mRNA_P-wetherbeei_contig1354.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1354.1.1
Unique NamemRNA_P-wetherbeei_contig1354.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1354.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1354contigP-wetherbeei_contig1354:3140..4052 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size897
Hectar predicted targeting categorymitochondrion
Exons2
Cds size618
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185989.8803496-UTR-P-wetherbeei_contig1354:3139..32921683185989.8803496-UTR-P-wetherbeei_contig1354:3139..3292Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1354 3140..3292 -
1683185989.922174-UTR-P-wetherbeei_contig1354:3926..40521683185989.922174-UTR-P-wetherbeei_contig1354:3926..4052Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1354 3927..4052 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185989.8962078-CDS-P-wetherbeei_contig1354:3292..36861683185989.8962078-CDS-P-wetherbeei_contig1354:3292..3686Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1354 3293..3686 -
1683185989.9066212-CDS-P-wetherbeei_contig1354:3702..39261683185989.9066212-CDS-P-wetherbeei_contig1354:3702..3926Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1354 3703..3926 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1354.1.1prot_P-wetherbeei_contig1354.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1354 3293..3926 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1354.1.1

>prot_P-wetherbeei_contig1354.1.1 ID=prot_P-wetherbeei_contig1354.1.1|Name=mRNA_P-wetherbeei_contig1354.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=206bp
MTRRFPNMSISAGRTRIAEKSSGRPSKRITRSNRAPRAMTSSKSSIDLSL
PVEDISRNIVRAKFNKLRCDMDTHGRHNWIGSSRPLANPLADKVLPGAAL
NLKCQRWTPFHRYARGADVTALADDDGTPGVRSRRREAVAMAALAATAAA
AAARAAAVFEALAVAKTAGATHWRLQDLWAQRGGGGDDGEGGRGGGGRGR
NHRDI*
back to top

mRNA from alignment at P-wetherbeei_contig1354:3140..4052-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1354.1.1 ID=mRNA_P-wetherbeei_contig1354.1.1|Name=mRNA_P-wetherbeei_contig1354.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=913bp|location=Sequence derived from alignment at P-wetherbeei_contig1354:3140..4052- (Phaeothamnion wetherbeei SAG_119_79)
CTGCAACGGCAGAGCAGAAGAGCGACCGTGCCACCGCGGTGAAGGCGGCG
AGCGAGCACAGTGGGGCGTCCAGCGAGGCCCAGCGTCAGAGCGCTTTCTT
CTGGCTGAAGCAGTGCATCACGACAAATGACGAGGCGTTTTCCGAATATG
TCTATCTCAGCAGGGAGGACAAGAATCGCGGAAAAGTCATCTGGACGTCC
CTCGAAACGCATAACCAGGAGCAATCGGGCGCCGCGAGCAATGACCTCCT
CAAAGAGTTCCATCGACTTGTCGCTACCGGTGGAGGATATCTCGCGGAAC
ATCGTCCGCGCTAAGTTCAACAAGCTTCGCTGCGACATGGACACGCACGG
CTGCAAGCAGAGCGACAAGGCACAATTGGATCGGCTCCTCGAGACCCCTA
GCAAATCCGCTCGCTGACAAGGTCTTGCCCGGCGCTGCATTGAATCTAAA
GTGCCAACGGTGGACGCCGTTTCATCGATATGCGAGAGGCGCAGACGTCA
CCGCGCTCGCAGACGATGACGGGACTCCCGGCGTTCGTTCTCGGCGGCGA
GAGGCGGTGGCGATGGCAGCGTTGGCAGCAACGGCGGCAGCGGCAGCGGC
GAGGGCAGCAGCCGTTTTTGAAGCGCTGGCCGTAGCCAAAACAGCAGGAG
CAACGCACTGGCGTCTGCAAGACCTCTGGGCGCAGCGCGGCGGCGGCGGT
GACGATGGCGAAGGCGGACGAGGTGGAGGCGGCCGCGGTCGCAACCACAG
GGACATATAGGGTCCGGGCATGCCGGCCGTGTGCTACCACGGACGAGTAT
TTTGACAGCGGCCGTTGACGCTTATTTCGGGTGCTACCGTACGACGGTCA
CAGCGCCTATGCCTGCACGGTGCGAGCGAACGATGACCTGCCCCCTCACC
GCAATAAAGATGA
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig1354:3140..4052-

>mRNA_P-wetherbeei_contig1354.1.1 ID=mRNA_P-wetherbeei_contig1354.1.1|Name=mRNA_P-wetherbeei_contig1354.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=618bp|location=Sequence derived from alignment at P-wetherbeei_contig1354:3140..4052- (Phaeothamnion wetherbeei SAG_119_79)
ATGACGAGGCGTTTTCCGAATATGTCTATCTCAGCAGGGAGGACAAGAAT
CGCGGAAAAGTCATCTGGACGTCCCTCGAAACGCATAACCAGGAGCAATC
GGGCGCCGCGAGCAATGACCTCCTCAAAGAGTTCCATCGACTTGTCGCTA
CCGGTGGAGGATATCTCGCGGAACATCGTCCGCGCTAAGTTCAACAAGCT
TCGCTGCGACATGGACACGCACGGAAGGCACAATTGGATCGGCTCCTCGA
GACCCCTAGCAAATCCGCTCGCTGACAAGGTCTTGCCCGGCGCTGCATTG
AATCTAAAGTGCCAACGGTGGACGCCGTTTCATCGATATGCGAGAGGCGC
AGACGTCACCGCGCTCGCAGACGATGACGGGACTCCCGGCGTTCGTTCTC
GGCGGCGAGAGGCGGTGGCGATGGCAGCGTTGGCAGCAACGGCGGCAGCG
GCAGCGGCGAGGGCAGCAGCCGTTTTTGAAGCGCTGGCCGTAGCCAAAAC
AGCAGGAGCAACGCACTGGCGTCTGCAAGACCTCTGGGCGCAGCGCGGCG
GCGGCGGTGACGATGGCGAAGGCGGACGAGGTGGAGGCGGCCGCGGTCGC
AACCACAGGGACATATAG
back to top