mRNA_P-wetherbeei_contig1351.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1351.1.1
Unique NamemRNA_P-wetherbeei_contig1351.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig1351.1.1 vs. uniprot
Match: A0A067BML2_SAPPC (Uncharacterized protein n=5 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067BML2_SAPPC)

HSP 1 Score: 99.8 bits (247), Expect = 1.890e-23
Identity = 44/69 (63.77%), Postives = 51/69 (73.91%), Query Frame = 1
Query:    1 SCDANCGMLDSVTAVTLRDIPPEQELTIDYATVNSGFMQQPSDNFQCTCGAADCRGNVTSGDWRDPKVR 207
            SCD +CGM DSVT   +RDI P  E+TIDYA VN G M+Q SDNF C CG+A CRG +TS DWR P+VR
Sbjct:  263 SCDPSCGMKDSVTVHAIRDIYPGDEITIDYAMVNDGSMEQESDNFDCQCGSASCRGRITSTDWRLPEVR 331          
BLAST of mRNA_P-wetherbeei_contig1351.1.1 vs. uniprot
Match: A0A485KN49_9STRA (Aste57867_9537 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KN49_9STRA)

HSP 1 Score: 94.0 bits (232), Expect = 2.840e-21
Identity = 39/69 (56.52%), Postives = 52/69 (75.36%), Query Frame = 1
Query:    1 SCDANCGMLDSVTAVTLRDIPPEQELTIDYATVNSGFMQQPSDNFQCTCGAADCRGNVTSGDWRDPKVR 207
            SCD +CGMLDSVT V +RD+ P +E+TIDY  VN G   QPSDNF C CG+A+CR  +T+ DW+ P+++
Sbjct:  264 SCDPSCGMLDSVTVVAIRDLYPGEEITIDYCMVNDGSNDQPSDNFTCMCGSANCRTTITTLDWQIPELQ 332          
BLAST of mRNA_P-wetherbeei_contig1351.1.1 vs. uniprot
Match: A0A067D1W9_SAPPC (Lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067D1W9_SAPPC)

HSP 1 Score: 93.2 bits (230), Expect = 1.500e-20
Identity = 37/69 (53.62%), Postives = 50/69 (72.46%), Query Frame = 1
Query:    1 SCDANCGMLDSVTAVTLRDIPPEQELTIDYATVNSGFMQQPSDNFQCTCGAADCRGNVTSGDWRDPKVR 207
            SCD  CGM DSVT + +RD+ P  E+TIDY  VN G   +PSDNF C CG+A+CRG +T+ DW+ P+++
Sbjct:  264 SCDPTCGMQDSVTVIAIRDVHPGDEITIDYCMVNDGCNDEPSDNFMCNCGSANCRGEITTLDWQLPELQ 332          
BLAST of mRNA_P-wetherbeei_contig1351.1.1 vs. uniprot
Match: A0A0H5R216_9EUKA (Uncharacterized protein n=9 Tax=Spongospora subterranea TaxID=70186 RepID=A0A0H5R216_9EUKA)

HSP 1 Score: 91.7 bits (226), Expect = 2.350e-20
Identity = 40/64 (62.50%), Postives = 48/64 (75.00%), Query Frame = 1
Query:    1 SCDANCGMLDSVTAVTLRDIPPEQELTIDYATVNSGFMQQPSDNFQCTCGAADCRGNVTSGDWR 192
            SCD +CGMLDSVT V LRDI   +E+TIDYA VN G +Q PSDNF+C C +  CRG +TS DW+
Sbjct:  262 SCDPSCGMLDSVTVVALRDIELGEEITIDYAMVNDGLIQGPSDNFKCLCMSPWCRGEITSNDWK 325          
BLAST of mRNA_P-wetherbeei_contig1351.1.1 vs. uniprot
Match: T0QXD7_SAPDV (Uncharacterized protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0QXD7_SAPDV)

HSP 1 Score: 89.7 bits (221), Expect = 1.070e-19
Identity = 36/69 (52.17%), Postives = 49/69 (71.01%), Query Frame = 1
Query:    1 SCDANCGMLDSVTAVTLRDIPPEQELTIDYATVNSGFMQQPSDNFQCTCGAADCRGNVTSGDWRDPKVR 207
            SCD  CGM DSVT + +RD+ P  E+TIDY  VN G   +PSDNF C CG+A+CR  +T+ DW+ P+++
Sbjct:  264 SCDPTCGMQDSVTVIAIRDVYPGDEITIDYCMVNDGCNDEPSDNFMCNCGSANCRREITTLDWQLPELQ 332          
BLAST of mRNA_P-wetherbeei_contig1351.1.1 vs. uniprot
Match: A0A4D9DEF7_9STRA (SET domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DEF7_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 4.000e-19
Identity = 40/69 (57.97%), Postives = 47/69 (68.12%), Query Frame = 1
Query:    1 SCDANCGMLDSVTAVTLRDIPPEQELTIDYATVNSGFMQQPSDNFQCTCGAADCRGNVTSGDWRDPKVR 207
            SCDAN GM DS + + +R+I   +E+TIDYATVNSG      DNF C C A DCRG VTS DW  PKV+
Sbjct:  277 SCDANAGMADSTSVIAIRNIAAGEEITIDYATVNSGLNTSEGDNFTCRCQARDCRGLVTSRDWMLPKVQ 345          
BLAST of mRNA_P-wetherbeei_contig1351.1.1 vs. uniprot
Match: A0A485KMP2_9STRA (Aste57867_9369 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KMP2_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 5.900e-17
Identity = 37/73 (50.68%), Postives = 49/73 (67.12%), Query Frame = 1
Query:    1 SCDANCGMLDSVTAVTLRDIPPEQELTIDYATVNSGFM----QQPSDNFQCTCGAADCRGNVTSGDWRDPKVR 207
            SCD +CGM DSVT + +RDI P  E+TIDYA VN G +       SD F C CG+A+CRG +T  DW+ P+++
Sbjct:  275 SCDPSCGMKDSVTVMAIRDIAPGDEITIDYAMVNDGAIAAMTSTGSDAFDCECGSANCRGQITPTDWQLPELQ 347          
BLAST of mRNA_P-wetherbeei_contig1351.1.1 vs. uniprot
Match: A0A7Y5BUZ0_9CHLR (SET domain-containing protein-lysine N-methyltransferase n=1 Tax=Anaerolineales bacterium TaxID=2073117 RepID=A0A7Y5BUZ0_9CHLR)

HSP 1 Score: 74.7 bits (182), Expect = 4.880e-15
Identity = 32/68 (47.06%), Postives = 44/68 (64.71%), Query Frame = 1
Query:    1 SCDANCGMLDSVTAVTLRDIPPEQELTIDYATVNSGFMQQPSDNFQCTCGAADCRGNVTSGDWRDPKV 204
            SC+ N G++  +T V +RDI P +E+  DY T +S     P D F+C CGAA+CRG VT  DWR P++
Sbjct:   84 SCNPNAGLVGQLTLVAMRDIKPGEEIGFDYGTADS----TPYDEFECQCGAANCRGRVTGNDWRKPEL 147          
BLAST of mRNA_P-wetherbeei_contig1351.1.1 vs. uniprot
Match: W7U7W8_9STRA (Nuclear protein set n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U7W8_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 5.400e-15
Identity = 34/62 (54.84%), Postives = 41/62 (66.13%), Query Frame = 1
Query:   22 MLDSVTAVTLRDIPPEQELTIDYATVNSGFMQQPSDNFQCTCGAADCRGNVTSGDWRDPKVR 207
            M DS + + +R+I   +E+TIDYATVNSG      DNF C C A DCRG VTS DW  PKV+
Sbjct:    1 MADSTSVIAIRNIAAGEEITIDYATVNSGLNTSEGDNFTCRCQARDCRGLVTSRDWMLPKVQ 62          
BLAST of mRNA_P-wetherbeei_contig1351.1.1 vs. uniprot
Match: A0A521T4J5_9CHLR (SET domain-containing protein-lysine N-methyltransferase n=1 Tax=Anaerolineae bacterium TaxID=2052143 RepID=A0A521T4J5_9CHLR)

HSP 1 Score: 73.2 bits (178), Expect = 1.850e-14
Identity = 32/68 (47.06%), Postives = 45/68 (66.18%), Query Frame = 1
Query:    1 SCDANCGMLDSVTAVTLRDIPPEQELTIDYATVNSGFMQQPSDNFQCTCGAADCRGNVTSGDWRDPKV 204
            SCD N G+  +++ V +RDI   +E+  DYAT +S    QP D F+C CGAA+CR +VT  DWR P++
Sbjct:   86 SCDPNAGLSSAISVVAMRDIKAGEEVCFDYATCDS----QPYDEFECGCGAANCRKHVTGADWRKPEL 149          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1351.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A067BML2_SAPPC1.890e-2363.77Uncharacterized protein n=5 Tax=Saprolegniaceae Ta... [more]
A0A485KN49_9STRA2.840e-2156.52Aste57867_9537 protein n=1 Tax=Aphanomyces stellat... [more]
A0A067D1W9_SAPPC1.500e-2053.62Lipid IV(A) 3-deoxy-D-manno-octulosonic acid trans... [more]
A0A0H5R216_9EUKA2.350e-2062.50Uncharacterized protein n=9 Tax=Spongospora subter... [more]
T0QXD7_SAPDV1.070e-1952.17Uncharacterized protein n=1 Tax=Saprolegnia diclin... [more]
A0A4D9DEF7_9STRA4.000e-1957.97SET domain-containing protein n=1 Tax=Nannochlorop... [more]
A0A485KMP2_9STRA5.900e-1750.68Aste57867_9369 protein n=1 Tax=Aphanomyces stellat... [more]
A0A7Y5BUZ0_9CHLR4.880e-1547.06SET domain-containing protein-lysine N-methyltrans... [more]
W7U7W8_9STRA5.400e-1554.84Nuclear protein set n=1 Tax=Nannochloropsis gadita... [more]
A0A521T4J5_9CHLR1.850e-1447.06SET domain-containing protein-lysine N-methyltrans... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1351contigP-wetherbeei_contig1351:110..316 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog112098.XP_008614211.1
PFAMsSET
Model size207
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.75e-18
EggNOG OGs2E1RF@1|root,2S91I@2759|Eukaryota
DescriptionCysteine-rich motif following a subset of SET domains
Cds size186
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185988.6554358-UTR-P-wetherbeei_contig1351:109..1301683185988.6554358-UTR-P-wetherbeei_contig1351:109..130Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1351 110..130 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185988.6647995-CDS-P-wetherbeei_contig1351:130..3161683185988.6647995-CDS-P-wetherbeei_contig1351:130..316Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1351 131..316 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1351.1.1prot_P-wetherbeei_contig1351.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1351 131..316 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1351.1.1

>prot_P-wetherbeei_contig1351.1.1 ID=prot_P-wetherbeei_contig1351.1.1|Name=mRNA_P-wetherbeei_contig1351.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=62bp
MLDSVTAVTLRDIPPEQELTIDYATVNSGFMQQPSDNFQCTCGAADCRGN
VTSGDWRDPKVR
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mRNA from alignment at P-wetherbeei_contig1351:110..316+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1351.1.1 ID=mRNA_P-wetherbeei_contig1351.1.1|Name=mRNA_P-wetherbeei_contig1351.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=207bp|location=Sequence derived from alignment at P-wetherbeei_contig1351:110..316+ (Phaeothamnion wetherbeei SAG_119_79)
AGCTGCGACGCGAACTGCGGCATGCTGGACTCGGTCACGGCGGTGACGCT GCGGGACATCCCGCCGGAGCAGGAGCTTACCATCGACTATGCCACCGTCA ACTCGGGCTTCATGCAGCAGCCCTCCGACAACTTCCAGTGCACGTGCGGC GCCGCCGACTGCCGCGGGAACGTCACTTCGGGGGACTGGCGCGACCCCAA GGTTAGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1351:110..316+

>mRNA_P-wetherbeei_contig1351.1.1 ID=mRNA_P-wetherbeei_contig1351.1.1|Name=mRNA_P-wetherbeei_contig1351.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=186bp|location=Sequence derived from alignment at P-wetherbeei_contig1351:110..316+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCTGGACTCGGTCACGGCGGTGACGCTGCGGGACATCCCGCCGGAGCA
GGAGCTTACCATCGACTATGCCACCGTCAACTCGGGCTTCATGCAGCAGC
CCTCCGACAACTTCCAGTGCACGTGCGGCGCCGCCGACTGCCGCGGGAAC
GTCACTTCGGGGGACTGGCGCGACCCCAAGGTTAGA
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