mRNA_P-wetherbeei_contig13488.1.3 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig13488.1.3
Unique NamemRNA_P-wetherbeei_contig13488.1.3
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig13488.1.3 vs. uniprot
Match: D7FP08_ECTSI (C-CAP/cofactor C-like domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FP08_ECTSI)

HSP 1 Score: 264 bits (674), Expect = 6.370e-83
Identity = 149/282 (52.84%), Postives = 179/282 (63.48%), Query Frame = 1
Query:    1 RDLQINHCHEAYLYVLAPVRFATVMGCSDCTIVVGAVAGVVRVIECERIQLVTCCRRISVGNCLDCVFSVFCASNPVLSGDNRTCQFAPYNTCYPRLTQHLRAAGLPTSSPPAV--NLWNSPVDVSTMGMPSFHVSQGAAXXXXXXXXXXXXXXXXXXXXXXXXRRVADMLSSGSALMPPEQFYTLTVPVTCPDDIDPRDVENPFALPSDYATVLREREAAMLELQAAIDAGSLPLQQQRDVEEMVRDKFTEWLVTTGNLRQVLDLVNL-EKAANHHPAAAA 837
            RDLQ+N C E+Y+YVL+ VRFATVMGC DCT+V+GA AG+VRV ECER+QLVTCCRR++V N L+C+F VF A+ PVL GDNR CQFAPYN+CYPR   HL+ AGL       V  NLW +PV+ S MGMPS       +                                   A+MPPEQFYTL VPV  PD       ENPF LPS+YA VL+EREAA+  L  AI    L  +Q R++EE +R +FTEWLV TGNLRQVLDLV++ EKA +   A AA
Sbjct:  119 RDLQVNCCQESYVYVLSAVRFATVMGCKDCTVVIGAAAGMVRVEECERMQLVTCCRRLTVTNSLECIFPVFVATPPVLCGDNRACQFAPYNSCYPRHKAHLQRAGLLGEEEDEVPANLWGNPVEASMMGMPSMAAGTPTSSASRAKSRSPGGAKGGLGGLGHDL---------SPAIMPPEQFYTLAVPVP-PDSAGDPPAENPFGLPSEYAAVLQEREAAVEGLHQAIVDADLTPRQNRELEECIRGRFTEWLVATGNLRQVLDLVSVAEKARSTGNATAA 390          
BLAST of mRNA_P-wetherbeei_contig13488.1.3 vs. uniprot
Match: A0A835Z1R1_9STRA (Tubulin binding cofactor C-domain-containing protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1R1_9STRA)

HSP 1 Score: 201 bits (512), Expect = 2.210e-56
Identity = 126/299 (42.14%), Postives = 168/299 (56.19%), Query Frame = 1
Query:    1 RDLQINHCHEAYLYVLAPVRFATVMGCSDCTIVVGAVAGVVRVIECERIQLVTCCRRISVGNCLDCVFSVFCASNPVLSGDNRTCQFAPYNTCYPRLTQHLRAAGLPTSSPPAV-------------NLWNSPVDVSTMGMPSFHVSQGAAXXXXXXXXXXXXXXXXXXXXXXXXRRVADMLSSGSAL--MPPEQFYTLTVPVTCPDDI---------------DPRDVENPFALPSDYATVLREREAAMLELQAAIDAGSLPLQQQRDVEEMVRDKFTEWLVTTGNLRQVLDLVNLEK 807
            R LQ++HCHE+Y+Y+LAP ++ATV+GCS+CTIVVGA AGVVR+ +C R+ L+  CRR    NC +C   ++  S P+  GDNR CQ APYN  YPRL  HL A GL    P                N+W SP+D++               XXXXXXXXXX                   L+S SA+  MPP+ F+ +++P     D                +     NPF LP +YA  LREREA + +LQ  +    L  +QQR++EE VR +FTEWLV++G+LRQVLDLV+LE+
Sbjct:  366 RSLQVSHCHESYVYMLAPFQYATVLGCSECTIVVGAAAGVVRLEDCTRVTLIAACRRACAVNCCECALHLYAPSRPLFVGDNRACQVAPYNAAYPRLRAHLAACGLLPPLPXXXXXXXXXXXXXXXRNMWFSPLDLNA----------APTVXXXXXXXXXXALTPRTAAKAGADEAHPHALASASAVTQMPPDAFHCVSIPACAGGDEXXXXXXXXXXXXXXREATQALNPFPLPPEYANKLREREALLQQLQQVVQGAQLSPRQQRELEEAVRGRFTEWLVSSGHLRQVLDLVHLER 654          
BLAST of mRNA_P-wetherbeei_contig13488.1.3 vs. uniprot
Match: A0A7S3XVC9_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XVC9_HETAK)

HSP 1 Score: 157 bits (398), Expect = 4.160e-43
Identity = 73/132 (55.30%), Postives = 98/132 (74.24%), Query Frame = 1
Query:    1 RDLQINHCHEAYLYVLAPVRFATVMGCSDCTIVVGAVAGVVRVIECERIQLVTCCRRISVGNCLDCVFSVFCASNPVLSGDNRTCQFAPYNTC-YPRLTQHLRAAGLPTSSPPA-VNLWNSPVDVSTMGMPS 390
            R + +NHCH++Y+Y+L   + ATV+GC+DCT+V+GA++G+V V+ECERIQLVTCCRR+ + NCLD VF    A+ PVL GD+R C+ AP N   YP L  HLR AGLP  + PA VN WN+PVD++  G+ S
Sbjct:  140 RAVHVNHCHDSYIYLLGAFKSATVLGCTDCTVVIGAISGMVNVVECERIQLVTCCRRLVINNCLDSVFPTLAATPPVLHGDHRACRLAPPNHAGYPALAAHLRRAGLPDGTAPATVNFWNAPVDLNQAGLAS 271          
BLAST of mRNA_P-wetherbeei_contig13488.1.3 vs. uniprot
Match: A0A4D9CT44_9STRA (C-CAP/cofactor C-like domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CT44_9STRA)

HSP 1 Score: 160 bits (404), Expect = 1.020e-40
Identity = 105/283 (37.10%), Postives = 138/283 (48.76%), Query Frame = 1
Query:    1 RDLQINHCHEAYLYVLAPVRFATVMGCSDCTIVVGAVAGVVRVIECERIQLVTCCRRISVGNCLDCVFSVFCASNPVLSGDNRTCQFAPYNTCYPRLTQHLRAAGL-PTSSPPAVNLWNSPVDVSTMGMPSFHVSQGAAXXXXXXXXXXXXXXXXXXXXXXXXRRVADMLSSGSALMPPEQFYTLTVPVTC-------------PDDIDPRDVENPFALPSDYATVLREREAAMLELQAAIDAGSLPLQQQRDVEEMVRDKFTEWLVTTGNLRQVLDLVNLEK 807
            R + +  CH+A +Y+L P+                AVAG+VRV  CER+ LV   RR+ V NCLD  F V+     VL GDNR C+ APYNTCYP L   LR AG     S    N W+SP+D++          +G                          +  A      S ++PPEQFYTL++PV               P+   P  + NPF LP +YA+VLRER   +  LQ  +  GSL  +Q+  VE  +  KF EWL  +GNLRQVLDL+ LE+
Sbjct:  561 RRVHVQACHDANVYLLGPIESXXXXXXXXXXXXXXAVAGLVRVSNCERLTLVCAARRLVVCNCLDSTFPVYLLRPAVLVGDNRGCRLAPYNTCYPSLPLDLRTAGFGELGSTQPRNQWDSPIDLTAGAHNGAGGGEGGLGLTREGSHGGKGDRDNGRNAGLAGQEGA-RAGGESRILPPEQFYTLSIPVPPSSSPGLPGQGPMPPEGSPPTLLYNPFPLPPEYASVLRERSVGLDRLQQTV-IGSLSDEQRPGVEAALVSKFYEWLAASGNLRQVLDLIQLER 841          
BLAST of mRNA_P-wetherbeei_contig13488.1.3 vs. uniprot
Match: A0A7S0NAY6_9CHLO (Hypothetical protein n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0NAY6_9CHLO)

HSP 1 Score: 150 bits (379), Expect = 1.980e-40
Identity = 87/274 (31.75%), Postives = 140/274 (51.09%), Query Frame = 1
Query:    4 DLQINHCHEAYLYVLAPVRFATVMGCSDCTIVVGAVAGVVRVIECERIQLVTCCRRISVGNCLDCVFSVFCASNPVLSGDNRTCQFAPYNTCYPRLTQHLRAAGLPTSSPPAVNLWNSPVDVSTMGMPSFHVSQGAAXXXXXXXXXXXXXXXXXXXXXXXXRRVADMLSSGSALMPPEQFYTLTVPV-----TCPDDIDPRDVENPFALPSDYATVLREREAAMLELQAAIDAGSLPLQQQRDVEEMVRDKFTEWLVTTGNLRQVLDLVNLEKA 810
             +++  C +  +Y+LAP++  ++ GC+DC IVVGAV+G ++V  CER+ LV+  RR+ V +C D  F +     PV+ GD R  Q APYNT Y RL  HLR A + T    A N W++PV +++      H    ++                            D  S   AL+PPE+F    +P      +  D + P    NPF +P  Y+  L ++  A+ +++  +    L    +RD++ +++  F EWLV +GN+RQV DL  +E++
Sbjct:   26 SVRVADCQDTVVYLLAPMQHVSICGCTDCIIVVGAVSGSLKVDLCERVHLVSASRRLRVSSCRDSTFCIAVNHPPVVMGDCRNLQLAPYNTYYERLDAHLRVANVRT----APNRWDAPVSLTS----KLHTDTSSSPSTSNPTSSP------------------DSASRVVALLPPEKFLPFMIPFRGAPPSAEDQLRPSTTANPFTMPQQYSAALEQKVQAVEDMRKNVKEAGLDGANKRDLQTVIQAYFKEWLVVSGNMRQVYDLARMERS 273          
BLAST of mRNA_P-wetherbeei_contig13488.1.3 vs. uniprot
Match: A0A843UME2_COLES (TBCC domain-containing protein 1 n=1 Tax=Colocasia esculenta TaxID=4460 RepID=A0A843UME2_COLES)

HSP 1 Score: 147 bits (370), Expect = 6.810e-38
Identity = 84/260 (32.31%), Postives = 134/260 (51.54%), Query Frame = 1
Query:    4 DLQINHCHEAYLYVLAPVRFATVMGCSDCTIVVGAVAGVVRVIECERIQLVTCCRRISVGNCLDCVFSVFCASNPVLSGDNRTCQFAPYNTCYPRLTQHLRAAGLPTSSPPAVNLWNSPVDVSTMGMPSFHVSQGAAXXXXXXXXXXXXXXXXXXXXXXXXRRVADMLSSGSALMPPEQFYTLTVPVTCPDDIDPRDVENPFALPSDYATVLREREAAMLELQAAIDAGSLPLQQQRDVEEMVRDKFTEWLVTTGNLRQV 783
             +++ +CH++ +Y+LAP+R+AT+ GCSD TIV+GA+   VRV  CER+Q++   RRI + NC +CVF +     P++ GDN   Q APYNT Y +L +H+   GL T    A+N WN  + +  +  P   +S  A                           V+D+ +  +A + P+QF    +P     +      +NPF LP  Y T  R R   + ++Q AI    L   ++R++   +   F +WL  +GN+RQ+
Sbjct:  164 SVKVLNCHDSVIYILAPLRYATIYGCSDATIVLGAIGKAVRVEHCERVQVIAAARRICIANCRECVFFLGVNQRPLILGDNHKLQVAPYNTFYSQLNEHMTQVGLNT----AINRWNESLVLGVVD-PHDSLSHPAG--------------------------VSDVQAESAACLDPDQFTDFLIPSWFGGESAQPTKDNPFQLPEIYMTSQRRRHLVLDDIQRAIRDAHLEENRKRELASALHVHFKDWLYASGNIRQL 392          
BLAST of mRNA_P-wetherbeei_contig13488.1.3 vs. uniprot
Match: A0A1D1YG00_9ARAE (TBCC domain-containing protein 1 (Fragment) n=1 Tax=Anthurium amnicola TaxID=1678845 RepID=A0A1D1YG00_9ARAE)

HSP 1 Score: 146 bits (369), Expect = 1.100e-36
Identity = 84/260 (32.31%), Postives = 132/260 (50.77%), Query Frame = 1
Query:    4 DLQINHCHEAYLYVLAPVRFATVMGCSDCTIVVGAVAGVVRVIECERIQLVTCCRRISVGNCLDCVFSVFCASNPVLSGDNRTCQFAPYNTCYPRLTQHLRAAGLPTSSPPAVNLWNSPVDVSTMGMPSFHVSQGAAXXXXXXXXXXXXXXXXXXXXXXXXRRVADMLSSGSALMPPEQFYTLTVPVTCPDDIDPRDVENPFALPSDYATVLREREAAMLELQAAIDAGSLPLQQQRDVEEMVRDKFTEWLVTTGNLRQV 783
             ++I +CH++ +Y+LAP+R+AT+ GCSD TIV+GA+   VRV  CER+Q++   +RI + NC +CVF +     P++ GDN   Q APYNT Y +L +H+   GL T     +N WN P+    +GM   H S                              V+D+ +  +  + P+QF    +P     +      +NPF LP  Y T  R     + +LQ AI    L   ++R++  ++   F +WL  +GN+RQ+
Sbjct:  329 SVKILNCHDSVIYILAPLRYATIYGCSDATIVLGAIGKAVRVEHCERVQVIAAAKRICIANCRECVFFLGVNQRPLILGDNHKLQVAPYNTFYSQLIEHMAQLGLNTD----INRWNEPL---VLGMVDPHDSLSHPAG------------------------VSDVQAESATCLDPDQFTNFMIPSWFGGESAQPTKDNPFRLPEMYMTSQRRHHLVLDDLQRAIREAQLEENRKRELASVLHVYFKDWLYASGNIRQL 557          
BLAST of mRNA_P-wetherbeei_contig13488.1.3 vs. uniprot
Match: B8BJN6_ORYSI (TBCC domain-containing protein 1 n=2 Tax=Oryza sativa subsp. indica TaxID=39946 RepID=B8BJN6_ORYSI)

HSP 1 Score: 142 bits (357), Expect = 2.010e-36
Identity = 82/257 (31.91%), Postives = 132/257 (51.36%), Query Frame = 1
Query:   13 INHCHEAYLYVLAPVRFATVMGCSDCTIVVGAVAGVVRVIECERIQLVTCCRRISVGNCLDCVFSVFCASNPVLSGDNRTCQFAPYNTCYPRLTQHLRAAGLPTSSPPAVNLWNSPVDVSTMGMPSFHVSQGAAXXXXXXXXXXXXXXXXXXXXXXXXRRVADMLSSGSALMPPEQFYTLTVPVTCPDDIDPRDVENPFALPSDYATVLREREAAMLELQAAIDAGSLPLQQQRDVEEMVRDKFTEWLVTTGNLRQV 783
            + +CH++ +Y+LAP+++ATV GCSD TIV+GAV  VV+V  CER+ ++   +RI + NC +C+F +     P++ GDN   Q AP+NTCYP+L  HL   G+     P+VN W+ P  +  +  P   +S  A                           V+D+ +  +  + P+ F    VP    D+       NPF LP  Y T   ++ +A+ ++Q  I    L   ++RD+   +  +F  WL  +GN+RQ+
Sbjct:  118 VLNCHDSVIYILAPLKYATVYGCSDATIVLGAVGKVVKVEHCERVHIIAASKRICIANCHECIFYLGVNHQPLVLGDNHNLQVAPFNTCYPQLQDHLMQVGVD----PSVNKWDQPFVLGVVD-PHDSLSHPAG--------------------------VSDVKAESATCLDPDLFTNFLVPSWFGDETQEPTNCNPFPLPEIYGTFQSKKHSALEDIQKTIWELQLDENRKRDLATALHAQFKGWLYASGNIRQL 343          
BLAST of mRNA_P-wetherbeei_contig13488.1.3 vs. uniprot
Match: UPI000C1D65E0 (TBCC domain-containing protein 1-like n=1 Tax=Olea europaea var. sylvestris TaxID=158386 RepID=UPI000C1D65E0)

HSP 1 Score: 145 bits (367), Expect = 2.440e-36
Identity = 82/260 (31.54%), Postives = 133/260 (51.15%), Query Frame = 1
Query:    4 DLQINHCHEAYLYVLAPVRFATVMGCSDCTIVVGAVAGVVRVIECERIQLVTCCRRISVGNCLDCVFSVFCASNPVLSGDNRTCQFAPYNTCYPRLTQHLRAAGLPTSSPPAVNLWNSPVDVSTMGMPSFHVSQGAAXXXXXXXXXXXXXXXXXXXXXXXXRRVADMLSSGSALMPPEQFYTLTVPVTCPDDIDPRDVENPFALPSDYATVLREREAAMLELQAAIDAGSLPLQQQRDVEEMVRDKFTEWLVTTGNLRQV 783
             +++ +CHE+ +Y+LAP+R+ATV GCSD TIV+GAV   VRV  CER+ L+T  +RI + NC +CVF +     P++ GDN   Q APYNT Y +L +H+   G+     P++N W+ PV +  +  P   +S  A                           V+D+ +  +  + P+Q+    +P    D+ D    +NPF LP  Y    +     M E++  +    L   ++R++   +   F +WL  +GN+RQ+
Sbjct:  344 SVKVVNCHESVIYILAPLRYATVYGCSDATIVLGAVGKAVRVEHCERVHLITAAKRICIANCRECVFFLGVNQQPLMVGDNHKLQVAPYNTFYSQLEEHMNQVGID----PSINRWDEPVALGVVD-PHDSLSHPAG--------------------------VSDVQAESATRLDPDQYTNFLIPNWWGDEFDGSTKDNPFTLPHAYLASQQRNHKNMEEIKQILRETPLEDSRKRELSSALHVYFKDWLYASGNIRQL 572          
BLAST of mRNA_P-wetherbeei_contig13488.1.3 vs. uniprot
Match: A0A1U7ZSW2_NELNU (TBCC domain-containing protein 1 n=1 Tax=Nelumbo nucifera TaxID=4432 RepID=A0A1U7ZSW2_NELNU)

HSP 1 Score: 145 bits (366), Expect = 3.280e-36
Identity = 82/260 (31.54%), Postives = 134/260 (51.54%), Query Frame = 1
Query:    4 DLQINHCHEAYLYVLAPVRFATVMGCSDCTIVVGAVAGVVRVIECERIQLVTCCRRISVGNCLDCVFSVFCASNPVLSGDNRTCQFAPYNTCYPRLTQHLRAAGLPTSSPPAVNLWNSPVDVSTMGMPSFHVSQGAAXXXXXXXXXXXXXXXXXXXXXXXXRRVADMLSSGSALMPPEQFYTLTVPVTCPDDIDPRDVENPFALPSDYATVLREREAAMLELQAAIDAGSLPLQQQRDVEEMVRDKFTEWLVTTGNLRQV 783
             +++ +CH++ +Y+LAP+R+ATV GCSD TIV+GAV   VRV  CER+Q++   +RI + NC +C+F +     P++ GDN   Q APYNT YP+L +H+   G+ TS    +N WN P+    +GM   H S                              V+D+ +  +  + P+QF    +P     +       NPF+LP  Y    ++    + E++ A+    L   ++R++   +   F +WL T+GN+RQ+
Sbjct:  341 SVKVLNCHDSVIYILAPLRYATVYGCSDATIVLGAVGKAVRVEHCERVQVIAAAKRICIANCRECLFFLGVNQQPLILGDNHKLQVAPYNTFYPQLKEHMTQVGVDTS----INRWNEPM---VLGMVDPHDSLSHPAG------------------------VSDVQAESATCLDPDQFTNFLIPNWVGGESPESTKHNPFSLPETYMASQQKNHQNLGEIKQALRDLQLEESRKRELSNALHIYFKDWLYTSGNIRQL 569          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig13488.1.3 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FP08_ECTSI6.370e-8352.84C-CAP/cofactor C-like domain-containing protein n=... [more]
A0A835Z1R1_9STRA2.210e-5642.14Tubulin binding cofactor C-domain-containing prote... [more]
A0A7S3XVC9_HETAK4.160e-4355.30Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A4D9CT44_9STRA1.020e-4037.10C-CAP/cofactor C-like domain-containing protein n=... [more]
A0A7S0NAY6_9CHLO1.980e-4031.75Hypothetical protein n=1 Tax=Pyramimonas obovata T... [more]
A0A843UME2_COLES6.810e-3832.31TBCC domain-containing protein 1 n=1 Tax=Colocasia... [more]
A0A1D1YG00_9ARAE1.100e-3632.31TBCC domain-containing protein 1 (Fragment) n=1 Ta... [more]
B8BJN6_ORYSI2.010e-3631.91TBCC domain-containing protein 1 n=2 Tax=Oryza sat... [more]
UPI000C1D65E02.440e-3631.54TBCC domain-containing protein 1-like n=1 Tax=Olea... [more]
A0A1U7ZSW2_NELNU3.280e-3631.54TBCC domain-containing protein 1 n=1 Tax=Nelumbo n... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig13488contigP-wetherbeei_contig13488:86..1641 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FP08
Preferred nameTBCCD1
PFAMsTBCC
Model size837
Max annot lvl2759|Eukaryota
KEGG koko:K16810
Hectar predicted targeting categoryother localisation
GOsGO:0000922,GO:0005575,GO:0005622,GO:0005623,GO:0005813,GO:0005815,GO:0005819,GO:0005856,GO:0008150,GO:0008360,GO:0009987,GO:0015630,GO:0022603,GO:0022604,GO:0030334,GO:0031616,GO:0032879,GO:0040012,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044422,GO:0044424,GO:0044430,GO:0044446,GO:0044464,GO:0050789,GO:0050793,GO:0050794,GO:0051128,GO:0051179,GO:0051235,GO:0051270,GO:0051640,GO:0051641,GO:0051642,GO:0051645,GO:0051651,GO:0051657,GO:0051661,GO:0051684,GO:0061842,GO:0065007,GO:0065008,GO:2000145
Exons4
Evalue1.05e-83
EggNOG OGsKOG4416@1|root,KOG4416@2759|Eukaryota
Descriptionmaintenance of Golgi location
Cds size837
COG categoryS
BRITEko00000,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185987.2009957-CDS-P-wetherbeei_contig13488:85..3981683185987.2009957-CDS-P-wetherbeei_contig13488:85..398Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13488 86..398 +
1683185987.2128518-CDS-P-wetherbeei_contig13488:733..8251683185987.2128518-CDS-P-wetherbeei_contig13488:733..825Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13488 734..825 +
1683185987.2228062-CDS-P-wetherbeei_contig13488:979..11681683185987.2228062-CDS-P-wetherbeei_contig13488:979..1168Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13488 980..1168 +
1683185987.232445-CDS-P-wetherbeei_contig13488:1398..16411683185987.232445-CDS-P-wetherbeei_contig13488:1398..1641Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13488 1399..1641 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig13488.1.3prot_P-wetherbeei_contig13488.1.3Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig13488 86..1641 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig13488.1.3

>prot_P-wetherbeei_contig13488.1.3 ID=prot_P-wetherbeei_contig13488.1.3|Name=mRNA_P-wetherbeei_contig13488.1.3|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=279bp
RDLQINHCHEAYLYVLAPVRFATVMGCSDCTIVVGAVAGVVRVIECERIQ
LVTCCRRISVGNCLDCVFSVFCASNPVLSGDNRTCQFAPYNTCYPRLTQH
LRAAGLPTSSPPAVNLWNSPVDVSTMGMPSFHVSQGAAAAAAASPVHRRP
GSRGSGGGTAASRRVADMLSSGSALMPPEQFYTLTVPVTCPDDIDPRDVE
NPFALPSDYATVLREREAAMLELQAAIDAGSLPLQQQRDVEEMVRDKFTE
WLVTTGNLRQVLDLVNLEKAANHHPAAAA
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mRNA from alignment at P-wetherbeei_contig13488:86..1641+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig13488.1.3 ID=mRNA_P-wetherbeei_contig13488.1.3|Name=mRNA_P-wetherbeei_contig13488.1.3|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1556bp|location=Sequence derived from alignment at P-wetherbeei_contig13488:86..1641+ (Phaeothamnion wetherbeei SAG_119_79)
CGCGACCTGCAAATCAACCACTGTCACGAGGCGTATCTGTACGTGCTCGC GCCGGTGCGTTTTGCGACGGTGATGGGGTGCTCCGACTGCACCATCGTGG TGGGCGCCGTGGCGGGCGTGGTGCGGGTCATCGAGTGCGAGCGCATCCAG CTGGTGACGTGCTGCCGGCGCATCAGTGTCGGCAACTGCCTGGACTGTGT CTTCTCTGTGTTTTGCGCCTCCAACCCCGTGCTCAGCGGCGATAACCGCA CCTGCCAGTTCGCACCCTACAACACGTGCTACCCGCGGCTGACGCAGCAC CTCCGGGCAGCAGGTGAGAGAAATATATGTCGTACGGCGGCCGTTGCGGC TTGCCGCTGTGTTTTGGGAACTGTAATGTGAAGAGAGAGTACGTACGAGT TGTAGCTGCCAGCCTTTCTTCCGTGAGGGTTGGAAAGGCCGGAACAACAT TTTTATGACCTTCTTCTCTAGACAGGTAACAGCCGCATTGACTGGCGCCG CGCTCTTCCAGTTGCAAGTAGGGATGATTTCCTGGCATTCTTTTCTGGAC ATCTTTCTTCGGAATGAATGTTGTCGGGTTGAACGATCTGAGTTAGACTC TGCTTGGCTTGTAACTTAACCTTGCTGAAATCTTTTGCCGCTTTGCAGGT CTGCCGACGTCAAGCCCTCCGGCCGTTAACCTATGGAACAGCCCTGTCGA TGTCTCCACGATGGGCATGCCATCGTTCCATGTCTCGCAGGTGGGTGTTA GTAGGCATTGCGCTTTGGTCGAAGTCCGAAATGAAAGGAAGTTCCTTTTT GAGTCTTTTTTCTACGTCCGTATGCCCCATACTTATAACAATCTTAATGC CCTTTTCGGATCGATTTCTACCCGCGGTTTTGGGCCGCCTCCAGGGAGCT GCTGCGGCGGCGGCGGCATCGCCCGTGCACAGGCGGCCAGGATCGCGCGG CAGCGGCGGGGGCACGGCGGCGTCGCGGCGCGTGGCAGACATGCTGTCGT CTGGATCGGCGTTGATGCCGCCGGAGCAGTTTTACACGCTGACTGTGCCG GTCACGTGCCCCGACGACATCGACCCCCGCGATGTGAGTCGAGCAGCATG GTTTTCGCTTCCTTCTTAATTTCTTTCCGTTGCAACGACATTTTTGTAGC TTTAGATAGAAACATGTAATATTGTATACATTGATTGAGGCTTGCGGACG CGCCGGAAAGAAGGTGCAAAAAGCCATGATCGAATGAAAGCGGTTTGTTT GGCGGCGGTTCTGTGAAAGCGAAAGCTCCCTTCTTTTCCCGTGCTTTGCG GCTGGCTTTGCAGGTGGAGAACCCGTTTGCGCTGCCGTCGGACTACGCGA CGGTGCTGCGGGAGCGGGAGGCGGCCATGCTGGAGCTGCAGGCGGCCATC GACGCGGGGTCGCTGCCACTGCAGCAGCAGCGCGACGTCGAGGAGATGGT GCGGGACAAGTTCACCGAGTGGCTCGTTACCACTGGAAACTTGCGCCAGG TCCTCGACCTCGTCAACCTGGAGAAGGCGGCAAACCACCATCCGGCGGCG GCGGCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig13488:86..1641+

>mRNA_P-wetherbeei_contig13488.1.3 ID=mRNA_P-wetherbeei_contig13488.1.3|Name=mRNA_P-wetherbeei_contig13488.1.3|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=837bp|location=Sequence derived from alignment at P-wetherbeei_contig13488:86..1641+ (Phaeothamnion wetherbeei SAG_119_79)
CGCGACCTGCAAATCAACCACTGTCACGAGGCGTATCTGTACGTGCTCGC
GCCGGTGCGTTTTGCGACGGTGATGGGGTGCTCCGACTGCACCATCGTGG
TGGGCGCCGTGGCGGGCGTGGTGCGGGTCATCGAGTGCGAGCGCATCCAG
CTGGTGACGTGCTGCCGGCGCATCAGTGTCGGCAACTGCCTGGACTGTGT
CTTCTCTGTGTTTTGCGCCTCCAACCCCGTGCTCAGCGGCGATAACCGCA
CCTGCCAGTTCGCACCCTACAACACGTGCTACCCGCGGCTGACGCAGCAC
CTCCGGGCAGCAGGTCTGCCGACGTCAAGCCCTCCGGCCGTTAACCTATG
GAACAGCCCTGTCGATGTCTCCACGATGGGCATGCCATCGTTCCATGTCT
CGCAGGGAGCTGCTGCGGCGGCGGCGGCATCGCCCGTGCACAGGCGGCCA
GGATCGCGCGGCAGCGGCGGGGGCACGGCGGCGTCGCGGCGCGTGGCAGA
CATGCTGTCGTCTGGATCGGCGTTGATGCCGCCGGAGCAGTTTTACACGC
TGACTGTGCCGGTCACGTGCCCCGACGACATCGACCCCCGCGATGTGGAG
AACCCGTTTGCGCTGCCGTCGGACTACGCGACGGTGCTGCGGGAGCGGGA
GGCGGCCATGCTGGAGCTGCAGGCGGCCATCGACGCGGGGTCGCTGCCAC
TGCAGCAGCAGCGCGACGTCGAGGAGATGGTGCGGGACAAGTTCACCGAG
TGGCTCGTTACCACTGGAAACTTGCGCCAGGTCCTCGACCTCGTCAACCT
GGAGAAGGCGGCAAACCACCATCCGGCGGCGGCGGCG
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