mRNA_P-wetherbeei_contig1347.4.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1347.4.1
Unique NamemRNA_P-wetherbeei_contig1347.4.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig1347.4.1 vs. uniprot
Match: A0A835ZKB1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZKB1_9STRA)

HSP 1 Score: 144 bits (364), Expect = 1.360e-37
Identity = 81/133 (60.90%), Postives = 96/133 (72.18%), Query Frame = 1 
Query:    1 RDVYSRTFGGLQAYGATGATVLEELVDAAFQACGVAHSQREAT-----GAAVLTEGNRVYAGCSVESRHRPELSVAAERTAVLKAVSEGETRFRALVLASDCGGEDFPVPDGASRQFLAEYGNSPVCLVNQHL 384
            RD Y R FGG+QAYG TG TVLEEL++AAF AC  A +   AT     GAAVLT G RVYA C VES    EL V+AERTA+LKAVS+G++ FRAL +AS  G   FP+P+G SRQFLAE+G+ PV LVN+ L
Sbjct:  643 RDAYGRAFGGMQAYGETGMTVLEELIEAAFGACDAAAAHGLATAAAPRGAAVLTRGGRVYAACGVESATSTELCVSAERTALLKAVSDGQSAFRALAIASAAGAA-FPMPEGGSRQFLAEFGDFPVYLVNRDL 774
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BLAST of mRNA_P-wetherbeei_contig1347.4.1 vs. uniprot
Match: D8LEH4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEH4_ECTSI)

HSP 1 Score: 140 bits (354), Expect = 3.120e-36
Identity = 75/130 (57.69%), Postives = 98/130 (75.38%), Query Frame = 1 
Query:    1 RDVYSRTFGGLQAYGATGATVLEELVDAAFQACGVAHSQ--REATGAAVLTEGNRVYAGCSVESRHRPELSVAAERTAVLKAVSEGETRFRALVLASDCGGEDFPVPDGASRQFLAEYGNSPVCLVNQHL 384
            ++ Y++TF G+QAYG +G TVLEEL+DAAF+AC + H+Q  +  TGAA+LT   +++AGC+VES    +LSV AERT VLKAVSEGETRFR++ +ASD     FP PDG  RQFLAE+G  PV LVN+ +
Sbjct:  175 QETYTKTFTGMQAYGESGMTVLEELIDAAFRACDIGHAQGQQRVTGAALLTRSGKIFAGCNVESSS-VDLSVGAERTTVLKAVSEGETRFRSMAMASDTD-LGFPSPDGPGRQFLAEFGEFPVYLVNRDM 302
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BLAST of mRNA_P-wetherbeei_contig1347.4.1 vs. uniprot
Match: A0A7S4E4K0_9STRA (Hypothetical protein (Fragment) n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4E4K0_9STRA)

HSP 1 Score: 103 bits (258), Expect = 2.650e-23
Identity = 68/145 (46.90%), Postives = 83/145 (57.24%), Query Frame = 1 
Query:    1 RDVYSRTFGGLQAYGATGATVLEELVDAAFQACG-----------VAHSQ------REATGAAVLTEGNRVYAGCSVESRHRPELSVAAERTAVLKAVSEGETRFRALVLASDCGGEDFPVPDGASRQFLAEYGNSPVCLVNQHL 384
            R  Y   F GL AYG TGAT LEELV+AA  A              AH        R  T AA+L    RV+  C+V S     LSV+AER  VL+AV++G+ +F  LV+A D   E+ PVPDGA+RQ LAEYG+ PV LVN+ L
Sbjct:  135 RRDYDARFSGLHAYGPTGATRLEELVEAALAASERAVAAYKAEKRAAHRSSSQIVPRATTCAALLASSGRVHVACAVRSNTDAALSVSAERAVVLRAVADGDRKFIGLVVA-DANSEELPVPDGAARQVLAEYGDFPVYLVNRDL 278
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BLAST of mRNA_P-wetherbeei_contig1347.4.1 vs. uniprot
Match: A0A8J2WEQ4_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WEQ4_9STRA)

HSP 1 Score: 103 bits (258), Expect = 2.700e-23
Identity = 68/145 (46.90%), Postives = 83/145 (57.24%), Query Frame = 1 
Query:    1 RDVYSRTFGGLQAYGATGATVLEELVDAAFQACG-----------VAHSQ------REATGAAVLTEGNRVYAGCSVESRHRPELSVAAERTAVLKAVSEGETRFRALVLASDCGGEDFPVPDGASRQFLAEYGNSPVCLVNQHL 384
            R  Y   F GL AYG TGAT LEELV+AA  A              AH        R  T AA+L    RV+  C+V S     LSV+AER  VL+AV++G+ +F  LV+A D   E+ PVPDGA+RQ LAEYG+ PV LVN+ L
Sbjct:  135 RRDYDARFSGLHAYGPTGATRLEELVEAALAASERAVAAYKAEKRAAHRSSSQIVPRATTCAALLASSGRVHVACAVRSNTDAALSVSAERAVVLRAVADGDRKFIGLVVA-DANSEELPVPDGAARQVLAEYGDFPVYLVNRDL 278
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BLAST of mRNA_P-wetherbeei_contig1347.4.1 vs. uniprot
Match: A0A2R5GDF6_9STRA (Cytidine deaminase n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GDF6_9STRA)

HSP 1 Score: 84.3 bits (207), Expect = 2.020e-16
Identity = 51/106 (48.11%), Postives = 68/106 (64.15%), Query Frame = 1 
Query:   64 LEELVDAAFQAC--GVAHSQREATGAAVLTEGNRVYAGCSVESRHRPELSVAAERTAVLKAVSEGETRFRALVLASD-CGGEDFPVPDGASRQFLAEYGNSPVCLV 372
            L++L+D A  AC  GVA       GAA+LT G  VY+GC++ES +   LS +AE+ A+LKA+S GE  F  +VL  D      FP+P GASRQ+LAE+G+  V LV
Sbjct:  121 LDDLIDIAVNACKNGVAPLTGVRYGAALLTRGGFVYSGCNIES-NETTLSTSAEKMAILKAISAGENEFECMVLTWDQTENPRFPMPSGASRQYLAEFGDFEVVLV 225
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BLAST of mRNA_P-wetherbeei_contig1347.4.1 vs. uniprot
Match: A0A6H5JBA5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBA5_9PHAE)

HSP 1 Score: 83.6 bits (205), Expect = 3.780e-16
Identity = 46/74 (62.16%), Postives = 55/74 (74.32%), Query Frame = 1 
Query:  163 YAGCSVESRHRPELSVAAERTAVLKAVSEGETRFRALVLASDCGGEDFPVPDGASRQFLAEYGNSPVCLVNQHL 384
            +AGC+VES    +LSV AERT VLKAVSEGETRFR++ +ASD     FP PDG  RQFLAE+G  PV LVN+ +
Sbjct:  137 FAGCNVESSS-VDLSVGAERTTVLKAVSEGETRFRSMAMASDTD-LGFPSPDGPGRQFLAEFGEFPVYLVNRDM 208
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BLAST of mRNA_P-wetherbeei_contig1347.4.1 vs. uniprot
Match: A0A2L2XBR6_9FIRM (Cytidine deaminase n=1 Tax=Desulfocucumis palustris TaxID=1898651 RepID=A0A2L2XBR6_9FIRM)

HSP 1 Score: 76.3 bits (186), Expect = 3.370e-15
Identity = 47/99 (47.47%), Postives = 65/99 (65.66%), Query Frame = 1 
Query:   61 VLEELVDAAFQACGVAHSQREA--TGAAVLTEGNRVYAGCSVESRHRPELSVAAERTAVLKAVSEGETRFRALVLASDCGGEDFPVPDGASRQFLAEYG 351
            +++EL++ A  A   A++       GAA+LTEG +VY GC+VE+     L+  AER AV KAVSEG+T+F+A+ + SD   EDF  P GA RQ LAE+G
Sbjct:    1 MIQELINTAVAAREKAYAPYSGFRVGAALLTEGGKVYNGCNVENASYG-LTCCAERAAVFKAVSEGDTKFKAIAVISDT--EDFCTPCGACRQVLAEFG 96
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BLAST of mRNA_P-wetherbeei_contig1347.4.1 vs. uniprot
Match: M2XY11_GALSU (Cytidine deaminase n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2XY11_GALSU)

HSP 1 Score: 75.9 bits (185), Expect = 6.170e-15
Identity = 40/81 (49.38%), Postives = 57/81 (70.37%), Query Frame = 1 
Query:  130 GAAVLTEGNRVYAGCSVESRHRPELSVAAERTAVLKAVSEGETRFRALVLASDCGGEDFPVPDGASRQFLAEYGNSPVCLV 372
            GA +  +  ++Y+GC+VE+     LS+ AERTAV+KAVSEG T FRA+ +++D  GE +P   GA RQFL+E+GN PV  +
Sbjct:   38 GACICAQSGQLYSGCNVENASYG-LSICAERTAVVKAVSEGNTCFRAIAISTDTTGEVWPC--GACRQFLSEFGNFPVIFI 115
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BLAST of mRNA_P-wetherbeei_contig1347.4.1 vs. uniprot
Match: A0A7L1U4T3_PHANI (Cytidine deaminase (Fragment) n=12 Tax=Neognathae TaxID=8825 RepID=A0A7L1U4T3_PHANI)

HSP 1 Score: 75.5 bits (184), Expect = 9.120e-15
Identity = 41/85 (48.24%), Postives = 55/85 (64.71%), Query Frame = 1 
Query:   97 CGVAHSQREATGAAVLTEGNRVYAGCSVESRHRPELSVAAERTAVLKAVSEGETRFRALVLASDCGGEDFPVPDGASRQFLAEYG 351
            C      R   GAA+LT G  +++GC+VE+     L V AERTA+LKA+SEG T F+A+ +ASD G +DF  P GA RQ + E+G
Sbjct:   33 CAYCPYSRFPVGAALLTAGGEIFSGCNVENACY-SLGVCAERTAILKAISEGHTSFKAMAIASDIG-DDFITPCGACRQVMREFG 115
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BLAST of mRNA_P-wetherbeei_contig1347.4.1 vs. uniprot
Match: A0A2I0M315_COLLI (Cytidine deaminase n=1 Tax=Columba livia TaxID=8932 RepID=A0A2I0M315_COLLI)

HSP 1 Score: 75.9 bits (185), Expect = 1.650e-14
Identity = 40/74 (54.05%), Postives = 54/74 (72.97%), Query Frame = 1 
Query:  130 GAAVLTEGNRVYAGCSVESRHRPELSVAAERTAVLKAVSEGETRFRALVLASDCGGEDFPVPDGASRQFLAEYG 351
            GAA+LT G  +++GC+VE+     L V AERTA+LKA+SEG T FRA+ +ASD G ++F VP GA RQ + E+G
Sbjct:   87 GAALLTAGGEIFSGCNVENACY-SLGVCAERTAILKAISEGHTSFRAMAIASDMG-DNFIVPCGACRQMMREFG 158
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1347.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZKB1_9STRA1.360e-3760.90Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D8LEH4_ECTSI3.120e-3657.69Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S4E4K0_9STRA2.650e-2346.90Hypothetical protein (Fragment) n=2 Tax=Pelagomona... [more]
A0A8J2WEQ4_9STRA2.700e-2346.90Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A2R5GDF6_9STRA2.020e-1648.11Cytidine deaminase n=1 Tax=Hondaea fermentalgiana ... [more]
A0A6H5JBA5_9PHAE3.780e-1662.16Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A2L2XBR6_9FIRM3.370e-1547.47Cytidine deaminase n=1 Tax=Desulfocucumis palustri... [more]
M2XY11_GALSU6.170e-1549.38Cytidine deaminase n=1 Tax=Galdieria sulphuraria T... [more]
A0A7L1U4T3_PHANI9.120e-1548.24Cytidine deaminase (Fragment) n=12 Tax=Neognathae ... [more]
A0A2I0M315_COLLI1.650e-1454.05Cytidine deaminase n=1 Tax=Columba livia TaxID=893... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1347contigP-wetherbeei_contig1347:6432..7340 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LEH4
Preferred nameCDA
PFAMsdCMP_cyt_deam_1
Model size384
Max annot lvl2759|Eukaryota
KEGG rclassRC00074,RC00514
KEGG koko:K01489
KEGG ReactionR01878,R02485,R08221
KEGG Pathwayko00240,ko00983,ko01100,map00240,map00983,map01100
Hectar predicted targeting categoryother localisation
GOsGO:0001558,GO:0001775,GO:0001882,GO:0002252,GO:0002263,GO:0002274,GO:0002275,GO:0002283,GO:0002366,GO:0002376,GO:0002443,GO:0002444,GO:0002446,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0004126,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006139,GO:0006140,GO:0006206,GO:0006213,GO:0006216,GO:0006217,GO:0006725,GO:0006807,GO:0006810,GO:0006887,GO:0006955,GO:0007154,GO:0007165,GO:0007166,GO:0007275,GO:0008150,GO:0008152,GO:0008270,GO:0008655,GO:0009056,GO:0009058,GO:0009112,GO:0009116,GO:0009119,GO:0009120,GO:0009163,GO:0009164,GO:0009451,GO:0009790,GO:0009792,GO:0009892,GO:0009972,GO:0009987,GO:0010563,GO:0012505,GO:0016043,GO:0016070,GO:0016192,GO:0016787,GO:0016810,GO:0016814,GO:0018130,GO:0019219,GO:0019220,GO:0019222,GO:0019239,GO:0019438,GO:0019439,GO:0019858,GO:0022607,GO:0023052,GO:0030141,GO:0030308,GO:0031323,GO:0031324,GO:0031410,GO:0031974,GO:0031982,GO:0031983,GO:0032501,GO:0032502,GO:0032940,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0034656,GO:0034774,GO:0036094,GO:0036230,GO:0040008,GO:0042119,GO:0042454,GO:0042455,GO:0042802,GO:0042803,GO:0043094,GO:0043097,GO:0043167,GO:0043169,GO:0043170,GO:0043174,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043299,GO:0043312,GO:0043412,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044282,GO:0044283,GO:0044422,GO:0044424,GO:0044433,GO:0044444,GO:0044446,GO:0044464,GO:0045055,GO:0045321,GO:0045926,GO:0045934,GO:0045936,GO:0045980,GO:0046087,GO:0046092,GO:0046108,GO:0046109,GO:0046121,GO:0046125,GO:0046127,GO:0046131,GO:0046132,GO:0046133,GO:0046134,GO:0046135,GO:0046483,GO:0046700,GO:0046872,GO:0046903,GO:0046914,GO:0046983,GO:0047844,GO:0048519,GO:0048523,GO:0048856,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051171,GO:0051172,GO:0051174,GO:0051179,GO:0051234,GO:0051259,GO:0051260,GO:0051262,GO:0051289,GO:0051716,GO:0055086,GO:0060205,GO:0062012,GO:0062014,GO:0065003,GO:0065007,GO:0070013,GO:0070820,GO:0071704,GO:0071840,GO:0072527,GO:0072528,GO:0072529,GO:0080090,GO:0090304,GO:0097159,GO:0097367,GO:0097708,GO:0099503,GO:0101002,GO:1901135,GO:1901136,GO:1901137,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576,GO:1901657,GO:1901658,GO:1901659,GO:1904724,GO:1904813
Exons2
Evalue5.12e-37
EggNOG OGsCOG0295@1|root,KOG0833@2759|Eukaryota
Ec32 ortholog descriptionCytidine deaminase SAM EF-hand Tudor and KOW domain protein
Ec32 orthologEc-21_004670.1
EC3.5.4.5
Descriptioncytidine deaminase activity
Cds size384
COG categoryF
BRITEko00000,ko00001,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185986.833542-CDS-P-wetherbeei_contig1347:6431..65481683185986.833542-CDS-P-wetherbeei_contig1347:6431..6548Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1347 6432..6548 +
1683185986.8492684-CDS-P-wetherbeei_contig1347:7073..73401683185986.8492684-CDS-P-wetherbeei_contig1347:7073..7340Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1347 7074..7340 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1347.4.1prot_P-wetherbeei_contig1347.4.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1347 6432..7340 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1347.4.1

>prot_P-wetherbeei_contig1347.4.1 ID=prot_P-wetherbeei_contig1347.4.1|Name=mRNA_P-wetherbeei_contig1347.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=128bp
RDVYSRTFGGLQAYGATGATVLEELVDAAFQACGVAHSQREATGAAVLTE
GNRVYAGCSVESRHRPELSVAAERTAVLKAVSEGETRFRALVLASDCGGE
DFPVPDGASRQFLAEYGNSPVCLVNQHL
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mRNA from alignment at P-wetherbeei_contig1347:6432..7340+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1347.4.1 ID=mRNA_P-wetherbeei_contig1347.4.1|Name=mRNA_P-wetherbeei_contig1347.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=909bp|location=Sequence derived from alignment at P-wetherbeei_contig1347:6432..7340+ (Phaeothamnion wetherbeei SAG_119_79)
CGCGACGTCTACTCCCGCACTTTTGGCGGGCTGCAGGCTTACGGCGCGAC
GGGGGCGACGGTGCTGGAGGAGCTCGTTGATGCCGCTTTTCAGGCCTGCG
GGGTCGCCCACTCGCAGGTAATTGATTGCTGCTGGTTTGACTCCCCTTCT
GGCCCCTTCTTTACGCGAGCAATAACGGGTAATTGTTGACCGCGTTGAGC
GGAAATATCTTACATCTTGCAGCTATGTTGGTGCCATGTCTGATCCCGAT
TCTGTCCATGTCTTTTGAGGCTTGGAAATGGCCAGTTCTCAGTCGGAAGT
CATATCTCTATCGGAGAATTTTCAACCTTTCTTCGAAAATGTTGGGTTAC
CTCGTTGTGAATGTTAGGGCACGCGGCCGGCAGGTCGGTCCGCTTGGCAA
CTTGCGTTGGTATCGCTTTCGTTTTGCGAGTACGCGCTGAAGCGACGAAC
CTACGGCTGCAACGATCGTAGCGGCGGTGGGCGGCGGCGGCAGCAGCTGG
TTAGGAGAGAAATGTCTTCTCAGTTCCACCACTCTTAAGCTACAATTTTC
ATTTCTTTCCTCTCGTTGCCATCCCTGCGACCGGCTGCGGTCCTCCCGTA
CCCGCCCACCGATCGCCGGCCCTCATTCGTTCGCAGGGCCAGCGGGAGGC
GACTGGCGCGGCGGTGCTGACGGAGGGCAACCGCGTCTACGCCGGCTGCA
GCGTCGAGAGCCGTCATCGCCCCGAGCTGAGCGTCGCCGCCGAGCGCACC
GCCGTCCTCAAGGCCGTCAGCGAGGGCGAGACGCGCTTCCGGGCGCTGGT
GCTGGCGAGCGACTGCGGCGGGGAGGACTTCCCTGTGCCGGATGGTGCAT
CACGGCAGTTCCTGGCGGAGTACGGCAACTCCCCCGTCTGCCTCGTCAAC
CAACACCTG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1347:6432..7340+

>mRNA_P-wetherbeei_contig1347.4.1 ID=mRNA_P-wetherbeei_contig1347.4.1|Name=mRNA_P-wetherbeei_contig1347.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=384bp|location=Sequence derived from alignment at P-wetherbeei_contig1347:6432..7340+ (Phaeothamnion wetherbeei SAG_119_79)
CGCGACGTCTACTCCCGCACTTTTGGCGGGCTGCAGGCTTACGGCGCGAC
GGGGGCGACGGTGCTGGAGGAGCTCGTTGATGCCGCTTTTCAGGCCTGCG
GGGTCGCCCACTCGCAGCGGGAGGCGACTGGCGCGGCGGTGCTGACGGAG
GGCAACCGCGTCTACGCCGGCTGCAGCGTCGAGAGCCGTCATCGCCCCGA
GCTGAGCGTCGCCGCCGAGCGCACCGCCGTCCTCAAGGCCGTCAGCGAGG
GCGAGACGCGCTTCCGGGCGCTGGTGCTGGCGAGCGACTGCGGCGGGGAG
GACTTCCCTGTGCCGGATGGTGCATCACGGCAGTTCCTGGCGGAGTACGG
CAACTCCCCCGTCTGCCTCGTCAACCAACACCTG
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