGAAGGCGACGCTGCAGGCGA
AGCTTTGAATCTAAAAGAGAAGCCTGTTTCGGGCTACAAGTTTACCGACA
GTTTCCATGCAGACGCCGCTGCGATCTCTGCTTTGCTGGAATTACCGCCG
CACCCGTCTCTGGCGTCGTCGAAAGCCGGAGATTCTAAGAGCACCGTGGC
GATCCGCAATCTTGTCGTGGATGCGGCAAGTCTAAAGATTTATTTACATG
TCTTATCTCACACGTCCAGAATTACGACACTCGACTTTTTCAACGCCGGG
ATATCGGCAGAAGGAGTGCGAGCCATCGCCGACGCTCTGCCAATCCTTCC
TTGCTCCACCCTGAAACTGGATTACAACCCTTTGAAGAGCTGGGAACAAG
AAGACCAGGATGCGTCACCAAGGTTCGCCTTGCTCGTGCGGCCATCACTG
CTCCGGACCCTGTCGCTGCGCGGCAACGGTATCACCGATTCAGGCGCCAC
CGCCATCGCCGCGGCGCTCGAGGACATCACTCTGCCGCTCGCCTCCCTCA
ACCTCTTCGACAATGCCATCGGCGACGCGGGTGCTGCCGCCATCGCCGAC
AGTCTGAAAATTAACGGCATCTTAGCGGGACTGTCGCTGTCCCGGAACCG
CCTCGGGCCGGCGGCGGCAGCAAGCTGTGAAGCCCTGCTGACTGGTTATA
TACTAGATGAACCAGTGCGGACGAAGCGGGCGACCGCCGACGAGCGCATC
GCCGCCGCCAACAAGGCCGTTGCCGACGCGGCCAAGAAGAAGAAGTCGGC
CGCCCCGGTGCCCATGCCGGCGCTGGCTGCGGCGACTGTTCGGCCGGACG
GGACTGCGTTTGTGAGAGGCACCCGGACTCTCGCCATCCTAAACCTCGGA
AACAAC
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