mRNA_P-wetherbeei_contig13471.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig13471.1.1
Unique NamemRNA_P-wetherbeei_contig13471.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig13471.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig13471contigP-wetherbeei_contig13471:247..1823 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1577
Hectar predicted targeting categoryother localisation
Exons1
Cds size1398
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185986.8881192-CDS-P-wetherbeei_contig13471:246..16441683185986.8881192-CDS-P-wetherbeei_contig13471:246..1644Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13471 247..1644 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185986.8983283-UTR-P-wetherbeei_contig13471:1644..18231683185986.8983283-UTR-P-wetherbeei_contig13471:1644..1823Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig13471 1645..1823 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig13471.1.1prot_P-wetherbeei_contig13471.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig13471 247..1644 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig13471.1.1

>prot_P-wetherbeei_contig13471.1.1 ID=prot_P-wetherbeei_contig13471.1.1|Name=mRNA_P-wetherbeei_contig13471.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=466bp
MERDWGWEDAWLPDGPRGGWPTEVPGPNYGEQSFRNQPQFNDQYKNRERA
YSNGGCPMHLLPPGRDWPPLPQQQQQRWQQQQRWQDEQRWQQQQQQQHNG
GEQRRRGRSYAKMAEDDRDGAQPRGRRPDARLGERDKSRSRDHGRLDGRN
GGSGSGRYDGRNSVVDCGGESYDGWSSGFRSGDGWSYGFGGGGGDGCPNG
DDCANSGMVRNRRGGSGRYSTFGRGQERKPQAHRGASPPAAAPHLRPNGR
FHAGATAAAGFECPAGGVGHTAPDDGSGDEGSGRGEASDEGSGDEEDWTG
YGGDGSGREGGSGGSGFGGCGFGDGDGVDEGSCDTSAFFRVIVDLQTASA
AETDAASTSATETVAAIADAVASGRELPDRKFNGRVHAVSEIALPAGWER
GLTKGQVRRVFVALQADLNIRFQQAHAAHKAESKQRKAIKRVADAPKKAA
QKVKKAAEKAGQKVTG
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mRNA from alignment at P-wetherbeei_contig13471:247..1823-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig13471.1.1 ID=mRNA_P-wetherbeei_contig13471.1.1|Name=mRNA_P-wetherbeei_contig13471.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1577bp|location=Sequence derived from alignment at P-wetherbeei_contig13471:247..1823- (Phaeothamnion wetherbeei SAG_119_79)
CTCCATCCCAGCTTGTAAGGCCAGGTCCCTCCATCCCAGCTTGCTAGGCC
AGGTCCATCAAGCGACGTATTCATCAAAGTGCCAAAGTGGGGAAGAACCT
TGACGCGTAGAAGAACGAGGCTTTGGTGGAGCCAGAGTGTCGTGCCTTAG
AGGGAATTTGAATTCGGACTGTAGAAACCATGGAAAGAGATTGGGGCTGG
GAGGACGCCTGGCTCCCAGATGGCCCACGAGGCGGCTGGCCTACTGAGGT
TCCTGGGCCCAACTACGGCGAGCAATCGTTCAGAAACCAACCCCAATTTA
ACGACCAATACAAAAACCGCGAGAGGGCTTACTCGAACGGCGGCTGTCCG
ATGCACTTGCTGCCGCCAGGTCGCGACTGGCCGCCGCTGCCGCAGCAGCA
ACAACAGAGGTGGCAGCAGCAACAGCGATGGCAGGACGAGCAGCGGTGGC
AGCAACAGCAACAGCAGCAGCACAACGGAGGCGAGCAGCGCAGACGCGGA
CGGTCTTATGCCAAGATGGCTGAGGACGACAGGGATGGCGCGCAGCCACG
AGGCCGCCGCCCGGATGCCCGCCTCGGCGAACGGGACAAAAGCCGCAGTA
GAGACCATGGTCGACTCGACGGCCGAAACGGCGGCAGTGGCAGCGGAAGA
TATGACGGACGAAATAGCGTCGTTGACTGCGGCGGCGAGAGTTACGACGG
CTGGAGCAGCGGCTTTAGGAGTGGCGACGGCTGGAGCTACGGCTTTGGGG
GCGGCGGTGGGGACGGATGCCCCAACGGCGACGATTGCGCCAATTCTGGC
ATGGTCCGGAACCGCCGCGGCGGCAGCGGCCGCTACTCTACGTTCGGGCG
AGGCCAGGAGCGCAAGCCGCAGGCGCACCGTGGTGCGTCGCCGCCAGCAG
CAGCGCCGCATTTGCGGCCCAACGGCCGCTTCCATGCTGGCGCCACTGCC
GCCGCTGGTTTTGAGTGTCCGGCAGGCGGCGTCGGCCATACCGCTCCCGA
CGACGGCAGCGGCGACGAAGGCAGCGGCCGCGGCGAAGCCAGCGACGAAG
GCAGCGGCGACGAGGAGGACTGGACTGGTTACGGCGGCGACGGCAGTGGC
AGGGAGGGCGGCAGTGGTGGCAGCGGCTTCGGCGGTTGCGGCTTTGGCGA
CGGCGACGGCGTTGACGAGGGCAGCTGCGATACTTCCGCATTTTTCCGCG
TCATTGTGGATTTGCAGACGGCGTCGGCTGCCGAGACGGATGCTGCCAGC
ACCTCTGCCACGGAGACCGTCGCCGCCATCGCAGACGCCGTCGCCTCGGG
CCGAGAGCTGCCGGACCGGAAGTTCAACGGCCGAGTGCATGCGGTTTCCG
AAATCGCCCTTCCTGCGGGATGGGAACGTGGCCTGACGAAAGGCCAGGTG
CGGCGCGTCTTTGTGGCTCTGCAGGCCGATTTGAACATCCGGTTTCAGCA
GGCACATGCCGCGCACAAGGCTGAATCCAAGCAGCGCAAGGCGATCAAAA
GGGTTGCGGACGCCCCCAAGAAGGCTGCCCAAAAGGTCAAAAAGGCCGCA
GAGAAGGCGGGGCAGAAGGTGACCGGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig13471:247..1823-

>mRNA_P-wetherbeei_contig13471.1.1 ID=mRNA_P-wetherbeei_contig13471.1.1|Name=mRNA_P-wetherbeei_contig13471.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1398bp|location=Sequence derived from alignment at P-wetherbeei_contig13471:247..1823- (Phaeothamnion wetherbeei SAG_119_79)
ATGGAAAGAGATTGGGGCTGGGAGGACGCCTGGCTCCCAGATGGCCCACG
AGGCGGCTGGCCTACTGAGGTTCCTGGGCCCAACTACGGCGAGCAATCGT
TCAGAAACCAACCCCAATTTAACGACCAATACAAAAACCGCGAGAGGGCT
TACTCGAACGGCGGCTGTCCGATGCACTTGCTGCCGCCAGGTCGCGACTG
GCCGCCGCTGCCGCAGCAGCAACAACAGAGGTGGCAGCAGCAACAGCGAT
GGCAGGACGAGCAGCGGTGGCAGCAACAGCAACAGCAGCAGCACAACGGA
GGCGAGCAGCGCAGACGCGGACGGTCTTATGCCAAGATGGCTGAGGACGA
CAGGGATGGCGCGCAGCCACGAGGCCGCCGCCCGGATGCCCGCCTCGGCG
AACGGGACAAAAGCCGCAGTAGAGACCATGGTCGACTCGACGGCCGAAAC
GGCGGCAGTGGCAGCGGAAGATATGACGGACGAAATAGCGTCGTTGACTG
CGGCGGCGAGAGTTACGACGGCTGGAGCAGCGGCTTTAGGAGTGGCGACG
GCTGGAGCTACGGCTTTGGGGGCGGCGGTGGGGACGGATGCCCCAACGGC
GACGATTGCGCCAATTCTGGCATGGTCCGGAACCGCCGCGGCGGCAGCGG
CCGCTACTCTACGTTCGGGCGAGGCCAGGAGCGCAAGCCGCAGGCGCACC
GTGGTGCGTCGCCGCCAGCAGCAGCGCCGCATTTGCGGCCCAACGGCCGC
TTCCATGCTGGCGCCACTGCCGCCGCTGGTTTTGAGTGTCCGGCAGGCGG
CGTCGGCCATACCGCTCCCGACGACGGCAGCGGCGACGAAGGCAGCGGCC
GCGGCGAAGCCAGCGACGAAGGCAGCGGCGACGAGGAGGACTGGACTGGT
TACGGCGGCGACGGCAGTGGCAGGGAGGGCGGCAGTGGTGGCAGCGGCTT
CGGCGGTTGCGGCTTTGGCGACGGCGACGGCGTTGACGAGGGCAGCTGCG
ATACTTCCGCATTTTTCCGCGTCATTGTGGATTTGCAGACGGCGTCGGCT
GCCGAGACGGATGCTGCCAGCACCTCTGCCACGGAGACCGTCGCCGCCAT
CGCAGACGCCGTCGCCTCGGGCCGAGAGCTGCCGGACCGGAAGTTCAACG
GCCGAGTGCATGCGGTTTCCGAAATCGCCCTTCCTGCGGGATGGGAACGT
GGCCTGACGAAAGGCCAGGTGCGGCGCGTCTTTGTGGCTCTGCAGGCCGA
TTTGAACATCCGGTTTCAGCAGGCACATGCCGCGCACAAGGCTGAATCCA
AGCAGCGCAAGGCGATCAAAAGGGTTGCGGACGCCCCCAAGAAGGCTGCC
CAAAAGGTCAAAAAGGCCGCAGAGAAGGCGGGGCAGAAGGTGACCGGA
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