mRNA_P-wetherbeei_contig13512.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig13512.1.1
Unique NamemRNA_P-wetherbeei_contig13512.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig13512.1.1 vs. uniprot
Match: A0A836CK85_9STRA (Light harvesting complex protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CK85_9STRA)

HSP 1 Score: 217 bits (552), Expect = 8.840e-69
Identity = 114/175 (65.14%), Postives = 134/175 (76.57%), Query Frame = 1
Query:   10 EAAVLCALVAGASAFTGTPLVGVAKTA--ARGSSQVSMMA-KSASVPFMARPKALDGTVPGDAGFDPLGFSDWIDLKFLREAEIKHGRICMLAWLGYVATDLGVHLPGDMHALSSLEAHDAAVKFGAMPQILLFISAFEAVSTPAVVQMVNGSGREPGYFGFDPLGFAKTDAKMV 525
            +A  +  LV  A+AFT       A+ A  A   SQV+MMA KSAS+PFM +P+ LDGTVPGD GFDPLGFS+W++L FLREAEIKHGRICMLA  G+VA DLG+HLPGD+H + SLEAHD AVKFGAM QILL+ S FEA+ST  VVQM+NGSGR+PGYFGFDPL F+K  A   
Sbjct:    5 KALAVAGLVGSAAAFTAPSAFAGARVARSAVAPSQVTMMAGKSASIPFMPKPEKLDGTVPGDVGFDPLGFSNWVNLDFLREAEIKHGRICMLAVAGWVAVDLGLHLPGDVHNVGSLEAHDTAVKFGAMSQILLWTSIFEAISTVGVVQMLNGSGRQPGYFGFDPLNFSKDAASKA 179          
BLAST of mRNA_P-wetherbeei_contig13512.1.1 vs. uniprot
Match: D7FWB9_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWB9_ECTSI)

HSP 1 Score: 180 bits (457), Expect = 2.200e-54
Identity = 94/156 (60.26%), Postives = 114/156 (73.08%), Query Frame = 1
Query:   25 CALVAGASAFTGTPLVGVAKTAARGSSQVSMMAKSASVPFMARPKALDGTVPGDAGFDPLGFSDWIDLKFLREAEIKHGRICMLAWLGYVATDLGVHLPGDMHALSSLEAHDAAVKFGAMPQILLFISAFEAVSTPAVVQMVNGSGREPGYFGFDP 492
            C+L   ASA    P   + + A+  S       KS S+PFM +P  LDGT+ GDAGFDPLGFS++I L FLREAE+KHGRIC LA +G+ ATDLG  LPG  HA++S+ AHDAAV  GAMPQILL++SAFEA+ST AV+QM+ GSGR PG FGFDP
Sbjct:    7 CSLAVLASASAFVPPAQLPRVASSNSGMSMQATKSKSLPFMPQPAKLDGTMAGDAGFDPLGFSNFIPLDFLREAELKHGRICQLAVVGFAATDLGFRLPGAEHAVASIAAHDAAVATGAMPQILLWVSAFEAISTVAVIQMLEGSGRIPGDFGFDP 162          
BLAST of mRNA_P-wetherbeei_contig13512.1.1 vs. uniprot
Match: A0A6V1QB66_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1QB66_HETAK)

HSP 1 Score: 174 bits (441), Expect = 4.710e-52
Identity = 98/174 (56.32%), Postives = 121/174 (69.54%), Query Frame = 1
Query:   10 EAAVLCALVAGASAFTGTPLVG---VAKTAARGSSQVSMMA-KSASVPFMARPKALDGTVPGDAGFDPLGFSDWIDLKFLREAEIKHGRICMLAWLGYVATDLGVHLPGDMHALSSLEAHDAAVKFGAMPQILLFISAFEAVSTPAVVQMVNGSGREPGYFGFDPLGFAKTDAK 519
            + A   AL AGA AF   P+ G   VAKT        +MMA KSA++PFM +P  LD ++PG AGFDP+GFSDW+ + +LREAEIKHGRICMLA +GY+ATD+G+HLPGDMH   SL AHD A+K GAM Q+L+ I   E     A+ + + GSGR PG FGFDPLGF+KT  K
Sbjct:    3 KVAAFAALFAGADAFVA-PMDGPKNVAKT--------TMMAEKSAALPFMPKPANLDESLPGYAGFDPVGFSDWLSVDWLREAEIKHGRICMLAVVGYIATDMGLHLPGDMHNYDSLLAHDQAIKNGAMQQLLMGIGWAETFGFLAIGETMRGSGRAPGDFGFDPLGFSKTPEK 167          
BLAST of mRNA_P-wetherbeei_contig13512.1.1 vs. uniprot
Match: W7T6P5_9STRA (Light-harvesting protein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T6P5_9STRA)

HSP 1 Score: 174 bits (441), Expect = 3.400e-51
Identity = 91/147 (61.90%), Postives = 112/147 (76.19%), Query Frame = 1
Query:   85 TAARGSSQVSMMA-KSASVPFMARPKALDGTVPGDAGFDPLGFSDWIDLKFLREAEIKHGRICMLAWLGYVATDLGVHLPGDMHALSSLEAHDAAVKFGAMPQILLFISAFEAVSTPAVVQMVNGSGREPGYFGFDPLGFAKTDAKM 522
            T ARG+  VSMMA KS S+PF+ RP ALDGT PGD GFDP+GF+ W+ L +L+EAEIKH RI MLA LG++  D  VHLPGD+HA+SSL AHD AVK GA+ QIL++ S  EA+S  A+ QM+ GSGR+PG F FDPLGFAK +  +
Sbjct:   93 TRARGA--VSMMAEKSKSIPFLPRPPALDGTAPGDVGFDPVGFTSWLPLAYLQEAEIKHCRIAMLATLGWIVADF-VHLPGDVHAVSSLAAHDVAVKSGALAQILIWTSIAEAISVVAISQMLEGSGRQPGDFKFDPLGFAKDEQTL 236          
BLAST of mRNA_P-wetherbeei_contig13512.1.1 vs. uniprot
Match: A0A4D9CSZ5_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CSZ5_9STRA)

HSP 1 Score: 171 bits (434), Expect = 5.090e-51
Identity = 96/165 (58.18%), Postives = 120/165 (72.73%), Query Frame = 1
Query:   31 LVAGASAFTGTPLVGVAKTAARGSSQVSMMA-KSASVPFMARPKALDGTVPGDAGFDPLGFSDWIDLKFLREAEIKHGRICMLAWLGYVATDLGVHLPGDMHALSSLEAHDAAVKFGAMPQILLFISAFEAVSTPAVVQMVNGSGREPGYFGFDPLGFAKTDAKM 522
            L+  A+AF   PL+  A T  RG+  VSMMA KS S+PF+ RP ALDGT  GD GFDP+GF+ W+ L +L+EAEIKH RI MLA LG++  D  VHLPGD+HA+SSL AHD AVK GA+ QIL++ S  EA+S  A+ QM+ GSGR+PG F FDPLGFAK +  +
Sbjct:    9 LIGAAAAFV--PLM-PATTRTRGA--VSMMAEKSKSIPFLPRPPALDGTAAGDVGFDPVGFTSWLPLAYLQEAEIKHCRIAMLATLGWIVADF-VHLPGDVHAVSSLAAHDVAVKSGALAQILIWTSIAEAISVIAISQMLEGSGRQPGDFKFDPLGFAKDEQTL 167          
BLAST of mRNA_P-wetherbeei_contig13512.1.1 vs. uniprot
Match: A0A7S4ETT6_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4ETT6_CHRCT)

HSP 1 Score: 168 bits (425), Expect = 2.270e-49
Identity = 92/169 (54.44%), Postives = 119/169 (70.41%), Query Frame = 1
Query:   10 EAAVLCALVAGASAFTGTPLVGVAKTAARGSSQVSMMAKSASVPFMARPKALDGTVPGDAGFDPLGFSDWIDLKFLREAEIKHGRICMLAWLGYVATDLGVHLPGDMHALSSLEAHDAAVKFGAMPQILLFISAFEAVSTPAVVQMVNG-SGREPGYFGFDPLGFAKTD 513
            + A + +LV+G+ AFT      V +T A   +    M KS ++PF+  PKALDG++ GD GFDPL  SD +DLKF+REAE+KHGRICMLAWLGYV  DLG+  PG   ++SSL AHD AVK GAM  +L+ +S FEA+STPAV +M++G S R+PG F  DP G+AK D
Sbjct:   24 QQATMLSLVSGSLAFTAPLTPAVTQTRAHAPN----MLKSQALPFVEAPKALDGSMVGDVGFDPLNLSDGLDLKFMREAELKHGRICMLAWLGYVVVDLGITAPG-APSVSSLAAHDTAVKEGAMYLLLMLVSGFEAISTPAVYEMMSGQSDRKPGDFQLDPFGWAKGD 187          
BLAST of mRNA_P-wetherbeei_contig13512.1.1 vs. uniprot
Match: A0A0G4FMW2_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4FMW2_VITBC)

HSP 1 Score: 166 bits (419), Expect = 2.600e-48
Identity = 81/128 (63.28%), Postives = 100/128 (78.12%), Query Frame = 1
Query:  127 SASVPFMARPKALDGTVPGDAGFDPLGFSDWIDLKFLREAEIKHGRICMLAWLGYVATDLGVHLPGDMHALSSLEAHDAAVKFGAMPQILLFISAFEAVSTPAVVQMVNGSGREPGYFGFDPLGFAKT 510
            S S+PFM RP  LDGT+  D GFDP GFS+W+DL++ REAEIKHGR+CMLA +GY+  +    LPG++H +SSLEAH+ AV++GAM QILL+IS  E  ST AVVQM +GSGR+PG FGFDPLGF K 
Sbjct:   69 SKSIPFMPRPYRLDGTMAADDGFDPFGFSNWLDLRWAREAEIKHGRLCMLATVGYIFAEY-FKLPGEVHQVSSLEAHNKAVEYGAMSQILLWISFAEIFSTIAVVQMYDGSGRQPGEFGFDPLGFCKN 195          
BLAST of mRNA_P-wetherbeei_contig13512.1.1 vs. uniprot
Match: F0Y5A3_AURAN (Putative plastid light harvesting protein isoform 33 n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y5A3_AURAN)

HSP 1 Score: 162 bits (410), Expect = 2.180e-47
Identity = 91/170 (53.53%), Postives = 112/170 (65.88%), Query Frame = 1
Query:   19 VLCALVAGASAFTGTPLVGVAKTAARGSSQVSMMAKSASVPFMARPKALDGTVPGDAGFDPLGFSDWIDLKFLREAEIKHGRICMLAWLGYVATDLGVHLPGDMHALSSLEAHDAAVKFGAMPQILLFISAFEAVSTPAVVQMV-NGSGREPGYFGFDPLGFAKTDAKMV 525
            VL +L A ASA      V  AK+A   + Q      S ++PFM +P+ALDGT  GD GFDP GF+   D+K+LREAEIKHGRICMLAW G+VATDLG  LPGDMH +SS+ AHD A K+GAM Q+ L++S  E + +  V QM+  GS REPG +G DPL F  T  K  
Sbjct:    6 VLISLAASASALVAP--VPAAKSAVAMNYQA-----SEALPFMEKPEALDGTYAGDVGFDPFGFTSIFDVKWLREAEIKHGRICMLAWTGFVATDLGFTLPGDMHQVSSVLAHDVACKYGAMQQLFLWLSFTEVILSAGVAQMMWMGSPREPGDYGLDPLDFCSTPEKKA 168          
BLAST of mRNA_P-wetherbeei_contig13512.1.1 vs. uniprot
Match: A0A6J4B112_9STRA (Fucoxanthin chlorophyll a/c protein 6 n=1 Tax=Chaetoceros gracilis TaxID=184592 RepID=A0A6J4B112_9STRA)

HSP 1 Score: 159 bits (402), Expect = 4.220e-46
Identity = 94/175 (53.71%), Postives = 121/175 (69.14%), Query Frame = 1
Query:   16 AVLCALVAGASAFTGTPLVGVAKTAARGSSQVSMMAKSASVPFMARPKALDGTVPGDAGFDPLGFSDWIDLKFLREAEIKHGRICMLAWLGYVATDLGVH---LPGDMHALSSLEAHDAAVKFGAMPQILLFISAFEAVSTPAVVQMV-NGSGREPGYFGFDPLGF--AKTDAKM 522
            A+L +L+A A+AF  +   G    AAR S+ +    KS ++PF+  P+ L G V GDAGFDP  FSD+  + FLREAEIKHGRICMLAWLG+VA DLG     LP     L+++ AHDA V+ GAM QI L+ S FEA+ST +V+QM+   SGREPGYFGFDPLGF   K++A++
Sbjct:    4 ALLASLIASAAAFAPSSSTG----AARASTALDAGKKSQALPFLPYPENLAGYV-GDAGFDPFRFSDFAPMDFLREAEIKHGRICMLAWLGFVAVDLGARIYPLPEAYEGLTAVTAHDALVQQGAMSQIFLWCSVFEAISTVSVIQMLYEESGREPGYFGFDPLGFLNGKSEAEV 173          
BLAST of mRNA_P-wetherbeei_contig13512.1.1 vs. uniprot
Match: A0A7S3ZSN9_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZSN9_9STRA)

HSP 1 Score: 158 bits (400), Expect = 8.220e-46
Identity = 82/156 (52.56%), Postives = 114/156 (73.08%), Query Frame = 1
Query:   28 ALVAGASAFTGTPLVGVAKTAARGSSQVSMMAKSASVPFMARPKALDGTVPGDAGFDPLGFSDWIDLKFLREAEIKHGRICMLAWLGYVATDLGVHLPGDMHALSSLEAHDAAVKFGAMPQILLFISAFEAVSTPAVVQMVNGSGREPGYFGFDPL 495
            AL AGASA      V     A + S++VS + +S ++PF+ RP+ L G V GD GFDPLG SDW+ +++LRE+E+KHGR+CMLA +G+VATDLG  LPG+MH ++S+ AHD AV  GAM QI ++I+  E +   A+++M++GSGR+PG FGFDPL
Sbjct:   13 ALAAGASALMAP--VXXXXXATQLSAEVSSVERSPAMPFLPRPQKLKGMV-GDKGFDPLGLSDWVPVEWLRESELKHGRVCMLAVVGFVATDLGFRLPGEMHNVASINAHDMAVDMGAMTQIGIWIAVAECIGYLAILEMLDGSGRQPGDFGFDPL 165          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig13512.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CK85_9STRA8.840e-6965.14Light harvesting complex protein n=1 Tax=Tribonema... [more]
D7FWB9_ECTSI2.200e-5460.26Light harvesting complex protein n=1 Tax=Ectocarpu... [more]
A0A6V1QB66_HETAK4.710e-5256.32Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
W7T6P5_9STRA3.400e-5161.90Light-harvesting protein n=2 Tax=Nannochloropsis g... [more]
A0A4D9CSZ5_9STRA5.090e-5158.18Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A7S4ETT6_CHRCT2.270e-4954.44Hypothetical protein n=1 Tax=Chrysotila carterae T... [more]
A0A0G4FMW2_VITBC2.600e-4863.28Uncharacterized protein n=2 Tax=Vitrella brassicaf... [more]
F0Y5A3_AURAN2.180e-4753.53Putative plastid light harvesting protein isoform ... [more]
A0A6J4B112_9STRA4.220e-4653.71Fucoxanthin chlorophyll a/c protein 6 n=1 Tax=Chae... [more]
A0A7S3ZSN9_9STRA8.220e-4652.56Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig13512contigP-wetherbeei_contig13512:143..1812 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog44056.XP_009035866.1
Preferred nameLhcr4
PFAMsChloroa_b-bind
Model size540
Max annot lvl2759|Eukaryota
KEGG koko:K08907
KEGG Pathwayko00196,map00196
Hectar predicted targeting categorychloroplast
Exons5
Evalue3.57e-48
EggNOG OGs2BPHY@1|root,2S1S0@2759|Eukaryota
Ec32 ortholog descriptionLight harvesting complex protein
Ec32 orthologEc-25_003800.1
DescriptionChlorophyll A-B binding protein
Cds size540
COG categoryU
BRITEko00000,ko00001,ko00194
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185988.688038-CDS-P-wetherbeei_contig13512:142..2501683185988.688038-CDS-P-wetherbeei_contig13512:142..250Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13512 143..250 +
1683185988.6999118-CDS-P-wetherbeei_contig13512:642..7301683185988.6999118-CDS-P-wetherbeei_contig13512:642..730Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13512 643..730 +
1683185988.7108827-CDS-P-wetherbeei_contig13512:1027..10901683185988.7108827-CDS-P-wetherbeei_contig13512:1027..1090Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13512 1028..1090 +
1683185988.7183223-CDS-P-wetherbeei_contig13512:1307..13841683185988.7183223-CDS-P-wetherbeei_contig13512:1307..1384Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13512 1308..1384 +
1683185988.7274332-CDS-P-wetherbeei_contig13512:1608..18121683185988.7274332-CDS-P-wetherbeei_contig13512:1608..1812Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13512 1609..1812 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig13512.1.1prot_P-wetherbeei_contig13512.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig13512 143..1812 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig13512.1.1

>prot_P-wetherbeei_contig13512.1.1 ID=prot_P-wetherbeei_contig13512.1.1|Name=mRNA_P-wetherbeei_contig13512.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=180bp
MKCEAAVLCALVAGASAFTGTPLVGVAKTAARGSSQVSMMAKSASVPFMA
RPKALDGTVPGDAGFDPLGFSDWIDLKFLREAEIKHGRICMLAWLGYVAT
DLGVHLPGDMHALSSLEAHDAAVKFGAMPQILLFISAFEAVSTPAVVQMV
NGSGREPGYFGFDPLGFAKTDAKMVSGRR*
back to top

mRNA from alignment at P-wetherbeei_contig13512:143..1812+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig13512.1.1 ID=mRNA_P-wetherbeei_contig13512.1.1|Name=mRNA_P-wetherbeei_contig13512.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1670bp|location=Sequence derived from alignment at P-wetherbeei_contig13512:143..1812+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAAGTGCGAGGCTGCTGTTCTTTGTGCGTTGGTGGCTGGCGCCTCGGC CTTCACCGGCACCCCTCTCGTCGGCGTCGCCAAGACTGCCGCCCGGGGTT CGTCGCAGGTGAGGGACAGAAGAATGCTTCAAGAACACCCTTTCCACTCA GGGGTCGGGTCGCTCCCGCAGCACCGAAGACTATGTGTTGGAAAACGAAG GAAAGAACATGCGCACAACATTTGTCGAGGAACATGAGGCCGTGCGAAAA GAGCCGGCACATCTCCCGCCTTGTTACATGGGCGCGCGACGCCGTGACAA TGTCTTAAGAGCAGTGCGTTCAGGCACCTGGACGAAGGACTTACCGAAGT CTGATCTAGTCATTTCGACGTTCGATTGTTCCGTCGAGGTTTCGGTTTTT GCTCTCCCCATCCCATGTTCTTTATGAATCATGCTAAAACGACTACACTG ACCTGCGCCCATGTGTTTCTGCGTCCTTCTCTCTATGGACCAACTTGTAG GTGTCGATGATGGCGAAGTCGGCGAGCGTGCCGTTCATGGCACGGCCGAA GGCGCTCGACGGGACCGTCCCTGGCGACGCCGGCTTCGGTGAGAGGGAGC GCCGACATTCTTTCGCTGGAAATTAACCCCGCTGGGTGCCGGAGCCCGAT GGTTATGGAGGCTTCAGAGGGCAGCGAGGCATGATGACGTCTTGCGCGGG CGCTGGAGGCAAAACTGGGTCTTCTCGTCGGGAGGAGCGGGACGGAGAGC GACAATCTTTCCTTCGGCCGTCGGTTTCCGGCGGTGGCTTGTCCTTGTTG CTGTGAGCCGGGCAGTGGGCGCGTTAACCGTATCGCTGACCCGTCCGCCC TTTTCTCCTTCTTGCGGATAAACGGAAACCGGCAGACCCCCTCGGGTTCT CCGACTGGATCGACCTTAAATTCCTCCGCGAGGCTGAGATCAAGCACGGT GAGTATTCGGACTTCGCCCTGCCCTTGTCACGTTTCTTCTGTATGGCGAT ATTTCTCGTTATGTTCTTAGCTGTCCTCCTTTTTCTATCCAAACTGCCCT TTGAGATTGCATTTAGAACAGTGTTTGACGCATGGCTCTCGCGCTACGGT GCTTCACTTTTCTGCCTTCACTGTCGTCATGCTTTTCTGCTACCTTTGCT GTTTAACCGCCGCAGGGCGGATCTGCATGCTCGCCTGGTTGGGGTATGTC GCCACCGACCTGGGAGTGCACCTCCCCGGGGACATGCACGCGGTGAGAAG CAGGCGCCGAACCGTGCAAATCCGGTTGGCAGCTGGCTCTATCTCTCTCT TTGATCTTGAATGTTTTAACACGCAGGAAGCAGGCCGAGCATTTACCAGG GTGTTGCGTAACAGAAAGCGCTCCAGCGGCCATCCAGTGTGTTGTCGCGT CAAAGCAGTTGCACCACCATTCCATTCCTGTTACAACTACTTTGCCCGTT GTTTCCCCGCCCGCAGTTGTCGTCGCTGGAGGCGCACGACGCGGCCGTCA AGTTCGGCGCCATGCCGCAGATCCTCCTCTTCATTAGCGCGTTTGAGGCG GTGTCGACGCCTGCAGTGGTGCAGATGGTGAACGGCTCGGGCCGGGAGCC GGGCTACTTCGGTTTCGACCCCCTGGGGTTCGCCAAGACGGACGCCAAGA TGGTGAGCGGAAGGCGTTAG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig13512:143..1812+

>mRNA_P-wetherbeei_contig13512.1.1 ID=mRNA_P-wetherbeei_contig13512.1.1|Name=mRNA_P-wetherbeei_contig13512.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=540bp|location=Sequence derived from alignment at P-wetherbeei_contig13512:143..1812+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAAGTGCGAGGCTGCTGTTCTTTGTGCGTTGGTGGCTGGCGCCTCGGC
CTTCACCGGCACCCCTCTCGTCGGCGTCGCCAAGACTGCCGCCCGGGGTT
CGTCGCAGGTGTCGATGATGGCGAAGTCGGCGAGCGTGCCGTTCATGGCA
CGGCCGAAGGCGCTCGACGGGACCGTCCCTGGCGACGCCGGCTTCGACCC
CCTCGGGTTCTCCGACTGGATCGACCTTAAATTCCTCCGCGAGGCTGAGA
TCAAGCACGGGCGGATCTGCATGCTCGCCTGGTTGGGGTATGTCGCCACC
GACCTGGGAGTGCACCTCCCCGGGGACATGCACGCGTTGTCGTCGCTGGA
GGCGCACGACGCGGCCGTCAAGTTCGGCGCCATGCCGCAGATCCTCCTCT
TCATTAGCGCGTTTGAGGCGGTGTCGACGCCTGCAGTGGTGCAGATGGTG
AACGGCTCGGGCCGGGAGCCGGGCTACTTCGGTTTCGACCCCCTGGGGTT
CGCCAAGACGGACGCCAAGATGGTGAGCGGAAGGCGTTAG
back to top