mRNA_P-wetherbeei_contig1353.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1353.1.1
Unique NamemRNA_P-wetherbeei_contig1353.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig1353.1.1 vs. uniprot
Match: D2VEK0_NAEGR (RING-type domain-containing protein (Fragment) n=1 Tax=Naegleria gruberi TaxID=5762 RepID=D2VEK0_NAEGR)

HSP 1 Score: 63.9 bits (154), Expect = 1.450e-9
Identity = 24/48 (50.00%), Postives = 33/48 (68.75%), Query Frame = 1 
Query:  781 ACAICLLNFAKGDQLVRVTCAHVFHCECVDTWLARHVTCPLCGLSLET 924
            +CA+C+ +F + D+L+R+ C HVFH +CV TWL  H TCP C   L T
Sbjct:    8 SCAVCICDFEECDELIRLPCGHVFHKDCVSTWLNEHNTCPTCRYELPT 55
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BLAST of mRNA_P-wetherbeei_contig1353.1.1 vs. uniprot
Match: A0A2T7EJE3_9POAL (RING-type domain-containing protein n=2 Tax=Panicum hallii TaxID=206008 RepID=A0A2T7EJE3_9POAL)

HSP 1 Score: 63.9 bits (154), Expect = 1.600e-8
Identity = 36/87 (41.38%), Postives = 46/87 (52.87%), Query Frame = 1 
Query:  703 DKFESVTVGSSPPGEDDAXXXXXXXAACAICLLNFAKGDQLVRVT-CAHVFHCECVDTWLARHVTCPLCGLSLETLAAGETCGGAAA 960
            +K E    G+  PG  DA       A CA+CL ++A GD+L R+  C H FH  C+D WL R  TCP+C  S     AG+  G  AA
Sbjct:   72 EKDEEEAAGAGAPGGSDA-------ARCAVCLADYADGDELRRMPDCRHAFHRGCIDQWLRRRPTCPVCRASPPP--AGKAAGSTAA 149
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BLAST of mRNA_P-wetherbeei_contig1353.1.1 vs. uniprot
Match: A0A0K9S0F8_SPIOL (RING-type domain-containing protein n=2 Tax=Spinacia oleracea TaxID=3562 RepID=A0A0K9S0F8_SPIOL)

HSP 1 Score: 65.1 bits (157), Expect = 4.080e-8
Identity = 29/66 (43.94%), Postives = 40/66 (60.61%), Query Frame = 1 
Query:  712 ESVTVGSSPPGEDDAXXXXXXXAACAICLLNFAKGDQLVRVT-CAHVFHCECVDTWLARHVTCPLC 906
            ES+ V +  PG ++A         CAICL  F + + +  +  C HVFH EC+DTWL+ H+TCPLC
Sbjct:  124 ESLPVYAYFPGAEEAKQRMIDEVECAICLSEFEEKEWIKEIPYCGHVFHVECIDTWLSNHMTCPLC 189
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BLAST of mRNA_P-wetherbeei_contig1353.1.1 vs. uniprot
Match: A0A7J7PQ72_9CHLO (RING-type domain-containing protein (Fragment) n=1 Tax=Scenedesmus sp. NREL 46B-D3 TaxID=2650976 RepID=A0A7J7PQ72_9CHLO)

HSP 1 Score: 60.5 bits (145), Expect = 6.790e-8
Identity = 22/41 (53.66%), Postives = 28/41 (68.29%), Query Frame = 1 
Query:  784 CAICLLNFAKGDQLVRVTCAHVFHCECVDTWLARHVTCPLC 906
            CAIC  +FA  D + ++ C H +HC C+D WL R VTCPLC
Sbjct:   51 CAICFEDFADNDDVKQLPCGHFYHCGCIDEWLLRDVTCPLC 91
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BLAST of mRNA_P-wetherbeei_contig1353.1.1 vs. uniprot
Match: T1MLJ7_TRIUA (RING-type domain-containing protein n=1 Tax=Triticum urartu TaxID=4572 RepID=T1MLJ7_TRIUA)

HSP 1 Score: 60.8 bits (146), Expect = 8.190e-8
Identity = 28/60 (46.67%), Postives = 35/60 (58.33%), Query Frame = 1 
Query:  784 CAICLLNFAKGDQL-VRVTCAHVFHCECVDTWLARHVTCPLCGLSLETLAAGETCGGAAA 960
            CA+CL  F   D L +   C+H FH +C+D WLA HVTCP+C  +L   A      GAAA
Sbjct:   54 CAVCLSEFDDDDTLRLLPKCSHAFHADCIDAWLASHVTCPVCRANLVPGADAPVASGAAA 113
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BLAST of mRNA_P-wetherbeei_contig1353.1.1 vs. uniprot
Match: A0A250WQV9_9CHLO (RING-type domain-containing protein n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250WQV9_9CHLO)

HSP 1 Score: 64.3 bits (155), Expect = 8.250e-8
Identity = 27/52 (51.92%), Postives = 34/52 (65.38%), Query Frame = 1 
Query:  784 CAICLLNFAKGDQLVRVTCAHVFHCECVDTWLARHVTCPLCGLSLETLAAGE 939
            CA+CL+ +A G+ L  + C H FHCECVDTWL R  TCPLC   +   A G+
Sbjct:  222 CALCLVGYAPGNLLRGLPCGHSFHCECVDTWLLRKGTCPLCRFQINN-AVGD 272
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BLAST of mRNA_P-wetherbeei_contig1353.1.1 vs. uniprot
Match: A0A6A1VE15_9ROSI (RING-H2 finger protein ATL7 n=1 Tax=Morella rubra TaxID=262757 RepID=A0A6A1VE15_9ROSI)

HSP 1 Score: 63.5 bits (153), Expect = 9.630e-8
Identity = 25/54 (46.30%), Postives = 35/54 (64.81%), Query Frame = 1 
Query:  784 CAICLLNFAKGDQLVRV-TCAHVFHCECVDTWLARHVTCPLCGLSLETLAAGET 942
            C++CL ++   D+L  + TC H FH +C+D WL  H TCPLC LSL ++A   T
Sbjct:  100 CSVCLADYQAEDRLQHIPTCGHAFHMDCIDNWLTTHTTCPLCRLSLLSVAKAST 153
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BLAST of mRNA_P-wetherbeei_contig1353.1.1 vs. uniprot
Match: A0A7C9AWP6_OPUST (RING-type E3 ubiquitin transferase (Fragment) n=1 Tax=Opuntia streptacantha TaxID=393608 RepID=A0A7C9AWP6_OPUST)

HSP 1 Score: 60.1 bits (144), Expect = 9.760e-8
Identity = 24/42 (57.14%), Postives = 30/42 (71.43%), Query Frame = 1 
Query:  784 CAICLLNFAKGDQLVRVT-CAHVFHCECVDTWLARHVTCPLC 906
            CAICL  F + + +  +  C HVFH EC+DTWL+ HVTCPLC
Sbjct:    8 CAICLSEFEEREWIKEIPYCGHVFHVECIDTWLSSHVTCPLC 49
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BLAST of mRNA_P-wetherbeei_contig1353.1.1 vs. uniprot
Match: A0A8K0MWU0_COCNU (E3 ubiquitin-protein ligase n=1 Tax=Cocos nucifera TaxID=13894 RepID=A0A8K0MWU0_COCNU)

HSP 1 Score: 64.3 bits (155), Expect = 1.310e-7
Identity = 31/60 (51.67%), Postives = 39/60 (65.00%), Query Frame = 1 
Query:  784 CAICLLNFAKGDQLVRVT-CAHVFHCECVDTWLARHVTCPLCGLSLET--LAAGETCGGA 954
            CA+CL  F+  D L R+  C HVFH +C+D WLA HVTCP+C  +L    +AA  T GGA
Sbjct:  135 CAVCLAEFSDDDTLRRLPKCCHVFHHDCIDAWLASHVTCPVCRSNLADPEVAAATTYGGA 194
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BLAST of mRNA_P-wetherbeei_contig1353.1.1 vs. uniprot
Match: A0A7J9BML8_GOSGO (RING-type domain-containing protein n=1 Tax=Gossypium gossypioides TaxID=34282 RepID=A0A7J9BML8_GOSGO)

HSP 1 Score: 58.9 bits (141), Expect = 1.310e-7
Identity = 26/49 (53.06%), Postives = 34/49 (69.39%), Query Frame = 1 
Query:  784 CAICLLNFAKGDQLVRVT--CAHVFHCECVDTWLARHVTCPLCGLSLET 924
            CA+CL  F + D+ +R+   C HVFH EC+D WLA HVTCP+C  +L T
Sbjct:   12 CAVCLNEF-EDDETLRLIPKCDHVFHAECIDPWLASHVTCPVCRANLAT 59
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1353.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D2VEK0_NAEGR1.450e-950.00RING-type domain-containing protein (Fragment) n=1... [more]
A0A2T7EJE3_9POAL1.600e-841.38RING-type domain-containing protein n=2 Tax=Panicu... [more]
A0A0K9S0F8_SPIOL4.080e-843.94RING-type domain-containing protein n=2 Tax=Spinac... [more]
A0A7J7PQ72_9CHLO6.790e-853.66RING-type domain-containing protein (Fragment) n=1... [more]
T1MLJ7_TRIUA8.190e-846.67RING-type domain-containing protein n=1 Tax=Tritic... [more]
A0A250WQV9_9CHLO8.250e-851.92RING-type domain-containing protein n=1 Tax=Chlamy... [more]
A0A6A1VE15_9ROSI9.630e-846.30RING-H2 finger protein ATL7 n=1 Tax=Morella rubra ... [more]
A0A7C9AWP6_OPUST9.760e-857.14RING-type E3 ubiquitin transferase (Fragment) n=1 ... [more]
A0A8K0MWU0_COCNU1.310e-751.67E3 ubiquitin-protein ligase n=1 Tax=Cocos nucifera... [more]
A0A7J9BML8_GOSGO1.310e-753.06RING-type domain-containing protein n=1 Tax=Gossyp... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1353contigP-wetherbeei_contig1353:682..2472 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog4513.MLOC_64720.1
PFAMszf-RING_2
Model size1241
Max annot lvl35493|Streptophyta
Hectar predicted targeting categorysignal peptide
Exons4
Evalue6.62e-10
EggNOG OGsKOG0800@1|root,KOG0800@2759|Eukaryota,37IQH@33090|Viridiplantae,3G7HZ@35493|Streptophyta,3M3K2@4447|Liliopsida,3IFRX@38820|Poales
DescriptionAnaphase-promoting complex subunit 11 RING-H2 finger
Cds size705
COG categoryO
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185989.4469817-UTR-P-wetherbeei_contig1353:681..9651683185989.4469817-UTR-P-wetherbeei_contig1353:681..965Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1353 682..965 +
1683185989.4897945-UTR-P-wetherbeei_contig1353:2220..24721683185989.4897945-UTR-P-wetherbeei_contig1353:2220..2472Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1353 2221..2472 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185989.4574864-CDS-P-wetherbeei_contig1353:1098..11821683185989.4574864-CDS-P-wetherbeei_contig1353:1098..1182Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1353 1099..1182 +
1683185989.4659712-CDS-P-wetherbeei_contig1353:1377..17231683185989.4659712-CDS-P-wetherbeei_contig1353:1377..1723Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1353 1378..1723 +
1683185989.4755242-CDS-P-wetherbeei_contig1353:1945..22201683185989.4755242-CDS-P-wetherbeei_contig1353:1945..2220Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1353 1946..2220 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1353.1.1prot_P-wetherbeei_contig1353.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1353 1099..2220 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1353.1.1

>prot_P-wetherbeei_contig1353.1.1 ID=prot_P-wetherbeei_contig1353.1.1|Name=mRNA_P-wetherbeei_contig1353.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=235bp
MILLLFLIVVVLLAGFVSRSCCAKFCPQLLLGEPLPRRDGGGNSGGGSGS
GGAREMVAVGVSSDARKSFVVFELQKKSLKRSVMTEASVKFSSLEDKFES
VTVGSSPPGEDDANEDDDGGAACAICLLNFAKGDQLVRVTCAHVFHCECV
DTWLARHVTCPLCGLSLETLAAGETCGGAAAAGAAAAGATGVPAGAAAAH
AASIAVAAAPVASIAPSESTGRSLFRGNRWLLAE*
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mRNA from alignment at P-wetherbeei_contig1353:682..2472+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1353.1.1 ID=mRNA_P-wetherbeei_contig1353.1.1|Name=mRNA_P-wetherbeei_contig1353.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1791bp|location=Sequence derived from alignment at P-wetherbeei_contig1353:682..2472+ (Phaeothamnion wetherbeei SAG_119_79)
ATTCGGAATGCCATTAACTCGCGGGTCGTTAAGCCCACAATGCGCGCCGC
CCGCCGCCGCCGCTTACGACGCCGCCCTCACCCCCGACACCCCATTGCCA
GCTGCTATCCGAGAAAATGCCGAGAAGATCCGGGACTGATTTATAATAGG
ACAAGAGGAAATAACACGCCGTAACTTTAAACAAACAGGCATTCCTGCCT
CCCAAGGCCTAGCGTCTATTTCTAAAAAGAAGCCATTCCTACCCGCGGCG
CTCTAAAGCTCAAGTAATCGTTTCCTCTAGCGAGGTGTGTCTTATCCGTG
TCGCCGCGATCAACCAACCACTCGCTCACTTTTCGTTCCGTCCTCTCTCT
TCTCGTTGTTCGCCTCTCTATCCACTTTTTTCTCTCCTTCCTTGTCACCT
CTCCTCTCGGTCTTCAGATGATTTTGCTTCTCTTTTTGATCGTGGTTGTT
CTTCTAGCTGGCTTCGTTTCTCGGTCCTGCTGTGCGAAATTTTGTCCTCA
GGTGAGACCCACTTTAACTTAAGTGATTCGCAAAGGTCTGGATGAAGAAG
CGAATTGCGACTCCTGTTAGAGGCTTATGACTGCTTTAATTGAAGCAACT
GAATTCAAAGAAAATACCACTGTCCTTTGCCAAAGTCGATCGGAAGAAGC
AAGTGCAAAAAAGACTTAAGTTTTATCGTGCGTTGTGTGCCTGCAGTTGT
TGCTTGGCGAGCCACTTCCAAGGCGCGACGGCGGTGGCAACAGCGGCGGC
GGCAGCGGCAGCGGCGGTGCCCGGGAAATGGTTGCGGTGGGTGTGAGCAG
TGATGCCCGAAAGTCGTTTGTAGTATTTGAACTGCAAAAGAAGTCGCTTA
AGCGATCTGTAATGACCGAAGCCAGTGTCAAGTTCAGCTCCTTGGAGGAT
AAGTTCGAGAGCGTCACAGTCGGCTCTTCTCCTCCTGGGGAAGACGATGC
GAACGAAGACGACGATGGCGGCGCCGCGTGCGCCATCTGTCTCCTAAACT
TCGCGAAAGGAGATCAGCTTGTCCGCGTGACCTGTGCGCATGGTAAGTTA
TGCAGGTGGCAGCTAGAGCAGTGGTTACGATGGTGGCGGGCAGCAGCGGC
AGGCAGCGGCGACGAAAGCAGTGGCGGACGGCAGCGGTGGCGTGCTGCGC
CGTGCGTGGCGTTTTCCTCCATTTCCATACTCTCTGCTGCTCAACAACCT
TCAACCTGTACCACCTGATGCCCTCTCTCCTTCGGCTTCCACTTTTCTCT
ACGCAATCTTCCAGTTTTTCACTGTGAATGCGTGGACACTTGGTTAGCGC
GACATGTCACGTGCCCATTGTGCGGCTTGTCATTGGAAACTCTTGCGGCT
GGCGAAACGTGCGGCGGTGCTGCCGCCGCTGGTGCTGCCGCCGCGGGTGC
CACCGGCGTCCCCGCCGGCGCCGCTGCCGCACATGCTGCCTCCATCGCCG
TTGCAGCTGCCCCCGTTGCGAGTATAGCGCCCAGCGAGAGTACGGGAAGG
TCGTTGTTTAGGGGCAACAGGTGGCTTTTGGCTGAGTGAGCCACAATTGA
AAAGTGTAAATAGAGTGCGAGGCTTTCCCGTGGAGTCCCGCGGAGGATAG
AGCTGTTTCATAGACAGGAAACACGTTTGGCGCGAGCACTGTTTCGTAGT
GCCCCTTGGTAGTCCCAGCCGACCGTTCGAAAATGCGTTCTTCCATATTC
TGCGCGCACTTTTTTCTTGGCTTCCCGATAAACTGCTACGGAAAACGGAA
GAGACGAAGAATATTCGCAAGCAGTGCAAGCGAAAATCCTC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1353:682..2472+

>mRNA_P-wetherbeei_contig1353.1.1 ID=mRNA_P-wetherbeei_contig1353.1.1|Name=mRNA_P-wetherbeei_contig1353.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=705bp|location=Sequence derived from alignment at P-wetherbeei_contig1353:682..2472+ (Phaeothamnion wetherbeei SAG_119_79)
ATGATTTTGCTTCTCTTTTTGATCGTGGTTGTTCTTCTAGCTGGCTTCGT
TTCTCGGTCCTGCTGTGCGAAATTTTGTCCTCAGTTGTTGCTTGGCGAGC
CACTTCCAAGGCGCGACGGCGGTGGCAACAGCGGCGGCGGCAGCGGCAGC
GGCGGTGCCCGGGAAATGGTTGCGGTGGGTGTGAGCAGTGATGCCCGAAA
GTCGTTTGTAGTATTTGAACTGCAAAAGAAGTCGCTTAAGCGATCTGTAA
TGACCGAAGCCAGTGTCAAGTTCAGCTCCTTGGAGGATAAGTTCGAGAGC
GTCACAGTCGGCTCTTCTCCTCCTGGGGAAGACGATGCGAACGAAGACGA
CGATGGCGGCGCCGCGTGCGCCATCTGTCTCCTAAACTTCGCGAAAGGAG
ATCAGCTTGTCCGCGTGACCTGTGCGCATGTTTTTCACTGTGAATGCGTG
GACACTTGGTTAGCGCGACATGTCACGTGCCCATTGTGCGGCTTGTCATT
GGAAACTCTTGCGGCTGGCGAAACGTGCGGCGGTGCTGCCGCCGCTGGTG
CTGCCGCCGCGGGTGCCACCGGCGTCCCCGCCGGCGCCGCTGCCGCACAT
GCTGCCTCCATCGCCGTTGCAGCTGCCCCCGTTGCGAGTATAGCGCCCAG
CGAGAGTACGGGAAGGTCGTTGTTTAGGGGCAACAGGTGGCTTTTGGCTG
AGTGA
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