mRNA_P-wetherbeei_contig13515.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig13515.2.1
Unique NamemRNA_P-wetherbeei_contig13515.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig13515.2.1 vs. uniprot
Match: D8LE67_ECTSI (Protein MAK16 homolog n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LE67_ECTSI)

HSP 1 Score: 58.5 bits (140), Expect = 2.180e-6
Identity = 26/36 (72.22%), Postives = 29/36 (80.56%), Query Frame = 1 
Query:    1 KNIEGELLERLKKGTYGDIYNFPEKQYDTVKHGSRD 108
            ++IEGELLERLKKGTYGDIYNFPE QYD     + D
Sbjct:  160 RSIEGELLERLKKGTYGDIYNFPEVQYDKALMEAED 195
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BLAST of mRNA_P-wetherbeei_contig13515.2.1 vs. uniprot
Match: A0A8B7DSC3_HYDVU (Protein MAK16 homolog n=2 Tax=Hydra vulgaris TaxID=6087 RepID=A0A8B7DSC3_HYDVU)

HSP 1 Score: 56.2 bits (134), Expect = 1.040e-5
Identity = 25/30 (83.33%), Postives = 26/30 (86.67%), Query Frame = 1 
Query:    1 KNIEGELLERLKKGTYGDIYNFPEKQYDTV 90
            KNIE ELLERLKKGTYGDIYNFPE  +D V
Sbjct:  159 KNIEKELLERLKKGTYGDIYNFPETAFDKV 188
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BLAST of mRNA_P-wetherbeei_contig13515.2.1 vs. uniprot
Match: UPI001F5ECD6E (protein MAK16 homolog n=1 Tax=Hydra vulgaris TaxID=6087 RepID=UPI001F5ECD6E)

HSP 1 Score: 56.2 bits (134), Expect = 1.040e-5
Identity = 25/30 (83.33%), Postives = 26/30 (86.67%), Query Frame = 1 
Query:    1 KNIEGELLERLKKGTYGDIYNFPEKQYDTV 90
            KNIE ELLERLKKGTYGDIYNFPE  +D V
Sbjct:  159 KNIEKELLERLKKGTYGDIYNFPETAFDKV 188
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BLAST of mRNA_P-wetherbeei_contig13515.2.1 vs. uniprot
Match: A0A7M5V7Z2_9CNID (Protein MAK16 homolog n=1 Tax=Clytia hemisphaerica TaxID=252671 RepID=A0A7M5V7Z2_9CNID)

HSP 1 Score: 56.2 bits (134), Expect = 1.070e-5
Identity = 25/30 (83.33%), Postives = 26/30 (86.67%), Query Frame = 1 
Query:    1 KNIEGELLERLKKGTYGDIYNFPEKQYDTV 90
            KNIE ELLERLKKGTYGDIYNFPE  +D V
Sbjct:  159 KNIEKELLERLKKGTYGDIYNFPETAFDKV 188
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BLAST of mRNA_P-wetherbeei_contig13515.2.1 vs. uniprot
Match: A0A0E0Q6H6_ORYRU (Protein MAK16 homolog n=1 Tax=Oryza rufipogon TaxID=4529 RepID=A0A0E0Q6H6_ORYRU)

HSP 1 Score: 55.1 bits (131), Expect = 1.670e-5
Identity = 23/36 (63.89%), Postives = 28/36 (77.78%), Query Frame = 1 
Query:    1 KNIEGELLERLKKGTYGDIYNFPEKQYDTVKHGSRD 108
            KNIE EL ERLKKG YGDIYN+P K++DT+    +D
Sbjct:  142 KNIESELKERLKKGVYGDIYNYPFKEFDTILEMEKD 177
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BLAST of mRNA_P-wetherbeei_contig13515.2.1 vs. uniprot
Match: F0XYH3_AURAN (Ribosomal_L28e domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XYH3_AURAN)

HSP 1 Score: 54.7 bits (130), Expect = 2.430e-5
Identity = 23/37 (62.16%), Postives = 29/37 (78.38%), Query Frame = 1 
Query:    1 KNIEGELLERLKKGTYGDIYNFPEKQYDTVKHGSRDL 111
            K+IE ELL+RLK+GTYGDIYNFPE  Y+     ++DL
Sbjct:  158 KSIESELLQRLKQGTYGDIYNFPEMHYNAALDSAQDL 194
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BLAST of mRNA_P-wetherbeei_contig13515.2.1 vs. uniprot
Match: Q7XIT8_ORYSJ (Protein MAK16 homolog n=18 Tax=Oryzeae TaxID=147380 RepID=Q7XIT8_ORYSJ)

HSP 1 Score: 55.1 bits (131), Expect = 2.630e-5
Identity = 23/36 (63.89%), Postives = 28/36 (77.78%), Query Frame = 1 
Query:    1 KNIEGELLERLKKGTYGDIYNFPEKQYDTVKHGSRD 108
            KNIE EL ERLKKG YGDIYN+P K++DT+    +D
Sbjct:  158 KNIESELKERLKKGVYGDIYNYPFKEFDTILEMEKD 193
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BLAST of mRNA_P-wetherbeei_contig13515.2.1 vs. uniprot
Match: A0A7S3Y8F5_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y8F5_HETAK)

HSP 1 Score: 52.4 bits (124), Expect = 2.730e-5
Identity = 23/34 (67.65%), Postives = 26/34 (76.47%), Query Frame = 1 
Query:    7 IEGELLERLKKGTYGDIYNFPEKQYDTVKHGSRD 108
            IE ELL+RLK+GTYGDIYNFPE QYD      +D
Sbjct:   78 IEAELLQRLKQGTYGDIYNFPEVQYDKALGALQD 111
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BLAST of mRNA_P-wetherbeei_contig13515.2.1 vs. uniprot
Match: UPI000B47CE94 (protein MAK16 homolog B-like n=4 Tax=Hordeum vulgare subsp. vulgare TaxID=112509 RepID=UPI000B47CE94)

HSP 1 Score: 51.6 bits (122), Expect = 4.660e-5
Identity = 21/30 (70.00%), Postives = 26/30 (86.67%), Query Frame = 1 
Query:    1 KNIEGELLERLKKGTYGDIYNFPEKQYDTV 90
            K+IE EL ERL+KG YG+IYNFP KQ+DT+
Sbjct:   26 KSIESELKERLRKGVYGEIYNFPFKQFDTI 55
[Close]
BLAST of mRNA_P-wetherbeei_contig13515.2.1 vs. uniprot
Match: A0A7S2P6J1_9DINO (Hypothetical protein (Fragment) n=1 Tax=Brandtodinium nutricula TaxID=1333877 RepID=A0A7S2P6J1_9DINO)

HSP 1 Score: 51.6 bits (122), Expect = 5.180e-5
Identity = 21/28 (75.00%), Postives = 26/28 (92.86%), Query Frame = 1 
Query:    7 IEGELLERLKKGTYGDIYNFPEKQYDTV 90
            IE ELLERLK+GTYGDIYNFP+K++D+ 
Sbjct:   55 IEKELLERLKQGTYGDIYNFPKKEFDSA 82
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig13515.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
D8LE67_ECTSI2.180e-672.22Protein MAK16 homolog n=2 Tax=Ectocarpus TaxID=287... [more]
A0A8B7DSC3_HYDVU1.040e-583.33Protein MAK16 homolog n=2 Tax=Hydra vulgaris TaxID... [more]
UPI001F5ECD6E1.040e-583.33protein MAK16 homolog n=1 Tax=Hydra vulgaris TaxID... [more]
A0A7M5V7Z2_9CNID1.070e-583.33Protein MAK16 homolog n=1 Tax=Clytia hemisphaerica... [more]
A0A0E0Q6H6_ORYRU1.670e-563.89Protein MAK16 homolog n=1 Tax=Oryza rufipogon TaxI... [more]
F0XYH3_AURAN2.430e-562.16Ribosomal_L28e domain-containing protein (Fragment... [more]
Q7XIT8_ORYSJ2.630e-563.89Protein MAK16 homolog n=18 Tax=Oryzeae TaxID=14738... [more]
A0A7S3Y8F5_HETAK2.730e-567.65Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
UPI000B47CE944.660e-570.00protein MAK16 homolog B-like n=4 Tax=Hordeum vulga... [more]
A0A7S2P6J1_9DINO5.180e-575.00Hypothetical protein (Fragment) n=1 Tax=Brandtodin... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig13515contigP-wetherbeei_contig13515:219..959 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size743
Hectar predicted targeting categoryother localisation
Exons1
Cds size390
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185988.8664682-UTR-P-wetherbeei_contig13515:218..5691683185988.8664682-UTR-P-wetherbeei_contig13515:218..569Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig13515 219..569 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185988.8864455-CDS-P-wetherbeei_contig13515:569..9591683185988.8864455-CDS-P-wetherbeei_contig13515:569..959Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13515 570..959 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig13515.2.1prot_P-wetherbeei_contig13515.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig13515 570..959 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig13515.2.1

>prot_P-wetherbeei_contig13515.2.1 ID=prot_P-wetherbeei_contig13515.2.1|Name=mRNA_P-wetherbeei_contig13515.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=130bp
MTMRIASLAFSSPYLVLFPSSLNGVVFRRTRRRWRRRRESTSIRRRRRRL
RRPSTSRARRTAARWSTSRATLRRTPISRNGAAPATATAAGRAASAGRRD
GGARDTGEATMKMRMRMTEGAATAAKRTAA
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mRNA from alignment at P-wetherbeei_contig13515:219..959+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig13515.2.1 ID=mRNA_P-wetherbeei_contig13515.2.1|Name=mRNA_P-wetherbeei_contig13515.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=741bp|location=Sequence derived from alignment at P-wetherbeei_contig13515:219..959+ (Phaeothamnion wetherbeei SAG_119_79)
AAGAACATCGAGGGGGAGCTGCTGGAGCGGCTTAAGAAGGGCACCTACGG
CGACATCTACAACTTCCCCGAGAAGCAGTATGACACGGTGAAACATGGGA
GCAGAGATCTTAGAGCGTTGCCGCCCCTTTCCACATCTTTTGGATTGATC
CGGGTTTCTTTTCTTTTCTACTGCTGCAATCCATGACGACGTGCGTCAGT
AGGGGAAGACCAGCCGGCAAACATGAACGGCTCGAGGAGAATTATGGCAT
CTGACATCTGATCCTGCTCTGAAGCCTGGGTGGACCGGCCCGACCTGCGT
GCATTTTTATCTTTACCACTTCAAAACTTTGCTCCTTGCAGTGCATCATT
AATGACAATGCGTATAGCCTCGCTTGCGTTTTCTTCCCCATACCTCGTTC
TTTTTCCTTCCTCCTTGAACGGTGTGGTGTTTCGGCGCACGCGTAGGCGC
TGGCGCAGGCGGAGGGAGAGTACGTCGATCCGGAGGAGGAGGCGGAGGCT
GCGGAGGCCGAGTACGAGTCGGGCTCGGAGGACAGCGGCGAGGTGGAGTA
CGTCGAGGGCGACTTTGAGGAGGACACCGATCTCGAGGAATGGGGCGGCG
CCGGCGACGGCGACGGCGGCGGGGAGAGCGGCGTCGGCGGGCCGCCGGGA
CGGTGGGGCCAGGGATACTGGGGAGGCGACAATGAAAATGAGGATGAGGA
TGACGGAGGGAGCGGCCACGGCGGCGAAGAGAACGGCAGCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig13515:219..959+

>mRNA_P-wetherbeei_contig13515.2.1 ID=mRNA_P-wetherbeei_contig13515.2.1|Name=mRNA_P-wetherbeei_contig13515.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=390bp|location=Sequence derived from alignment at P-wetherbeei_contig13515:219..959+ (Phaeothamnion wetherbeei SAG_119_79)
ATGACAATGCGTATAGCCTCGCTTGCGTTTTCTTCCCCATACCTCGTTCT
TTTTCCTTCCTCCTTGAACGGTGTGGTGTTTCGGCGCACGCGTAGGCGCT
GGCGCAGGCGGAGGGAGAGTACGTCGATCCGGAGGAGGAGGCGGAGGCTG
CGGAGGCCGAGTACGAGTCGGGCTCGGAGGACAGCGGCGAGGTGGAGTAC
GTCGAGGGCGACTTTGAGGAGGACACCGATCTCGAGGAATGGGGCGGCGC
CGGCGACGGCGACGGCGGCGGGGAGAGCGGCGTCGGCGGGCCGCCGGGAC
GGTGGGGCCAGGGATACTGGGGAGGCGACAATGAAAATGAGGATGAGGAT
GACGGAGGGAGCGGCCACGGCGGCGAAGAGAACGGCAGCC
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