mRNA_P-wetherbeei_contig13501.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig13501.1.1
Unique NamemRNA_P-wetherbeei_contig13501.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig13501.1.1 vs. uniprot
Match: A0A1Q6ZS94_9BACT (DNA-directed RNA polymerase subunit omega n=2 Tax=Bacteria TaxID=2 RepID=A0A1Q6ZS94_9BACT)

HSP 1 Score: 124 bits (310), Expect = 1.360e-35
Identity = 62/70 (88.57%), Postives = 64/70 (91.43%), Query Frame = 1 
Query:    1 MARITVDDCLKRIPNRFQLTLAATYRARQVSTGASALVEPNKDKPTVIALREIATGKVGLEVLKKNPASP 210
            MARITVDDCLKRIPNRFQLTLAATYRARQ+  GAS LVEPN+DK TVIALREIATGKVG EVLKKNPA P
Sbjct:    1 MARITVDDCLKRIPNRFQLTLAATYRARQLGAGASPLVEPNRDKSTVIALREIATGKVGTEVLKKNPAPP 70
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BLAST of mRNA_P-wetherbeei_contig13501.1.1 vs. uniprot
Match: A0A537BUW0_9PROT (DNA-directed RNA polymerase subunit omega n=2 Tax=unclassified Betaproteobacteria TaxID=33809 RepID=A0A537BUW0_9PROT)

HSP 1 Score: 122 bits (306), Expect = 5.550e-35
Identity = 61/70 (87.14%), Postives = 63/70 (90.00%), Query Frame = 1 
Query:    1 MARITVDDCLKRIPNRFQLTLAATYRARQVSTGASALVEPNKDKPTVIALREIATGKVGLEVLKKNPASP 210
            MARITVDDCLKRIPNRFQLTLAATYRARQ+  GAS LVEPN+DK TVIALREIATGKVG EVLKKNP  P
Sbjct:    1 MARITVDDCLKRIPNRFQLTLAATYRARQLGAGASPLVEPNRDKSTVIALREIATGKVGTEVLKKNPTPP 70
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BLAST of mRNA_P-wetherbeei_contig13501.1.1 vs. uniprot
Match: A0A1F4EYR1_9PROT (DNA-directed RNA polymerase subunit omega n=2 Tax=unclassified Betaproteobacteria TaxID=33809 RepID=A0A1F4EYR1_9PROT)

HSP 1 Score: 119 bits (298), Expect = 9.490e-34
Identity = 60/72 (83.33%), Postives = 63/72 (87.50%), Query Frame = 1 
Query:    1 MARITVDDCLKRIPNRFQLTLAATYRARQVSTGASALVEPNKDKPTVIALREIATGKVGLEVLKKNPASPMP 216
            MARITVDDCLKRIPNRF LTLAATYRARQ+S GAS LVEPN+DK TVIALREIATGKVG EVLK+N   P P
Sbjct:    1 MARITVDDCLKRIPNRFHLTLAATYRARQLSAGASPLVEPNRDKHTVIALREIATGKVGTEVLKRNATPPSP 72
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BLAST of mRNA_P-wetherbeei_contig13501.1.1 vs. uniprot
Match: UPI0019C1ED3B (DNA-directed RNA polymerase subunit omega n=1 Tax=Candidatus Parcubacteria bacterium TaxID=2762014 RepID=UPI0019C1ED3B)

HSP 1 Score: 118 bits (296), Expect = 2.700e-33
Identity = 61/83 (73.49%), Postives = 69/83 (83.13%), Query Frame = 1 
Query:    1 MARITVDDCLKRIPNRFQLTLAATYRARQVSTGASALVEPNKDKPTVIALREIATGKVGLEVLKKN-------PASPMPVATP 228
            MARITVDDCLKRIPNRFQLTL ATYRARQ+S+GAS LVEPN+DK TVIALREIA GK+G+EVL++N       P +P PVA P
Sbjct:    1 MARITVDDCLKRIPNRFQLTLTATYRARQLSSGASPLVEPNRDKFTVIALREIAVGKIGVEVLRRNQLAAISAPVAPAPVAPP 83
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BLAST of mRNA_P-wetherbeei_contig13501.1.1 vs. uniprot
Match: A0A521Z1H2_9PROT (DNA-directed RNA polymerase subunit omega n=2 Tax=unclassified Betaproteobacteria TaxID=33809 RepID=A0A521Z1H2_9PROT)

HSP 1 Score: 115 bits (289), Expect = 2.240e-32
Identity = 58/70 (82.86%), Postives = 60/70 (85.71%), Query Frame = 1 
Query:    1 MARITVDDCLKRIPNRFQLTLAATYRARQVSTGASALVEPNKDKPTVIALREIATGKVGLEVLKKNPASP 210
            MARITVDDCLKRIPNRF LTLAATYRARQ+  GAS  VEPN+DK TVIALREIA GKVG EVLKKNP  P
Sbjct:    1 MARITVDDCLKRIPNRFHLTLAATYRARQLGAGASPTVEPNRDKYTVIALREIAAGKVGTEVLKKNPTPP 70
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BLAST of mRNA_P-wetherbeei_contig13501.1.1 vs. uniprot
Match: UPI001BC264E6 (DNA-directed RNA polymerase subunit omega n=1 Tax=Sulfuricella sp. TaxID=2099377 RepID=UPI001BC264E6)

HSP 1 Score: 112 bits (279), Expect = 6.190e-31
Identity = 54/68 (79.41%), Postives = 62/68 (91.18%), Query Frame = 1 
Query:    1 MARITVDDCLKRIPNRFQLTLAATYRARQVSTGASALVEPNKDKPTVIALREIATGKVGLEVLKKNPA 204
            MARITVDDCLK IPNRF+L LAATYRARQ++TGA+ALVEPN+DKPTVIALREIA GKVG+E+L +  A
Sbjct:    1 MARITVDDCLKLIPNRFELALAATYRARQLATGATALVEPNRDKPTVIALREIAQGKVGMEILNRGRA 68
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BLAST of mRNA_P-wetherbeei_contig13501.1.1 vs. uniprot
Match: A0A1F4F0R5_9PROT (DNA-directed RNA polymerase subunit omega n=4 Tax=unclassified Betaproteobacteria TaxID=33809 RepID=A0A1F4F0R5_9PROT)

HSP 1 Score: 112 bits (279), Expect = 7.300e-31
Identity = 56/66 (84.85%), Postives = 60/66 (90.91%), Query Frame = 1 
Query:    1 MARITVDDCLKRIPNRFQLTLAATYRARQVSTGASALVEPNKDKPTVIALREIATGKVGLEVLKKN 198
            MARITVDDCLK  PNRFQLTLAATYRARQ+S GAS LVEPNKDK TVIALREIA+GK+G EVLK+N
Sbjct:    1 MARITVDDCLKIFPNRFQLTLAATYRARQLSAGASPLVEPNKDKFTVIALREIASGKIGAEVLKRN 66
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BLAST of mRNA_P-wetherbeei_contig13501.1.1 vs. uniprot
Match: A0A5C7JCQ0_9RHOO (DNA-directed RNA polymerase subunit omega n=1 Tax=Rhodocyclaceae bacterium TaxID=1898103 RepID=A0A5C7JCQ0_9RHOO)

HSP 1 Score: 110 bits (275), Expect = 2.520e-30
Identity = 54/68 (79.41%), Postives = 61/68 (89.71%), Query Frame = 1 
Query:    1 MARITVDDCLKRIPNRFQLTLAATYRARQVSTGASALVEPNKDKPTVIALREIATGKVGLEVLKKNPA 204
            MAR+TVDDCLKRIPNRFQLTLAATYRARQ+S G++A VE +KDKPTV+ALREIA GKVGLEVL +  A
Sbjct:    1 MARVTVDDCLKRIPNRFQLTLAATYRARQLSAGSNAQVESDKDKPTVVALREIAAGKVGLEVLNRGGA 68
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BLAST of mRNA_P-wetherbeei_contig13501.1.1 vs. uniprot
Match: A0A5C7K7Z4_9RHOO (DNA-directed RNA polymerase subunit omega n=2 Tax=Rhodocyclaceae TaxID=75787 RepID=A0A5C7K7Z4_9RHOO)

HSP 1 Score: 109 bits (273), Expect = 5.090e-30
Identity = 53/68 (77.94%), Postives = 61/68 (89.71%), Query Frame = 1 
Query:    1 MARITVDDCLKRIPNRFQLTLAATYRARQVSTGASALVEPNKDKPTVIALREIATGKVGLEVLKKNPA 204
            MAR+TVDDCLKRIPNRFQ+TLAATYRARQ+++GA+ LVE  KDKPTVIALREI +GKVGLEVL +  A
Sbjct:    1 MARVTVDDCLKRIPNRFQMTLAATYRARQLASGATPLVETEKDKPTVIALREIGSGKVGLEVLNRGQA 68
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BLAST of mRNA_P-wetherbeei_contig13501.1.1 vs. uniprot
Match: A0A011NTH9_9PROT (DNA-directed RNA polymerase subunit omega n=7 Tax=Candidatus Accumulibacter TaxID=327159 RepID=A0A011NTH9_9PROT)

HSP 1 Score: 108 bits (269), Expect = 2.080e-29
Identity = 51/68 (75.00%), Postives = 60/68 (88.24%), Query Frame = 1 
Query:    1 MARITVDDCLKRIPNRFQLTLAATYRARQVSTGASALVEPNKDKPTVIALREIATGKVGLEVLKKNPA 204
            MAR+TVDDCL RIPNRFQ+TLAATYRARQ++ GAS L++ N+DKPTV+ALREIA GKVGLEVL +  A
Sbjct:    1 MARVTVDDCLTRIPNRFQMTLAATYRARQITAGASPLIDANRDKPTVMALREIALGKVGLEVLNRGQA 68
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig13501.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1Q6ZS94_9BACT1.360e-3588.57DNA-directed RNA polymerase subunit omega n=2 Tax=... [more]
A0A537BUW0_9PROT5.550e-3587.14DNA-directed RNA polymerase subunit omega n=2 Tax=... [more]
A0A1F4EYR1_9PROT9.490e-3483.33DNA-directed RNA polymerase subunit omega n=2 Tax=... [more]
UPI0019C1ED3B2.700e-3373.49DNA-directed RNA polymerase subunit omega n=1 Tax=... [more]
A0A521Z1H2_9PROT2.240e-3282.86DNA-directed RNA polymerase subunit omega n=2 Tax=... [more]
UPI001BC264E66.190e-3179.41DNA-directed RNA polymerase subunit omega n=1 Tax=... [more]
A0A1F4F0R5_9PROT7.300e-3184.85DNA-directed RNA polymerase subunit omega n=4 Tax=... [more]
A0A5C7JCQ0_9RHOO2.520e-3079.41DNA-directed RNA polymerase subunit omega n=1 Tax=... [more]
A0A5C7K7Z4_9RHOO5.090e-3077.94DNA-directed RNA polymerase subunit omega n=2 Tax=... [more]
A0A011NTH9_9PROT2.080e-2975.00DNA-directed RNA polymerase subunit omega n=7 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig13501contigP-wetherbeei_contig13501:631..861 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1123487.KB892868_gene1248
Preferred namerpoZ
PFAMsRNA_pol_Rpb6
Model size231
Max annot lvl206389|Rhodocyclales
KEGG rclassRC02795
KEGG koko:K03060
KEGG ReactionR00435,R00441,R00442,R00443
KEGG Pathwayko00230,ko00240,ko01100,ko03020,map00230,map00240,map01100,map03020
KEGG ModuleM00183
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.97e-29
EggNOG OGsCOG1758@1|root,COG1758@2|Bacteria,1N6TX@1224|Proteobacteria,2VVUH@28216|Betaproteobacteria,2KX71@206389|Rhodocyclales
EC2.7.7.6
DescriptionPromotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits
Cds size231
COG categoryK
BRITEbr01611,ko00000,ko00001,ko00002,ko01000,ko03021,ko03400
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185988.210147-CDS-P-wetherbeei_contig13501:630..8611683185988.210147-CDS-P-wetherbeei_contig13501:630..861Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13501 631..861 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig13501.1.1prot_P-wetherbeei_contig13501.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig13501 631..861 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig13501.1.1

>prot_P-wetherbeei_contig13501.1.1 ID=prot_P-wetherbeei_contig13501.1.1|Name=mRNA_P-wetherbeei_contig13501.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=77bp
MARITVDDCLKRIPNRFQLTLAATYRARQVSTGASALVEPNKDKPTVIAL
REIATGKVGLEVLKKNPASPMPVATP*
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mRNA from alignment at P-wetherbeei_contig13501:631..861-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig13501.1.1 ID=mRNA_P-wetherbeei_contig13501.1.1|Name=mRNA_P-wetherbeei_contig13501.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=231bp|location=Sequence derived from alignment at P-wetherbeei_contig13501:631..861- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCACGCATCACCGTCGACGATTGTCTCAAACGCATCCCCAACCGTTT
CCAGCTGACGCTCGCCGCGACCTATCGCGCCCGGCAGGTCAGCACCGGTG
CCTCGGCCCTGGTCGAACCCAACAAGGACAAGCCCACCGTGATCGCGCTG
CGCGAGATCGCCACCGGCAAGGTCGGGCTGGAAGTGCTGAAGAAGAACCC
CGCATCTCCGATGCCGGTCGCCACGCCCTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig13501:631..861-

>mRNA_P-wetherbeei_contig13501.1.1 ID=mRNA_P-wetherbeei_contig13501.1.1|Name=mRNA_P-wetherbeei_contig13501.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=231bp|location=Sequence derived from alignment at P-wetherbeei_contig13501:631..861- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCACGCATCACCGTCGACGATTGTCTCAAACGCATCCCCAACCGTTT
CCAGCTGACGCTCGCCGCGACCTATCGCGCCCGGCAGGTCAGCACCGGTG
CCTCGGCCCTGGTCGAACCCAACAAGGACAAGCCCACCGTGATCGCGCTG
CGCGAGATCGCCACCGGCAAGGTCGGGCTGGAAGTGCTGAAGAAGAACCC
CGCATCTCCGATGCCGGTCGCCACGCCCTGA
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