mRNA_P-wetherbeei_contig135.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
|
Overview
Homology
BLAST of mRNA_P-wetherbeei_contig135.3.1 vs. uniprot
Match: UPI001C3E6F7B (OB-fold domain-containing protein n=1 Tax=Miltoncostaea oceani TaxID=2843216 RepID=UPI001C3E6F7B) HSP 1 Score: 182 bits (463), Expect = 1.380e-57 Identity = 86/100 (86.00%), Postives = 91/100 (91.00%), Query Frame = 1
Query: 1 HCYACGGSDMVEQELAGTGELTNYTVVYYPPRDFLGQEPYVVGHITMDEGVLMPAPVVGVAPEDIQVGTRVKATLRRMKLGHEGDIYYSQKFVVDTAPAA 300
HCY CG +VE+EL+G GEL+NYTVVYYPPRDFLGQEPYVVGHITMDEGV MPAPVVGVAPED+ VGTRVKATLRRMKLGHEGDIYYSQKFVVDT AA
Sbjct: 36 HCYYCGSDTLVEEELSGKGELSNYTVVYYPPRDFLGQEPYVVGHITMDEGVAMPAPVVGVAPEDVTVGTRVKATLRRMKLGHEGDIYYSQKFVVDTDAAA 135
BLAST of mRNA_P-wetherbeei_contig135.3.1 vs. uniprot
Match: A0A7J3C9Q5_9EURY (Zn-ribbon domain-containing OB-fold protein n=1 Tax=Euryarchaeota archaeon TaxID=2026739 RepID=A0A7J3C9Q5_9EURY) HSP 1 Score: 75.5 bits (184), Expect = 2.470e-15 Identity = 40/88 (45.45%), Postives = 58/88 (65.91%), Query Frame = 1
Query: 25 DMVEQELAGTGELTNYTVVYYPPRDFLGQEPYVVGHITMDEGVLMPAPVVGVAPEDIQVGTRVKATLRRMKL-GHEGDIYYSQKFVVD 285
+MVE+EL+G GE+ +YTVV+ F Q PYV+ I M EG L+ +V P +IQ+GT+V+A LR+++ G EG I Y KFV++
Sbjct: 46 NMVEEELSGKGEVYSYTVVHDGLEQFKMQVPYVMAMIRMKEGPLVTGQIVDAEPSEIQIGTKVRAALRKVRTEGKEGIIQYGYKFVLE 133
BLAST of mRNA_P-wetherbeei_contig135.3.1 vs. uniprot
Match: A0A2J4GAN1_9CREN (Transcriptional regulator n=1 Tax=Thermofilum sp. NZ13 TaxID=1980981 RepID=A0A2J4GAN1_9CREN) HSP 1 Score: 74.7 bits (182), Expect = 5.070e-15 Identity = 35/92 (38.04%), Postives = 56/92 (60.87%), Query Frame = 1
Query: 4 CYACGGSDMVEQELAGTGELTNYTVVYYPPRDFLGQEPYVVGHITMDEGVLMPAPVVGVAPEDIQVGTRVKATLRRMK-LGHEGDIYYSQKF 276
C CG ++ ++L TG + +++V PP +F+GQ PYVV + +D+G L+PA + V P+++ G RV+A RR + G +G I Y KF
Sbjct: 36 CPVCGSDNVEPRKLPETGVIETFSIVRSPPAEFVGQAPYVVALVRLDDGTLVPAQITDVEPDEVHEGMRVEAVFRRYREQGEKGIIEYGIKF 127
BLAST of mRNA_P-wetherbeei_contig135.3.1 vs. uniprot
Match: UPI00037FE05A (Zn-ribbon domain-containing OB-fold protein n=1 Tax=Methanomassiliicoccus luminyensis TaxID=1080712 RepID=UPI00037FE05A) HSP 1 Score: 70.5 bits (171), Expect = 2.450e-13 Identity = 38/101 (37.62%), Postives = 58/101 (57.43%), Query Frame = 1
Query: 4 CYACGGSDMVEQELAGTGELTNYTVVYYPPRDFLGQEPYVVGHITMDEGVLMPAPVVGVAPEDIQVGTRVKATLRRMKLGHEGD---IYYSQKFVVDTAPA 297
C+ M +L G GE+ +Y++VY P F Q+PYV+ + MDEGV + ++ V P ++Q+G +V+ T+R K+G EG I+Y KFV PA
Sbjct: 38 CHRKSIGKMEPFKLKGDGEILSYSIVYDAPSQFDIQKPYVIAMVQMDEGVRITGQIIDVDPAEVQIGMKVRTTMR--KIGEEGGAGIIHYGYKFVPVPKPA 136
BLAST of mRNA_P-wetherbeei_contig135.3.1 vs. uniprot
Match: A0A7J3U7Z1_9ARCH (Zn-ribbon domain-containing OB-fold protein n=1 Tax=Thermoplasmatales archaeon TaxID=2268204 RepID=A0A7J3U7Z1_9ARCH) HSP 1 Score: 68.2 bits (165), Expect = 1.770e-12 Identity = 37/84 (44.05%), Postives = 50/84 (59.52%), Query Frame = 1
Query: 28 MVEQELAGTGELTNYTVVYYPPRDFLGQEPYVVGHITMDEGVLMPAPVVGVAPEDIQVGTRVKATLRRMKL-GHEGDIYYSQKF 276
M E +L GTG + YTV+Y PP F G+EPY V I MDEG + +V ++I +G +V+A LRR++ G G I Y KF
Sbjct: 46 MEEYKLKGTGVVETYTVIYTPPPSFEGEEPYAVALIKMDEGCHLLGQIVDCELDEIHIGMKVEACLRRIEEDGTSGAIQYGYKF 129
BLAST of mRNA_P-wetherbeei_contig135.3.1 vs. uniprot
Match: A0A7J3B6J2_9EURY (Zn-ribbon domain-containing OB-fold protein n=1 Tax=Euryarchaeota archaeon TaxID=2026739 RepID=A0A7J3B6J2_9EURY) HSP 1 Score: 67.4 bits (163), Expect = 3.620e-12 Identity = 35/86 (40.70%), Postives = 57/86 (66.28%), Query Frame = 1
Query: 28 MVEQELAGTGELTNYTVVYYPPRDFLGQEPYVVGHITMDEGVLMPAPVVGVAPEDIQVGTRVKATLRRMKL-GHEGDIYYSQKFVV 282
M E+EL+G GE+ ++TVV F Q PY++ I M EG L+ +V +PE++++G++V ATLR++++ G +G I Y KFV+
Sbjct: 47 MREEELSGEGEVYSFTVVRDGLEQFKMQVPYIMAMIRMKEGPLITGQIVDCSPEEVKIGSKVAATLRKVRVEGKDGIIQYGYKFVL 132
BLAST of mRNA_P-wetherbeei_contig135.3.1 vs. uniprot
Match: T0LN08_9ARCH (OB_aCoA_assoc domain-containing protein n=1 Tax=Thermoplasmatales archaeon I-plasma TaxID=667138 RepID=T0LN08_9ARCH) HSP 1 Score: 65.9 bits (159), Expect = 4.210e-12 Identity = 36/81 (44.44%), Postives = 52/81 (64.20%), Query Frame = 1
Query: 43 LAGTGELTNYTVVYYPPRDFLGQEPYVVGHITMDEGVLMPAPVVGVAPEDIQVGTRVKATLRRMKL-GHEGDIYYSQKFVV 282
++G GE+ ++TVV+ F Q PY++ I M EG L+ VV +PE+I++GT+V ATLRR++ G EG I Y KF V
Sbjct: 1 MSGEGEIFSFTVVHDGLEQFKMQIPYIMAIIKMKEGPLVTGQVVDCSPEEIKIGTKVTATLRRVRAEGKEGIIQYGYKFTV 81
BLAST of mRNA_P-wetherbeei_contig135.3.1 vs. uniprot
Match: A0A662KZ91_9ARCH (Transcriptional regulator n=1 Tax=Thermoplasmata archaeon TaxID=1906666 RepID=A0A662KZ91_9ARCH) HSP 1 Score: 67.0 bits (162), Expect = 5.110e-12 Identity = 33/84 (39.29%), Postives = 53/84 (63.10%), Query Frame = 1
Query: 28 MVEQELAGTGELTNYTVVYYPPRDFLGQEPYVVGHITMDEGVLMPAPVVGVAPEDIQVGTRVKATLRRMKL-GHEGDIYYSQKF 276
M + +L+G G + ++TV+ PP +F G+ PYV+ I MDEG + +V + +++ +G RV+A LRR++ G G IYY KF
Sbjct: 46 MEDYKLSGKGTVESFTVIRVPPPEFEGKSPYVMALIKMDEGCYLTGQIVDCSIDEVHIGMRVEACLRRIQEDGKRGAIYYGYKF 129
BLAST of mRNA_P-wetherbeei_contig135.3.1 vs. uniprot
Match: A0A7J2MXG5_9ARCH (Zn-ribbon domain-containing OB-fold protein n=2 Tax=Thermoplasmata TaxID=183967 RepID=A0A7J2MXG5_9ARCH) HSP 1 Score: 66.6 bits (161), Expect = 7.220e-12 Identity = 34/84 (40.48%), Postives = 50/84 (59.52%), Query Frame = 1
Query: 28 MVEQELAGTGELTNYTVVYYPPRDFLGQEPYVVGHITMDEGVLMPAPVVGVAPEDIQVGTRVKATLRRMKL-GHEGDIYYSQKF 276
M + +L G G + +YT++Y P +F G+ PY + I MDEG + +V E+I +G RV+A LRR++ G G IYY KF
Sbjct: 46 MEDYKLNGKGTVESYTIIYTAPPEFEGKTPYAIALIKMDEGCYLTGQIVDCKLEEIHIGMRVEACLRRIQEDGKRGAIYYGYKF 129
BLAST of mRNA_P-wetherbeei_contig135.3.1 vs. uniprot
Match: A0A7J3WU62_9ARCH (Zn-ribbon domain-containing OB-fold protein n=1 Tax=Thermoplasmatales archaeon TaxID=2268204 RepID=A0A7J3WU62_9ARCH) HSP 1 Score: 65.9 bits (159), Expect = 1.440e-11 Identity = 34/84 (40.48%), Postives = 52/84 (61.90%), Query Frame = 1
Query: 28 MVEQELAGTGELTNYTVVYYPPRDFLGQEPYVVGHITMDEGVLMPAPVVGVAPEDIQVGTRVKATLRRMKL-GHEGDIYYSQKF 276
M + +L+G G + YT+++ PP +F G+ PY V I M+EG + A +V ++I VG +V+A LRR++ G G IYY KF
Sbjct: 46 MEDYKLSGKGTVETYTIIHTPPPEFDGKAPYAVAIIKMEEGCHLTAQIVDCPLDEIHVGMKVEACLRRIQEDGKRGAIYYGYKF 129 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig135.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig135.3.1 >prot_P-wetherbeei_contig135.3.1 ID=prot_P-wetherbeei_contig135.3.1|Name=mRNA_P-wetherbeei_contig135.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=92bp MVEQELAGTGELTNYTVVYYPPRDFLGQEPYVVGHITMDEGVLMPAPVVGback to top mRNA from alignment at P-wetherbeei_contig135:2433..2735+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig135.3.1 ID=mRNA_P-wetherbeei_contig135.3.1|Name=mRNA_P-wetherbeei_contig135.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=303bp|location=Sequence derived from alignment at P-wetherbeei_contig135:2433..2735+ (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig135:2433..2735+ >mRNA_P-wetherbeei_contig135.3.1 ID=mRNA_P-wetherbeei_contig135.3.1|Name=mRNA_P-wetherbeei_contig135.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=276bp|location=Sequence derived from alignment at P-wetherbeei_contig135:2433..2735+ (Phaeothamnion wetherbeei SAG_119_79)back to top |