mRNA_P-wetherbeei_contig135.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig135.3.1
Unique NamemRNA_P-wetherbeei_contig135.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig135.3.1 vs. uniprot
Match: UPI001C3E6F7B (OB-fold domain-containing protein n=1 Tax=Miltoncostaea oceani TaxID=2843216 RepID=UPI001C3E6F7B)

HSP 1 Score: 182 bits (463), Expect = 1.380e-57
Identity = 86/100 (86.00%), Postives = 91/100 (91.00%), Query Frame = 1
Query:    1 HCYACGGSDMVEQELAGTGELTNYTVVYYPPRDFLGQEPYVVGHITMDEGVLMPAPVVGVAPEDIQVGTRVKATLRRMKLGHEGDIYYSQKFVVDTAPAA 300
            HCY CG   +VE+EL+G GEL+NYTVVYYPPRDFLGQEPYVVGHITMDEGV MPAPVVGVAPED+ VGTRVKATLRRMKLGHEGDIYYSQKFVVDT  AA
Sbjct:   36 HCYYCGSDTLVEEELSGKGELSNYTVVYYPPRDFLGQEPYVVGHITMDEGVAMPAPVVGVAPEDVTVGTRVKATLRRMKLGHEGDIYYSQKFVVDTDAAA 135          
BLAST of mRNA_P-wetherbeei_contig135.3.1 vs. uniprot
Match: A0A7J3C9Q5_9EURY (Zn-ribbon domain-containing OB-fold protein n=1 Tax=Euryarchaeota archaeon TaxID=2026739 RepID=A0A7J3C9Q5_9EURY)

HSP 1 Score: 75.5 bits (184), Expect = 2.470e-15
Identity = 40/88 (45.45%), Postives = 58/88 (65.91%), Query Frame = 1
Query:   25 DMVEQELAGTGELTNYTVVYYPPRDFLGQEPYVVGHITMDEGVLMPAPVVGVAPEDIQVGTRVKATLRRMKL-GHEGDIYYSQKFVVD 285
            +MVE+EL+G GE+ +YTVV+     F  Q PYV+  I M EG L+   +V   P +IQ+GT+V+A LR+++  G EG I Y  KFV++
Sbjct:   46 NMVEEELSGKGEVYSYTVVHDGLEQFKMQVPYVMAMIRMKEGPLVTGQIVDAEPSEIQIGTKVRAALRKVRTEGKEGIIQYGYKFVLE 133          
BLAST of mRNA_P-wetherbeei_contig135.3.1 vs. uniprot
Match: A0A2J4GAN1_9CREN (Transcriptional regulator n=1 Tax=Thermofilum sp. NZ13 TaxID=1980981 RepID=A0A2J4GAN1_9CREN)

HSP 1 Score: 74.7 bits (182), Expect = 5.070e-15
Identity = 35/92 (38.04%), Postives = 56/92 (60.87%), Query Frame = 1
Query:    4 CYACGGSDMVEQELAGTGELTNYTVVYYPPRDFLGQEPYVVGHITMDEGVLMPAPVVGVAPEDIQVGTRVKATLRRMK-LGHEGDIYYSQKF 276
            C  CG  ++  ++L  TG +  +++V  PP +F+GQ PYVV  + +D+G L+PA +  V P+++  G RV+A  RR +  G +G I Y  KF
Sbjct:   36 CPVCGSDNVEPRKLPETGVIETFSIVRSPPAEFVGQAPYVVALVRLDDGTLVPAQITDVEPDEVHEGMRVEAVFRRYREQGEKGIIEYGIKF 127          
BLAST of mRNA_P-wetherbeei_contig135.3.1 vs. uniprot
Match: UPI00037FE05A (Zn-ribbon domain-containing OB-fold protein n=1 Tax=Methanomassiliicoccus luminyensis TaxID=1080712 RepID=UPI00037FE05A)

HSP 1 Score: 70.5 bits (171), Expect = 2.450e-13
Identity = 38/101 (37.62%), Postives = 58/101 (57.43%), Query Frame = 1
Query:    4 CYACGGSDMVEQELAGTGELTNYTVVYYPPRDFLGQEPYVVGHITMDEGVLMPAPVVGVAPEDIQVGTRVKATLRRMKLGHEGD---IYYSQKFVVDTAPA 297
            C+      M   +L G GE+ +Y++VY  P  F  Q+PYV+  + MDEGV +   ++ V P ++Q+G +V+ T+R  K+G EG    I+Y  KFV    PA
Sbjct:   38 CHRKSIGKMEPFKLKGDGEILSYSIVYDAPSQFDIQKPYVIAMVQMDEGVRITGQIIDVDPAEVQIGMKVRTTMR--KIGEEGGAGIIHYGYKFVPVPKPA 136          
BLAST of mRNA_P-wetherbeei_contig135.3.1 vs. uniprot
Match: A0A7J3U7Z1_9ARCH (Zn-ribbon domain-containing OB-fold protein n=1 Tax=Thermoplasmatales archaeon TaxID=2268204 RepID=A0A7J3U7Z1_9ARCH)

HSP 1 Score: 68.2 bits (165), Expect = 1.770e-12
Identity = 37/84 (44.05%), Postives = 50/84 (59.52%), Query Frame = 1
Query:   28 MVEQELAGTGELTNYTVVYYPPRDFLGQEPYVVGHITMDEGVLMPAPVVGVAPEDIQVGTRVKATLRRMKL-GHEGDIYYSQKF 276
            M E +L GTG +  YTV+Y PP  F G+EPY V  I MDEG  +   +V    ++I +G +V+A LRR++  G  G I Y  KF
Sbjct:   46 MEEYKLKGTGVVETYTVIYTPPPSFEGEEPYAVALIKMDEGCHLLGQIVDCELDEIHIGMKVEACLRRIEEDGTSGAIQYGYKF 129          
BLAST of mRNA_P-wetherbeei_contig135.3.1 vs. uniprot
Match: A0A7J3B6J2_9EURY (Zn-ribbon domain-containing OB-fold protein n=1 Tax=Euryarchaeota archaeon TaxID=2026739 RepID=A0A7J3B6J2_9EURY)

HSP 1 Score: 67.4 bits (163), Expect = 3.620e-12
Identity = 35/86 (40.70%), Postives = 57/86 (66.28%), Query Frame = 1
Query:   28 MVEQELAGTGELTNYTVVYYPPRDFLGQEPYVVGHITMDEGVLMPAPVVGVAPEDIQVGTRVKATLRRMKL-GHEGDIYYSQKFVV 282
            M E+EL+G GE+ ++TVV      F  Q PY++  I M EG L+   +V  +PE++++G++V ATLR++++ G +G I Y  KFV+
Sbjct:   47 MREEELSGEGEVYSFTVVRDGLEQFKMQVPYIMAMIRMKEGPLITGQIVDCSPEEVKIGSKVAATLRKVRVEGKDGIIQYGYKFVL 132          
BLAST of mRNA_P-wetherbeei_contig135.3.1 vs. uniprot
Match: T0LN08_9ARCH (OB_aCoA_assoc domain-containing protein n=1 Tax=Thermoplasmatales archaeon I-plasma TaxID=667138 RepID=T0LN08_9ARCH)

HSP 1 Score: 65.9 bits (159), Expect = 4.210e-12
Identity = 36/81 (44.44%), Postives = 52/81 (64.20%), Query Frame = 1
Query:   43 LAGTGELTNYTVVYYPPRDFLGQEPYVVGHITMDEGVLMPAPVVGVAPEDIQVGTRVKATLRRMKL-GHEGDIYYSQKFVV 282
            ++G GE+ ++TVV+     F  Q PY++  I M EG L+   VV  +PE+I++GT+V ATLRR++  G EG I Y  KF V
Sbjct:    1 MSGEGEIFSFTVVHDGLEQFKMQIPYIMAIIKMKEGPLVTGQVVDCSPEEIKIGTKVTATLRRVRAEGKEGIIQYGYKFTV 81          
BLAST of mRNA_P-wetherbeei_contig135.3.1 vs. uniprot
Match: A0A662KZ91_9ARCH (Transcriptional regulator n=1 Tax=Thermoplasmata archaeon TaxID=1906666 RepID=A0A662KZ91_9ARCH)

HSP 1 Score: 67.0 bits (162), Expect = 5.110e-12
Identity = 33/84 (39.29%), Postives = 53/84 (63.10%), Query Frame = 1
Query:   28 MVEQELAGTGELTNYTVVYYPPRDFLGQEPYVVGHITMDEGVLMPAPVVGVAPEDIQVGTRVKATLRRMKL-GHEGDIYYSQKF 276
            M + +L+G G + ++TV+  PP +F G+ PYV+  I MDEG  +   +V  + +++ +G RV+A LRR++  G  G IYY  KF
Sbjct:   46 MEDYKLSGKGTVESFTVIRVPPPEFEGKSPYVMALIKMDEGCYLTGQIVDCSIDEVHIGMRVEACLRRIQEDGKRGAIYYGYKF 129          
BLAST of mRNA_P-wetherbeei_contig135.3.1 vs. uniprot
Match: A0A7J2MXG5_9ARCH (Zn-ribbon domain-containing OB-fold protein n=2 Tax=Thermoplasmata TaxID=183967 RepID=A0A7J2MXG5_9ARCH)

HSP 1 Score: 66.6 bits (161), Expect = 7.220e-12
Identity = 34/84 (40.48%), Postives = 50/84 (59.52%), Query Frame = 1
Query:   28 MVEQELAGTGELTNYTVVYYPPRDFLGQEPYVVGHITMDEGVLMPAPVVGVAPEDIQVGTRVKATLRRMKL-GHEGDIYYSQKF 276
            M + +L G G + +YT++Y  P +F G+ PY +  I MDEG  +   +V    E+I +G RV+A LRR++  G  G IYY  KF
Sbjct:   46 MEDYKLNGKGTVESYTIIYTAPPEFEGKTPYAIALIKMDEGCYLTGQIVDCKLEEIHIGMRVEACLRRIQEDGKRGAIYYGYKF 129          
BLAST of mRNA_P-wetherbeei_contig135.3.1 vs. uniprot
Match: A0A7J3WU62_9ARCH (Zn-ribbon domain-containing OB-fold protein n=1 Tax=Thermoplasmatales archaeon TaxID=2268204 RepID=A0A7J3WU62_9ARCH)

HSP 1 Score: 65.9 bits (159), Expect = 1.440e-11
Identity = 34/84 (40.48%), Postives = 52/84 (61.90%), Query Frame = 1
Query:   28 MVEQELAGTGELTNYTVVYYPPRDFLGQEPYVVGHITMDEGVLMPAPVVGVAPEDIQVGTRVKATLRRMKL-GHEGDIYYSQKF 276
            M + +L+G G +  YT+++ PP +F G+ PY V  I M+EG  + A +V    ++I VG +V+A LRR++  G  G IYY  KF
Sbjct:   46 MEDYKLSGKGTVETYTIIHTPPPEFDGKAPYAVAIIKMEEGCHLTAQIVDCPLDEIHVGMKVEACLRRIQEDGKRGAIYYGYKF 129          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig135.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001C3E6F7B1.380e-5786.00OB-fold domain-containing protein n=1 Tax=Miltonco... [more]
A0A7J3C9Q5_9EURY2.470e-1545.45Zn-ribbon domain-containing OB-fold protein n=1 Ta... [more]
A0A2J4GAN1_9CREN5.070e-1538.04Transcriptional regulator n=1 Tax=Thermofilum sp. ... [more]
UPI00037FE05A2.450e-1337.62Zn-ribbon domain-containing OB-fold protein n=1 Ta... [more]
A0A7J3U7Z1_9ARCH1.770e-1244.05Zn-ribbon domain-containing OB-fold protein n=1 Ta... [more]
A0A7J3B6J2_9EURY3.620e-1240.70Zn-ribbon domain-containing OB-fold protein n=1 Ta... [more]
T0LN08_9ARCH4.210e-1244.44OB_aCoA_assoc domain-containing protein n=1 Tax=Th... [more]
A0A662KZ91_9ARCH5.110e-1239.29Transcriptional regulator n=1 Tax=Thermoplasmata a... [more]
A0A7J2MXG5_9ARCH7.220e-1240.48Zn-ribbon domain-containing OB-fold protein n=2 Ta... [more]
A0A7J3WU62_9ARCH1.440e-1140.48Zn-ribbon domain-containing OB-fold protein n=1 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig135contigP-wetherbeei_contig135:2433..2735 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog573063.Metin_0435
PFAMsDUF35_N,OB_aCoA_assoc
Model size303
Max annot lvl183939|Methanococci
KEGG koko:K07068
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.76e-11
EggNOG OGsCOG1545@1|root,arCOG01285@2157|Archaea,2XXGF@28890|Euryarchaeota,23QWX@183939|Methanococci
DescriptionDUF35 OB-fold domain, acyl-CoA-associated
Cds size276
COG categoryV
BRITEko00000
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185987.728478-UTR-P-wetherbeei_contig135:2432..24591683185987.728478-UTR-P-wetherbeei_contig135:2432..2459Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig135 2433..2459 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185987.742556-CDS-P-wetherbeei_contig135:2459..27351683185987.742556-CDS-P-wetherbeei_contig135:2459..2735Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig135 2460..2735 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig135.3.1prot_P-wetherbeei_contig135.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig135 2460..2735 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig135.3.1

>prot_P-wetherbeei_contig135.3.1 ID=prot_P-wetherbeei_contig135.3.1|Name=mRNA_P-wetherbeei_contig135.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=92bp
MVEQELAGTGELTNYTVVYYPPRDFLGQEPYVVGHITMDEGVLMPAPVVG
VAPEDIQVGTRVKATLRRMKLGHEGDIYYSQKFVVDTAPAA*
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mRNA from alignment at P-wetherbeei_contig135:2433..2735+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig135.3.1 ID=mRNA_P-wetherbeei_contig135.3.1|Name=mRNA_P-wetherbeei_contig135.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=303bp|location=Sequence derived from alignment at P-wetherbeei_contig135:2433..2735+ (Phaeothamnion wetherbeei SAG_119_79)
CACTGCTATGCCTGCGGCGGCTCCGACATGGTCGAGCAGGAGCTGGCCGG CACGGGTGAGCTGACCAACTACACGGTCGTCTACTACCCGCCGCGAGACT TCCTCGGCCAGGAGCCGTACGTGGTCGGCCACATCACCATGGACGAGGGA GTGCTCATGCCCGCCCCCGTGGTGGGCGTCGCTCCCGAGGACATCCAGGT GGGCACCCGCGTGAAGGCCACCCTGCGCCGGATGAAGCTCGGCCACGAGG GCGACATCTACTACTCGCAGAAGTTCGTGGTCGACACCGCACCCGCCGCG TAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig135:2433..2735+

>mRNA_P-wetherbeei_contig135.3.1 ID=mRNA_P-wetherbeei_contig135.3.1|Name=mRNA_P-wetherbeei_contig135.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=276bp|location=Sequence derived from alignment at P-wetherbeei_contig135:2433..2735+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGTCGAGCAGGAGCTGGCCGGCACGGGTGAGCTGACCAACTACACGGT
CGTCTACTACCCGCCGCGAGACTTCCTCGGCCAGGAGCCGTACGTGGTCG
GCCACATCACCATGGACGAGGGAGTGCTCATGCCCGCCCCCGTGGTGGGC
GTCGCTCCCGAGGACATCCAGGTGGGCACCCGCGTGAAGGCCACCCTGCG
CCGGATGAAGCTCGGCCACGAGGGCGACATCTACTACTCGCAGAAGTTCG
TGGTCGACACCGCACCCGCCGCGTAG
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