mRNA_P-wetherbeei_contig13520.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig13520.1.1
Unique NamemRNA_P-wetherbeei_contig13520.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig13520.1.1 vs. uniprot
Match: D7FNP3_ECTSI (Poly(A) binding protein, cytoplasmic 4-like n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNP3_ECTSI)

HSP 1 Score: 241 bits (616), Expect = 1.040e-71
Identity = 156/326 (47.85%), Postives = 194/326 (59.51%), Query Frame = 1
Query:    1 LHDEPIAPDESNLFVGDLARGLVEEELERAFAVHGTVAAVSIKRDRATGKNLGYGFVKMSTHDEAVSAKLAMHETELHGRKVRVGWAQKNTSLFVGGLDD-IVTTEALRLMFAEYGPIDEEHTYVKNG-KYGFAKLKYRLHAEAARKDLNSKPVVNG--HPLKVEWNNVGGTTQHHGRGGAXXXXXXXSGLGSNSPYGTRILP--------------------AHG--------AHSVHVQFEGEQ--VRAQSVVPGRS------PGAAAVAAASATGGSAPSVRR--RFYAFVHFPDTPEGSRGAAAAVEALNGTTFDELRVTCS 852
            L D+P  P+E NLFVGDLAR L EE+LE+AF  HG V +VSIKRDRATGKNLGYGFVK+S+H EA +AK AM   EL GR+VRVGWAQKNTSL+VGGL+   +TTE L   FA +GP+D+E T +K G K+GF K +YRLHAEAA+K+LN +P  +G    L++EWN+V  + Q     G+     XX                                   AH         +H+VHVQFEG+Q  V A + V  R       P    V  AS   G +P  R+  R +AFVHFP TP+G R AA A++ LNGTT  ELRV C+
Sbjct:  195 LKDDPGTPEECNLFVGDLARNLTEEKLEKAFEQHGRVMSVSIKRDRATGKNLGYGFVKLSSHQEARAAKEAMQGVELGGRRVRVGWAQKNTSLYVGGLEGGAITTEMLVREFARFGPLDKELTTIKPGAKFGFVKYRYRLHAEAAKKELNERPAFDGLCPSLEIEWNSVESSAQASETAGSEKSTAXXXXXXXXXXXXXXXXKEXXXXXXXXXXXXXXXXXXXAHSRHPRGEVSSHTVHVQFEGDQGHVSAVNEVMIRKCFTKWEPVVDIVIPASRFNGVSPGPRQLPRCWAFVHFPPTPDGERAAADAIKGLNGTTISELRVHCT 520          
BLAST of mRNA_P-wetherbeei_contig13520.1.1 vs. uniprot
Match: A0A6H5L4J2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4J2_9PHAE)

HSP 1 Score: 241 bits (614), Expect = 1.700e-70
Identity = 154/326 (47.24%), Postives = 192/326 (58.90%), Query Frame = 1
Query:    1 LHDEPIAPDESNLFVGDLARGLVEEELERAFAVHGTVAAVSIKRDRATGKNLGYGFVKMSTHDEAVSAKLAMHETELHGRKVRVGWAQKNTSLFVGGLDD-IVTTEALRLMFAEYGPIDEEHTYVKNG-KYGFAKLKYRLHAEAARKDLNSKPVVNG--HPLKVEWNNVGGTTQHHGRGGAXXXXXXXS--------------------GLGSNSPYGTRILPAHG--------AHSVHVQFEGEQ--VRAQSVVPGRS------PGAAAVAAASATGGSAPSVRR--RFYAFVHFPDTPEGSRGAAAAVEALNGTTFDELRVTCS 852
            L D+P  P+E NLFVGDLAR L EE+LE+AF  HG V +VSIKRDRATGKNLGYGFVK+S+H EA +AK AM   EL GR+VRVGWAQKNTSL+VGGL+   +TTE L   FA +GP+D+E T +K G K+GF K +YRLHAEAA+K+LN +P  +G    L++EWN+V  + Q     G+                                          AH         +H+VHVQFEG+Q  V A + V  R       P    V  AS   G +P  R+  R +AFVHFP TP+G R AA A++ LNGTT  ELRV C+
Sbjct:   58 LKDDPGTPEECNLFVGDLARNLTEEKLEKAFEQHGRVMSVSIKRDRATGKNLGYGFVKLSSHQEARAAKEAMQGVELGGRRVRVGWAQKNTSLYVGGLEGGAITTEMLVREFARFGPLDKELTTIKPGAKFGFVKYRYRLHAEAAKKELNERPAFDGLCPSLEIEWNSVESSAQASETAGSEKSTAEDRTXXXXXXXXXXXXKXXXXXXXXXXXXXXXXXXXXAHSRHPRGEVSSHTVHVQFEGDQGHVSAVNEVMIRKCFTKWEPVVDIVIPASRFNGVSPGPRQLPRCWAFVHFPPTPDGERAAANAIKDLNGTTISELRVHCT 383          
BLAST of mRNA_P-wetherbeei_contig13520.1.1 vs. uniprot
Match: L8H825_ACACA (RNA recognition motif domain containing protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8H825_ACACA)

HSP 1 Score: 164 bits (415), Expect = 3.150e-44
Identity = 97/279 (34.77%), Postives = 150/279 (53.76%), Query Frame = 1
Query:   25 DESNLFVGDLARGLVEEELERAFAVHGTVAAVSIKRDRATGKNLGYGFVKMSTHDEAVSAKLAMHETELHGRKVRVGWAQKNTSLFVGGLDDIVTTEALRLMFAEYGPIDEEHTYVKNGKYGFAKLKYRLHAEAARKDLNSKPVVNGHPLKVEWNNVGGTTQHHGRGGAXXXXXXXSGLGSNSPYGTRILPAHGAHSVHVQFEGEQVRA--QSVVPGRSPGAAAVAAASATGGSAPSVRRRFYAFVHFPDTPEGSRGAAAAVEALNGTTFDELRVTCSF 855
            DE  LF+GDLARGL E++L  AF   G ++ V IKRDR T  +LGYGFV + + ++A +AK AMH   + GR +R+GWAQKNT+LF+G LD  +T+  LR +F ++GPI EE T+VKN  YGF + ++R HAE A++++N+K V+    +++ W +                                    +  H VH+QFE  +  A  +S V  +      V + +         + R + F+++ DT  G   AA A+  LN +    +R+ C++
Sbjct:   61 DERCLFIGDLARGLNEDQLREAFDPFGVIS-VEIKRDRVTNYSLGYGFVLLKSREDAGAAKKAMHRQVVGGRAIRIGWAQKNTNLFIGDLDPSITSAQLREVFRQFGPIYEEETFVKNRNYGFVRFRHRKHAEMAKREMNNK-VLGARAIRIGWGDAN----------------------------------YQRHCVHIQFEPAESEALTESEVIAKFEEFGTVMSVNLPRNQG---QLRGFGFIYYDDTDAGENSAARAITTLNNSPICGVRIQCNY 300          
BLAST of mRNA_P-wetherbeei_contig13520.1.1 vs. uniprot
Match: A0A7S0TF52_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Elphidium margaritaceum TaxID=933848 RepID=A0A7S0TF52_9EUKA)

HSP 1 Score: 146 bits (368), Expect = 2.120e-38
Identity = 107/293 (36.52%), Postives = 147/293 (50.17%), Query Frame = 1
Query:   22 PDESNLFVGDLARGLVEEELERAFAVHGTVAAVSIKRDRATGKNLGYGFVKMSTHDEAVSAKLAMHETELHGRKVRVGWAQKNTSLFV---GGLDDIVTTEALRLMFAEYGPIDEEHTYVKNGKYGFAKLKYRLHAEAARKDLNSKPVV--NGH----PLKVEWNNVGGTTQHHGRGGAXXXXXXXSGLGSNSPYGTRILPAHGAHSVHVQFEGEQVRAQSV------VPGRSPGAAAVAAASATGGSAPSVRRRFYAFVHFPDTPEGSRGAAAAVEALNGTTFDELRVTCSF 855
            PDES+LF+GDL+R + E+ L + F   G V  V IKRD+ T  NLGYGFVK      A  AK  ++  E+ GR +R+GWAQKNT+LFV   G ++  +T E LR +F+E+GPI EE T+VK  KYGF K K+RLHAE A+  L+ K ++  NG+    P+++ W +    TQ +                                 VHVQFE  Q  A SV         +      V   S    S    R + Y F+HF +  EG   AA A+  L  +    + + C+F
Sbjct:    2 PDESSLFIGDLSRSVNEDMLRKLFEQLGEVE-VDIKRDKVTKNNLGYGFVKFRNRCHAEQAKRKLNGLEIAGRAIRIGWAQKNTNLFVCLVGDVERHITGEHLREIFSEFGPIYEEDTFVKRNKYGFVKFKHRLHAEKAKAALDGKHLLTKNGYKTMKPVRIGWGDA--NTQRN--------------------------------CVHVQFE--QNSASSVDLKEEDFKQQFQRFGVVNKVSLPRYS--DKRLKGYGFIHFEENDEGEESAARAITELTASPIKGVVIMCNF 255          
BLAST of mRNA_P-wetherbeei_contig13520.1.1 vs. uniprot
Match: W7TSQ6_9STRA (Tia1 cytotoxic granule-associated rna binding protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TSQ6_9STRA)

HSP 1 Score: 151 bits (382), Expect = 4.830e-38
Identity = 102/295 (34.58%), Postives = 154/295 (52.20%), Query Frame = 1
Query:   25 DESNLFVGDLARGLVEEELERAFAVHGTVAAVSIKRDRATGKNLGYGFVKMSTHDEAVSAKLAMHETELHGRKVRVGWAQKNTSLFVGGLDDIVTTEALRLMFAEYGPIDEEHTYVKNGK---YGFAKLKYRLHAEAARKDLNSKPVVNG-HPLKVEWNNVGGTTQHHGRGGAXXXXXXXSG--LGSNSPYGTRILPAHGAHSVHVQFEG---EQVRAQSVVPGR-SPGAAAVAAASATG--------GSAPSVRRRFYAFVHFPDTPEGSRGAAAAVEALNGTTFDELRVTCSF 855
            D+  LF+GDLARGL E E+ +AFA  G V  V IKRD+ T +NLGYGFV+MS+H++A  AK  M   ++ GR++R+GWAQ+NT+LF+G LD+    E L   F  +G +    +Y++ GK   YG  K   R  AE AR++++ + + +G  P++V W++    T+  G           S   +    P    +L +   +SVHV FE    E +  ++++ G  +P    +A     G            S  RR Y FVHF  +  G   A  A+  L G     +R+ C+F
Sbjct:  103 DDCILFIGDLARGLTEREVAQAFAAVGNVEMVDIKRDKVTMRNLGYGFVQMSSHEQAAVAKERMQGADIQGRRIRIGWAQRNTTLFIGDLDESTNVEDLHRTFGPFGLLYTNDSYLRQGKCGKYGSVKFMSRKDAETARREMHGRVLRDGTRPIRVVWHHPQTITKKTGLSVPLPSNEQHSRELVHIPPPPPAGVLVSSRPYSVHVHFEADGMENLVTENLIYGLFAPFGQIIAVILPQGPGILCSDQNEDVSCCRRGYGFVHFTGSALGRLCAIEAIRTLQGEIVAGIRLQCAF 397          
BLAST of mRNA_P-wetherbeei_contig13520.1.1 vs. uniprot
Match: A0A7S0DL40_9EUKA (Hypothetical protein n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0DL40_9EUKA)

HSP 1 Score: 148 bits (373), Expect = 8.080e-38
Identity = 97/283 (34.28%), Postives = 145/283 (51.24%), Query Frame = 1
Query:   37 LFVGDLARGLVEEELERAFAVHGTVAAVSIKRDRATGKNLGYGFVKMSTHDEAVSAKLAMHETELHGRKVRVGWAQKNTSLFVGGLDDIVTTEALRLMFAEYGPIDEEHTYVKNGK-YGFAKLKYRLHAEAARKDLNSKPVVNG-HPLKVEWNNVGGTTQHHGRGGAXXXXXXXSGLGSNSPYGTRILPAHGAHSVHVQFE-GEQVRA-------QSVVPGRSPGAAAVAAASATGGSAPSVRRRFYAFVHFPDTPEGSRGAAAAVEALNGTTFDELRVTCSF 855
            +FVGDL+R + +++L     +HG+V  V IKRDR T  NLGYGFV+  TH++A+ AK A+H  E+ GRK+R GWAQ+NT+LFVG LD+ +     R  F+ YG + ++ TY K  K +G  K K R +AE A+ +LN K +     P++V W   G T+                                  H VHV+F+ G++V++       + V+         V   +    S  +++   Y FVHF DT +G   A  A+  L+GT    L V C++
Sbjct:   77 IFVGDLSRTVKDKDLRAVMELHGSVVNVDIKRDRVTNNNLGYGFVQFETHEQALKAKKALHGVEVSGRKIRTGWAQRNTTLFVGDLDNTIDATVYRTAFSRYGNLVDDETYFKVDKGFGMVKFKTRENAETAKVELNGKRIGQSKRPVRVIW---GDTSVQK-------------------------------HCVHVKFDVGKEVKSIQESEISEDVLQKVFQEYGQVLTVNLPRHSDNTLKG--YGFVHFEDTEKGEESAKKAIANLSGTKIGRLVVQCNY 323          
BLAST of mRNA_P-wetherbeei_contig13520.1.1 vs. uniprot
Match: A0A7S3Z8S4_9EUKA (Hypothetical protein n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S3Z8S4_9EUKA)

HSP 1 Score: 144 bits (363), Expect = 3.960e-36
Identity = 98/284 (34.51%), Postives = 138/284 (48.59%), Query Frame = 1
Query:   37 LFVGDLARGLVEEELERAFAVHGTVAAVSIKRDRATGKNLGYGFVKMSTHDEAVSAKLAMHETELHGRKVRVGWAQKNTSLFVGGLDDIVTTEALRLMFAEYGPIDEEHTYVKNGK-YGFAKLKYRLHAEAARKDLNSKPVVNG-HPLKVEWNNVGGTTQHHGRGGAXXXXXXXSGLGSNSPYGTRILPAHGAHSVHVQFE-GEQVRAQSVVPGRSPGAAAVAAASATGGSAPSVRR--------RFYAFVHFPDTPEGSRGAAAAVEALNGTTFDELRVTCSF 855
            +FVGDL+R + +++L      HGTV  V IKRD+ T  NLGYGFV+  TH+EAV AK A+H   + GRK+R GWAQ+NT+LFVG LD  V     R  FA YG +  + TY K  K +G  K K R +AE A+ +LN K +     P++V W   G T+                                  H VHV+F+ G++V+    +         +    +  G   SV          + Y FVHF D+ +G   A  A+  L+GT    L + C++
Sbjct:  110 IFVGDLSRTVRDKDLRTVMEQHGTVVNVDIKRDKVTHNNLGYGFVQFETHEEAVKAKKALHGVVVSGRKIRTGWAQRNTTLFVGDLDSFVDESEYRAAFARYGSLVLDETYFKVDKGFGMVKYKTRENAETAKMELNGKKIGKSKRPVRVIW---GDTSVQK-------------------------------HCVHVKFDVGKEVK---TIQDSDISEDDLQKVFSEYGQVQSVNLPRHNDQSLKGYGFVHFEDSEKGEESAKKAIANLSGTKIGRLVIQCNY 356          
BLAST of mRNA_P-wetherbeei_contig13520.1.1 vs. uniprot
Match: A0A7S2RB19_9STRA (Hypothetical protein n=4 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RB19_9STRA)

HSP 1 Score: 135 bits (341), Expect = 2.630e-32
Identity = 75/174 (43.10%), Postives = 106/174 (60.92%), Query Frame = 1
Query:   10 EPIAPDESNLFVGDLARGLVEEELERAFAVHGTVAAVSIKRDRATGKNLGYGFVKMSTHDEAVSAKLAMHETELHGRKVRVGWAQKNTSLFVGGLDDIVTTEALRLMFAEYGPIDEEHTYVKNGK--------------YGFAKLKYRLHAEAARKDLNSKPVVNGH-PLKVEW 486
            +P   D++NLFVGDLAR + EEEL+ AF  HG V  V +KRDR T +NLGYGFV+M +H EA  AK +MH  E+ GR+VRVGWA KN++L V  LD  ++ E L   FA +GP+D + + V+  +                  K   R HAE+A+++L+   + +   PL+V+W
Sbjct:   46 QPTPGDDNNLFVGDLARDITEEELKDAFEPHGRVVEVLVKRDRLTHRNLGYGFVRMGSHAEACLAKESMHGREVAGRRVRVGWAMKNSTLVVKDLDPGLSEEDLLNAFARFGPLDLDQSGVRPAEPCSEEEEAGGSTALQAVFKFTQRTHAESAKQNLSGMMLASSSAPLRVDW 219          
BLAST of mRNA_P-wetherbeei_contig13520.1.1 vs. uniprot
Match: A0A836CDW8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDW8_9STRA)

HSP 1 Score: 134 bits (336), Expect = 6.770e-32
Identity = 66/128 (51.56%), Postives = 87/128 (67.97%), Query Frame = 1
Query:  109 VAAVSIKRDRATGKNLGYGFVKMSTHDEAVSAKLAMHETELHGRKVRVGWAQKNTSLFVGGLDDIVTTEALRLMFAEYGPIDEEHTYVKNGKYGFAKLKYR--LHAEAARKDLNSKPVVNGHPLKVEW 486
            V  V+IKRDR+T KNLGYGFV+M +H EA  AK  MH  E+HGR++RVGWAQKN +L V GL D VT E ++ +F  +G ++EE+T +     G A +KYR  LHAE AR+ LN    +   PL+V+W
Sbjct:   41 VLTVNIKRDRSTSKNLGYGFVRMGSHAEACVAKERMHRAEVHGRRIRVGWAQKNAALAVSGLPDGVTAEQVKALFRPFGALEEENTQLMTDGSGTAVVKYRNRLHAEDARRQLNGSQALGPAPLRVDW 168          
BLAST of mRNA_P-wetherbeei_contig13520.1.1 vs. uniprot
Match: A0A7R9U4X6_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U4X6_9STRA)

HSP 1 Score: 132 bits (331), Expect = 5.110e-31
Identity = 66/164 (40.24%), Postives = 102/164 (62.20%), Query Frame = 1
Query:   25 DESNLFVGDLARGLVEEELERAFAVHGTVAAVSIKRDRATGKNLGYGFVKMSTHDEAVSAKLAMHETELHGRKVRVGWAQKNTSLFVGGLDDIVTTEALRLMFAEYGPIDEEHTYVKNGKYGFA----------KLKYRLHAEAARKDLNSKPVVNGHPLKVEW 486
            D  +LFVGDL R   EE+L++AF+ +G +    +KRD+ +G+NLGYGF+K+ T D A  A   M+   + GR++R+ +AQKN  L V  L + VT + L  +F E+GP+D+EH  ++  + GFA          K  YR HAE+AR  +N++  ++G  L+V+W
Sbjct:   47 DRCHLFVGDLHRSTTEEDLQKAFSPYGKIVFAEVKRDKVSGRNLGYGFLKLDTEDGAQRALREMNGVPIKGRRIRINYAQKNCELHVTNLTEDVTKDELEAIFEEHGPLDKEHCVMRPAEPGFAGGKVGPSAIIKFLYRQHAESARDAVNNRVNLHGALLRVDW 210          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig13520.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FNP3_ECTSI1.040e-7147.85Poly(A) binding protein, cytoplasmic 4-like n=1 Ta... [more]
A0A6H5L4J2_9PHAE1.700e-7047.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
L8H825_ACACA3.150e-4434.77RNA recognition motif domain containing protein n=... [more]
A0A7S0TF52_9EUKA2.120e-3836.52Hypothetical protein (Fragment) n=1 Tax=Elphidium ... [more]
W7TSQ6_9STRA4.830e-3834.58Tia1 cytotoxic granule-associated rna binding prot... [more]
A0A7S0DL40_9EUKA8.080e-3834.28Hypothetical protein n=1 Tax=Amorphochlora amoebif... [more]
A0A7S3Z8S4_9EUKA3.960e-3634.51Hypothetical protein n=1 Tax=Lotharella globosa Ta... [more]
A0A7S2RB19_9STRA2.630e-3243.10Hypothetical protein n=4 Tax=Rhizochromulina marin... [more]
A0A836CDW8_9STRA6.770e-3251.56Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7R9U4X6_9STRA5.110e-3140.24Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig13520contigP-wetherbeei_contig13520:330..1830 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FNP3
PFAMsPALP,RRM_1
Model size855
Max annot lvl2759|Eukaryota
KEGG rclassRC00331,RC00418,RC02600
KEGG koko:K17989
KEGG ReactionR00220,R00590,R00996
KEGG Pathwayko00260,ko00270,ko00290,ko01100,ko01110,ko01130,ko01200,ko01230,map00260,map00270,map00290,map01100,map01110,map01130,map01200,map01230
KEGG ModuleM00570
Hectar predicted targeting categoryother localisation
Exons3
Evalue1.7e-72
EggNOG OGsKOG0145@1|root,KOG0145@2759|Eukaryota
Ec32 ortholog descriptionRNA recognition motif domain
Ec32 orthologEc-01_004780.1
EC4.3.1.17,4.3.1.19
DescriptionRNA binding
Cds size855
COG categoryDU
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185989.1022642-CDS-P-wetherbeei_contig13520:329..7081683185989.1022642-CDS-P-wetherbeei_contig13520:329..708Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13520 330..708 +
1683185989.1142006-CDS-P-wetherbeei_contig13520:957..12511683185989.1142006-CDS-P-wetherbeei_contig13520:957..1251Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13520 958..1251 +
1683185989.1231353-CDS-P-wetherbeei_contig13520:1648..18301683185989.1231353-CDS-P-wetherbeei_contig13520:1648..1830Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13520 1649..1830 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig13520.1.1prot_P-wetherbeei_contig13520.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig13520 330..1830 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig13520.1.1

>prot_P-wetherbeei_contig13520.1.1 ID=prot_P-wetherbeei_contig13520.1.1|Name=mRNA_P-wetherbeei_contig13520.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=285bp
LHDEPIAPDESNLFVGDLARGLVEEELERAFAVHGTVAAVSIKRDRATGK
NLGYGFVKMSTHDEAVSAKLAMHETELHGRKVRVGWAQKNTSLFVGGLDD
IVTTEALRLMFAEYGPIDEEHTYVKNGKYGFAKLKYRLHAEAARKDLNSK
PVVNGHPLKVEWNNVGGTTQHHGRGGAGAAAGGGSGLGSNSPYGTRILPA
HGAHSVHVQFEGEQVRAQSVVPGRSPGAAAVAAASATGGSAPSVRRRFYA
FVHFPDTPEGSRGAAAAVEALNGTTFDELRVTCSF
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mRNA from alignment at P-wetherbeei_contig13520:330..1830+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig13520.1.1 ID=mRNA_P-wetherbeei_contig13520.1.1|Name=mRNA_P-wetherbeei_contig13520.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1501bp|location=Sequence derived from alignment at P-wetherbeei_contig13520:330..1830+ (Phaeothamnion wetherbeei SAG_119_79)
CTGCACGACGAGCCGATTGCGCCCGACGAGAGCAATCTTTTCGTGGGCGA CCTGGCCCGCGGGCTCGTGGAAGAGGAGCTGGAGCGGGCCTTTGCCGTGC ACGGCACCGTCGCCGCTGTCAGCATCAAGCGGGACCGCGCCACCGGCAAG AACCTCGGCTACGGCTTCGTCAAGATGTCAACGCACGACGAGGCAGTCTC CGCCAAGCTTGCGATGCACGAGACGGAGCTGCACGGCCGGAAGGTGCGCG TCGGCTGGGCGCAAAAAAACACGAGTCTCTTTGTCGGTGGCCTCGACGAC ATTGTCACCACCGAGGCGCTGCGCCTCATGTTTGCCGAGTACGGACCCAT CGATGAGGAGCACACATACGTCAAGAACGGTCAGTCTCTTTCGAGGAAAA CCAATTTCTCATTTGCCAATGCAATGCCGCCTCTGCCGCCGCCAATGCGA ACATTGCGTTCTTAGATCCCCGCCGGCGCGACGACCCGACAGAGGTGGGC CGGCTGCTACCGTCGCCTTTTCTGGCGCGCCCGTCCTTTGCCGCCGGTTG TGTGCTTTCTAATGTGGCAGTTTGGAGATTCGATTTGCTGATGTTTTTGT TGGGGTCTCCTGTCGGAAAATTATTCAGGAAAGTACGGCTTCGCGAAATT GAAGTACCGCCTGCACGCAGAAGCGGCCCGCAAGGACCTCAACTCGAAGC CGGTTGTGAACGGTCACCCGCTTAAGGTGGAGTGGAACAACGTCGGCGGC ACGACGCAGCACCACGGTAGGGGCGGCGCCGGCGCAGCGGCCGGGGGCGG CAGCGGGCTCGGCAGCAACAGCCCGTACGGCACGCGCATCCTTCCGGCGC ACGGGGCACACAGTGTCCACGTGCAGTTTGAAGGGGAACAGGTACGTGCA CAGTCTGTCGTGCCTGGGCGGTGTTAGCTTTTGGTCTGTTGAATGGAAAC AGCGGCGTTCGGCAGTTTAGATCTTGGCCGCTGCGAACCATCGACTCTGT CGCAGCCGCGTGTCGCTGTTCTCTTCTTGCGGTCGTGTTGCTCTGGGATG TTTCAAAAATGCTTTCCGAACCCCCCCCCTTCCCCTCTGTCCCCTGATAA AATACCTCTATTCGCTGCTCCCGCTCGATGTTGCCTTGACGTGGCAGGAT CCCCGCGTGACGGAGGCCACCGTGCGCGCCCTTTTCCAGCGCTTCGGCAC GTCTTTGGAGGTAGTGATCCCTCGCAACCAGCCCGCCGCCCCCGTTGCTG CGTCCGCTGCGCCTCCGGGCGGCTCTCCCGCCGCCGCCGATGCCGACGCC GCCGCCGCTGGGTCGGCAGCGCCCGGAGCCGCCGCCGTCGCCGCCGCATC AGCGACAGGAGGTTCGGCACCGTCGGTGCGGCGGCGCTTCTACGCGTTTG TGCATTTCCCTGACACGCCGGAGGGCTCGCGGGGGGCGGCAGCGGCGGTG GAGGCGCTGAACGGTACGACGTTTGACGAGCTGCGCGTGACGTGTTCTTT C
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Coding sequence (CDS) from alignment at P-wetherbeei_contig13520:330..1830+

>mRNA_P-wetherbeei_contig13520.1.1 ID=mRNA_P-wetherbeei_contig13520.1.1|Name=mRNA_P-wetherbeei_contig13520.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=855bp|location=Sequence derived from alignment at P-wetherbeei_contig13520:330..1830+ (Phaeothamnion wetherbeei SAG_119_79)
CTGCACGACGAGCCGATTGCGCCCGACGAGAGCAATCTTTTCGTGGGCGA
CCTGGCCCGCGGGCTCGTGGAAGAGGAGCTGGAGCGGGCCTTTGCCGTGC
ACGGCACCGTCGCCGCTGTCAGCATCAAGCGGGACCGCGCCACCGGCAAG
AACCTCGGCTACGGCTTCGTCAAGATGTCAACGCACGACGAGGCAGTCTC
CGCCAAGCTTGCGATGCACGAGACGGAGCTGCACGGCCGGAAGGTGCGCG
TCGGCTGGGCGCAAAAAAACACGAGTCTCTTTGTCGGTGGCCTCGACGAC
ATTGTCACCACCGAGGCGCTGCGCCTCATGTTTGCCGAGTACGGACCCAT
CGATGAGGAGCACACATACGTCAAGAACGGAAAGTACGGCTTCGCGAAAT
TGAAGTACCGCCTGCACGCAGAAGCGGCCCGCAAGGACCTCAACTCGAAG
CCGGTTGTGAACGGTCACCCGCTTAAGGTGGAGTGGAACAACGTCGGCGG
CACGACGCAGCACCACGGTAGGGGCGGCGCCGGCGCAGCGGCCGGGGGCG
GCAGCGGGCTCGGCAGCAACAGCCCGTACGGCACGCGCATCCTTCCGGCG
CACGGGGCACACAGTGTCCACGTGCAGTTTGAAGGGGAACAGGTACGTGC
ACAGTCTGTCGTGCCTGGGCGGTCGCCCGGAGCCGCCGCCGTCGCCGCCG
CATCAGCGACAGGAGGTTCGGCACCGTCGGTGCGGCGGCGCTTCTACGCG
TTTGTGCATTTCCCTGACACGCCGGAGGGCTCGCGGGGGGCGGCAGCGGC
GGTGGAGGCGCTGAACGGTACGACGTTTGACGAGCTGCGCGTGACGTGTT
CTTTC
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