mRNA_P-wetherbeei_contig13508.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig13508.2.1
Unique NamemRNA_P-wetherbeei_contig13508.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig13508.2.1 vs. uniprot
Match: A0A353LPQ1_9PROT (Chemotaxis protein CheW n=2 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A353LPQ1_9PROT)

HSP 1 Score: 115 bits (288), Expect = 6.480e-31
Identity = 57/78 (73.08%), Postives = 64/78 (82.05%), Query Frame = 1
Query:   31 GNTATSDYVTMIVGGQLFGIPVLEVHDVFVPSKLAHVPMAPPEVAGVLNLRGRIVTAIDLRQRLGFEPRDPAAQVMAV 264
            G     ++VTMIV  QLFG+PVL+VHDVF+P+KLAHVPMA PEVAGVLNLRGRIVTAIDLR RLG+ P D   QVMAV
Sbjct:   16 GKDGGQNFVTMIVADQLFGVPVLDVHDVFIPTKLAHVPMAAPEVAGVLNLRGRIVTAIDLRCRLGYPPLDDGVQVMAV 93          
BLAST of mRNA_P-wetherbeei_contig13508.2.1 vs. uniprot
Match: A0A285TGF7_9HYPH (CheW protein n=2 Tax=Stappia TaxID=152161 RepID=A0A285TGF7_9HYPH)

HSP 1 Score: 105 bits (262), Expect = 4.890e-27
Identity = 53/84 (63.10%), Postives = 63/84 (75.00%), Query Frame = 1
Query:   13 NEARMLGNTATSDYVTMIVGGQLFGIPVLEVHDVFVPSKLAHVPMAPPEVAGVLNLRGRIVTAIDLRQRLGFEPRDPAAQVMAV 264
            N+    G   T  YVT+I+GGQLFG+P+ +VHDVFVP  +  VP+A PEVAGVLNLRGRIVTAID+R+RL    RD  AQVMAV
Sbjct:    4 NDNLAAGIDDTIQYVTVIIGGQLFGLPISQVHDVFVPESVTRVPLAAPEVAGVLNLRGRIVTAIDMRKRLHLPARDANAQVMAV 87          
BLAST of mRNA_P-wetherbeei_contig13508.2.1 vs. uniprot
Match: A0A2D9RKA8_9PROT (Chemotaxis protein CheW n=1 Tax=Ponticaulis sp. TaxID=2020902 RepID=A0A2D9RKA8_9PROT)

HSP 1 Score: 104 bits (259), Expect = 1.180e-26
Identity = 46/75 (61.33%), Postives = 60/75 (80.00%), Query Frame = 1
Query:   40 ATSDYVTMIVGGQLFGIPVLEVHDVFVPSKLAHVPMAPPEVAGVLNLRGRIVTAIDLRQRLGFEPRDPAAQVMAV 264
            ++S+Y+T+ +GGQLFG  V  +HDVF P+ +  VP++PPEVAG+LNLRGRIVTAID R RLG  PRDP A +MA+
Sbjct:    2 SSSEYITLYIGGQLFGASVARIHDVFAPTSITPVPLSPPEVAGLLNLRGRIVTAIDTRARLGLPPRDPEADIMAI 76          
BLAST of mRNA_P-wetherbeei_contig13508.2.1 vs. uniprot
Match: UPI0015EF1F4F (chemotaxis protein CheW n=1 Tax=Chthonobacter albigriseus TaxID=1683161 RepID=UPI0015EF1F4F)

HSP 1 Score: 104 bits (259), Expect = 1.590e-26
Identity = 49/85 (57.65%), Postives = 68/85 (80.00%), Query Frame = 1
Query:   10 DNEARMLGNTATSDYVTMIVGGQLFGIPVLEVHDVFVPSKLAHVPMAPPEVAGVLNLRGRIVTAIDLRQRLGFEPRDPAAQVMAV 264
            DN+AR    + T+ YVT+++GGQLFG+P+ +VHDVFVP  +  VP++ PE+AGVLNLRGRIVTAI++R+RLG  PR+  + +MAV
Sbjct:   13 DNDAR----SDTTQYVTVVIGGQLFGLPIHKVHDVFVPESMTRVPLSAPEIAGVLNLRGRIVTAINMRRRLGVPPREGKSGIMAV 93          
BLAST of mRNA_P-wetherbeei_contig13508.2.1 vs. uniprot
Match: A0A838XS12_9HYPH (Chemotaxis protein CheW n=1 Tax=Stappia taiwanensis TaxID=992267 RepID=A0A838XS12_9HYPH)

HSP 1 Score: 103 bits (258), Expect = 1.970e-26
Identity = 51/84 (60.71%), Postives = 63/84 (75.00%), Query Frame = 1
Query:   13 NEARMLGNTATSDYVTMIVGGQLFGIPVLEVHDVFVPSKLAHVPMAPPEVAGVLNLRGRIVTAIDLRQRLGFEPRDPAAQVMAV 264
            N+    G   +  YVT+++GGQLFG+P+ +VHDVFVP  +  VP+A PEVAGVLNLRGRIVTAID+R+RL    RD  AQVMAV
Sbjct:    4 NDNLATGAEDSIQYVTVVIGGQLFGLPISQVHDVFVPDSVTRVPLAAPEVAGVLNLRGRIVTAIDMRKRLHLPDRDENAQVMAV 87          
BLAST of mRNA_P-wetherbeei_contig13508.2.1 vs. uniprot
Match: A0A4R6R947_9HYPH (Purine-binding chemotaxis protein CheW n=1 Tax=Oharaeibacter diazotrophicus TaxID=1920512 RepID=A0A4R6R947_9HYPH)

HSP 1 Score: 103 bits (258), Expect = 2.140e-26
Identity = 46/74 (62.16%), Postives = 62/74 (83.78%), Query Frame = 1
Query:   43 TSDYVTMIVGGQLFGIPVLEVHDVFVPSKLAHVPMAPPEVAGVLNLRGRIVTAIDLRQRLGFEPRDPAAQVMAV 264
            T+ YVT+++GGQLFG+P+ +VHDVFVP  +  VP++ PE+AGVLNLRGRIVTAID+R+RLG   R+ A+ +MAV
Sbjct:   18 TTQYVTVVIGGQLFGLPISKVHDVFVPESMTRVPLSAPEIAGVLNLRGRIVTAIDMRRRLGLSAREGASTIMAV 91          
BLAST of mRNA_P-wetherbeei_contig13508.2.1 vs. uniprot
Match: A0A2D7XZH8_9PROT (Chemotaxis protein CheW n=1 Tax=Ponticaulis sp. TaxID=2020902 RepID=A0A2D7XZH8_9PROT)

HSP 1 Score: 102 bits (253), Expect = 9.580e-26
Identity = 46/75 (61.33%), Postives = 59/75 (78.67%), Query Frame = 1
Query:   40 ATSDYVTMIVGGQLFGIPVLEVHDVFVPSKLAHVPMAPPEVAGVLNLRGRIVTAIDLRQRLGFEPRDPAAQVMAV 264
            ++ +Y+T+ +GGQLFG  V  +HDVF P+ +  VP+AP EVAG+LNLRGRIVTAID R RLG EPRDP A +MA+
Sbjct:    2 SSQEYITLWIGGQLFGASVARIHDVFAPTSITPVPLAPREVAGLLNLRGRIVTAIDARSRLGLEPRDPDASIMAI 76          
BLAST of mRNA_P-wetherbeei_contig13508.2.1 vs. uniprot
Match: A0A363TY35_9BRAD (Chemotaxis protein CheW n=1 Tax=Bradyrhizobiaceae bacterium TaxID=2072420 RepID=A0A363TY35_9BRAD)

HSP 1 Score: 101 bits (251), Expect = 2.080e-25
Identity = 47/77 (61.04%), Postives = 61/77 (79.22%), Query Frame = 1
Query:   34 NTATSDYVTMIVGGQLFGIPVLEVHDVFVPSKLAHVPMAPPEVAGVLNLRGRIVTAIDLRQRLGFEPRDPAAQVMAV 264
            N   ++YVT+++GGQLFG+P+  V DVF+P +L  VP+A PE+AGVLNLRGRIVTAID+R+RLG  PR+ A   MAV
Sbjct:    9 NEYLTEYVTVMIGGQLFGLPISRVQDVFMPDRLTRVPLAAPEIAGVLNLRGRIVTAIDMRRRLGLPPREDARPPMAV 85          
BLAST of mRNA_P-wetherbeei_contig13508.2.1 vs. uniprot
Match: UPI0009496254 (chemotaxis protein CheW n=2 Tax=Pleomorphomonadaceae TaxID=2843308 RepID=UPI0009496254)

HSP 1 Score: 100 bits (249), Expect = 5.170e-25
Identity = 48/87 (55.17%), Postives = 65/87 (74.71%), Query Frame = 1
Query:   13 NEARMLGNTATSD---YVTMIVGGQLFGIPVLEVHDVFVPSKLAHVPMAPPEVAGVLNLRGRIVTAIDLRQRLGFEPRDPAAQVMAV 264
            N      N A +D   YVT+++GGQLFG+P+ +VHDVFVP  +  VP++ PE+AGVLNLRGRIVTAI++R+RLG  PR+  + +MAV
Sbjct:    7 NATGTAANEALTDSIQYVTVLIGGQLFGLPIHKVHDVFVPESMTRVPLSAPEIAGVLNLRGRIVTAINMRRRLGLPPREGNSSIMAV 93          
BLAST of mRNA_P-wetherbeei_contig13508.2.1 vs. uniprot
Match: UPI00184CD500 (Chemotaxis protein CheW n=1 Tax=Rhodobacteraceae bacterium TaxID=1904441 RepID=UPI00184CD500)

HSP 1 Score: 100 bits (249), Expect = 5.730e-25
Identity = 49/83 (59.04%), Postives = 64/83 (77.11%), Query Frame = 1
Query:   16 EARMLGNTATSDYVTMIVGGQLFGIPVLEVHDVFVPSKLAHVPMAPPEVAGVLNLRGRIVTAIDLRQRLGFEPRDPAAQVMAV 264
            EA+  G+  T  +VT+++GGQLFG+P+ +VHDVFVP  +  VP++ PEVAGVLNLRGRIVTAID+R+RL   P +   QVMAV
Sbjct:    8 EAKTAGDGETIQFVTVVIGGQLFGLPISQVHDVFVPESVTRVPLSAPEVAGVLNLRGRIVTAIDMRRRLHLPPNEEK-QVMAV 89          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig13508.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A353LPQ1_9PROT6.480e-3173.08Chemotaxis protein CheW n=2 Tax=Alphaproteobacteri... [more]
A0A285TGF7_9HYPH4.890e-2763.10CheW protein n=2 Tax=Stappia TaxID=152161 RepID=A0... [more]
A0A2D9RKA8_9PROT1.180e-2661.33Chemotaxis protein CheW n=1 Tax=Ponticaulis sp. Ta... [more]
UPI0015EF1F4F1.590e-2657.65chemotaxis protein CheW n=1 Tax=Chthonobacter albi... [more]
A0A838XS12_9HYPH1.970e-2660.71Chemotaxis protein CheW n=1 Tax=Stappia taiwanensi... [more]
A0A4R6R947_9HYPH2.140e-2662.16Purine-binding chemotaxis protein CheW n=1 Tax=Oha... [more]
A0A2D7XZH8_9PROT9.580e-2661.33Chemotaxis protein CheW n=1 Tax=Ponticaulis sp. Ta... [more]
A0A363TY35_9BRAD2.080e-2561.04Chemotaxis protein CheW n=1 Tax=Bradyrhizobiaceae ... [more]
UPI00094962545.170e-2555.17chemotaxis protein CheW n=2 Tax=Pleomorphomonadace... [more]
UPI00184CD5005.730e-2559.04Chemotaxis protein CheW n=1 Tax=Rhodobacteraceae b... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig13508contigP-wetherbeei_contig13508:1569..1832 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog911045.PSE_4652
Preferred namecheW
PFAMsCheW
Model size264
Max annot lvl28211|Alphaproteobacteria
KEGG koko:K03408
KEGG Pathwayko02020,ko02030,map02020,map02030
Hectar predicted targeting categoryother localisation
Exons1
Evalue4.95e-25
EggNOG OGsCOG0835@1|root,COG0835@2|Bacteria,1RAH1@1224|Proteobacteria,2U59Y@28211|Alphaproteobacteria
Descriptionchemotaxis protein
Cds size264
COG categoryNT
BRITEko00000,ko00001,ko02035
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185988.5988123-CDS-P-wetherbeei_contig13508:1568..18321683185988.5988123-CDS-P-wetherbeei_contig13508:1568..1832Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13508 1569..1832 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig13508.2.1prot_P-wetherbeei_contig13508.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig13508 1569..1832 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig13508.2.1

>prot_P-wetherbeei_contig13508.2.1 ID=prot_P-wetherbeei_contig13508.2.1|Name=mRNA_P-wetherbeei_contig13508.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=88bp
MQTDNEARMLGNTATSDYVTMIVGGQLFGIPVLEVHDVFVPSKLAHVPMA
PPEVAGVLNLRGRIVTAIDLRQRLGFEPRDPAAQVMAV
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mRNA from alignment at P-wetherbeei_contig13508:1569..1832+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig13508.2.1 ID=mRNA_P-wetherbeei_contig13508.2.1|Name=mRNA_P-wetherbeei_contig13508.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=264bp|location=Sequence derived from alignment at P-wetherbeei_contig13508:1569..1832+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCAGACCGATAACGAAGCGCGCATGCTGGGTAATACTGCGACTTCAGA TTATGTAACGATGATTGTGGGTGGCCAGTTATTTGGTATCCCGGTGCTGG AAGTGCATGATGTTTTCGTTCCAAGCAAGTTGGCCCATGTGCCAATGGCG CCGCCAGAAGTAGCGGGCGTATTAAATTTACGCGGTCGTATTGTTACAGC AATTGACCTGCGCCAAAGACTGGGGTTTGAACCACGCGATCCTGCCGCCC AGGTTATGGCCGTC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig13508:1569..1832+

>mRNA_P-wetherbeei_contig13508.2.1 ID=mRNA_P-wetherbeei_contig13508.2.1|Name=mRNA_P-wetherbeei_contig13508.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=264bp|location=Sequence derived from alignment at P-wetherbeei_contig13508:1569..1832+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCAGACCGATAACGAAGCGCGCATGCTGGGTAATACTGCGACTTCAGA
TTATGTAACGATGATTGTGGGTGGCCAGTTATTTGGTATCCCGGTGCTGG
AAGTGCATGATGTTTTCGTTCCAAGCAAGTTGGCCCATGTGCCAATGGCG
CCGCCAGAAGTAGCGGGCGTATTAAATTTACGCGGTCGTATTGTTACAGC
AATTGACCTGCGCCAAAGACTGGGGTTTGAACCACGCGATCCTGCCGCCC
AGGTTATGGCCGTC
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