mRNA_P-wetherbeei_contig13465.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig13465.1.1
Unique NamemRNA_P-wetherbeei_contig13465.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig13465.1.1 vs. uniprot
Match: A0A3B1C526_9ZZZZ (HTH marR-type domain-containing protein (Fragment) n=1 Tax=hydrothermal vent metagenome TaxID=652676 RepID=A0A3B1C526_9ZZZZ)

HSP 1 Score: 147 bits (371), Expect = 1.900e-43
Identity = 68/116 (58.62%), Postives = 94/116 (81.03%), Query Frame = 1
Query:    1 MPTHYQGSDEEVSSLNAYIKLMRAANAVERRLTPTISASGLTFSQFGVLEALHHIGPLCQRDLSEKLLLSGGNITMVVNNLEKQGLVVRLRTGNDKRYSTVHLTWRGTQMIKEIFP 348
            M TH++GS++EV +LN +IKL+RA+ ++  R  P ++A+GLT SQF  LEAL+H+GPLCQ++L +K+L SGGN+TMVVNNLEK  LV RLR  ND+RY TVH+T +GT +IK++FP
Sbjct:    1 MGTHHKGSEKEVRALNTFIKLVRASESLVSRSLPILTAAGLTLSQFDALEALYHLGPLCQKELGQKMLKSGGNVTMVVNNLEKNELVKRLRRDNDRRYITVHITRKGTNIIKKLFP 116          
BLAST of mRNA_P-wetherbeei_contig13465.1.1 vs. uniprot
Match: A0A3M1WGM4_9BACT (MarR family transcriptional regulator n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A3M1WGM4_9BACT)

HSP 1 Score: 148 bits (373), Expect = 2.610e-43
Identity = 72/124 (58.06%), Postives = 96/124 (77.42%), Query Frame = 1
Query:    1 MPTHYQGSDEEVSSLNAYIKLMRAANAVERRLTPTISASGLTFSQFGVLEALHHIGPLCQRDLSEKLLLSGGNITMVVNNLEKQGLVVRLRTGNDKRYSTVHLTWRGTQMIKEIFPKHLKEVVK 372
            M THY+G+DEEV +LN YIKLMRAA +V  RL P I++ GLT SQFGVLEAL+H+GPLCQ +L++KLL S GNIT+V++NLEK+G V R R   D+R   V+LT  G ++I++IFP H+  +V+
Sbjct:    1 MGTHYKGTDEEVRALNTYIKLMRAAESVTARLNPRIASYGLTLSQFGVLEALYHLGPLCQHELAKKLLKSSGNITLVIDNLEKRGFVRRRRERTDRRLVRVYLTPGGRRLIRDIFPGHVTAIVQ 124          
BLAST of mRNA_P-wetherbeei_contig13465.1.1 vs. uniprot
Match: A0A3B0QQW7_9ZZZZ (HTH marR-type domain-containing protein n=1 Tax=hydrothermal vent metagenome TaxID=652676 RepID=A0A3B0QQW7_9ZZZZ)

HSP 1 Score: 147 bits (372), Expect = 6.210e-43
Identity = 72/124 (58.06%), Postives = 96/124 (77.42%), Query Frame = 1
Query:    1 MPTHYQGSDEEVSSLNAYIKLMRAANAVERRLTPTISASGLTFSQFGVLEALHHIGPLCQRDLSEKLLLSGGNITMVVNNLEKQGLVVRLRTGNDKRYSTVHLTWRGTQMIKEIFPKHLKEVVK 372
            M THY+GS +E  +LNAY+ LMRAA +V  R T +++ +GLT SQFGVLEA++H+GPLCQR L+EK+L S GNI +VV+NLE+Q LVVR R   D+RY TVHLT +G  ++ E+FPK LK +V+
Sbjct:    1 MGTHYKGSRKEKQALNAYVALMRAAESVTSRTTGSMTEAGLTLSQFGVLEAIYHLGPLCQRALAEKILKSTGNIVVVVDNLERQSLVVRRRDKKDRRYVTVHLTDKGRWLVGEVFPKVLKSIVR 124          
BLAST of mRNA_P-wetherbeei_contig13465.1.1 vs. uniprot
Match: A0A2N1UUF9_9BACT (MarR family transcriptional regulator n=1 Tax=Candidatus Melainabacteria bacterium HGW-Melainabacteria-1 TaxID=2013813 RepID=A0A2N1UUF9_9BACT)

HSP 1 Score: 147 bits (371), Expect = 8.550e-43
Identity = 71/128 (55.47%), Postives = 97/128 (75.78%), Query Frame = 1
Query:    1 MPTHYQGSDEEVSSLNAYIKLMRAANAVERRLTPTISASGLTFSQFGVLEALHHIGPLCQRDLSEKLLLSGGNITMVVNNLEKQGLVVRLRTGNDKRYSTVHLTWRGTQMIKEIFPKHLKEVVKVFTV 384
            M THYQG+ E+  +LNAYI  +RAA ++  ++  ++SA GLT SQFGVLEA+ H+GPLCQR L+EKLL SGGNIT+V++NLEKQ LV R R   D+RY TV LT RG  +I+ IFP+H++ + ++ +V
Sbjct:    1 MGTHYQGTPEQEQALNAYINFIRAAESLSAQIHQSLSAKGLTESQFGVLEAIFHLGPLCQRALAEKLLKSGGNITLVIDNLEKQQLVERRRNPEDRRYITVSLTQRGQDLIETIFPEHVERITRLLSV 128          
BLAST of mRNA_P-wetherbeei_contig13465.1.1 vs. uniprot
Match: A0A7X6I967_9BACT (MarR family transcriptional regulator n=1 Tax=Candidatus Manganitrophus noduliformans TaxID=2606439 RepID=A0A7X6I967_9BACT)

HSP 1 Score: 147 bits (372), Expect = 1.270e-42
Identity = 72/124 (58.06%), Postives = 99/124 (79.84%), Query Frame = 1
Query:    1 MPTHYQGSDEEVSSLNAYIKLMRAANAVERRLTPTISASGLTFSQFGVLEALHHIGPLCQRDLSEKLLLSGGNITMVVNNLEKQGLVVRLRTGNDKRYSTVHLTWRGTQMIKEIFPKHLKEVVK 372
            M THY+G+ EEV++L+ +IKLMRAA+++  RL+P ++++GLT  QFG LE L H+GPLCQ +L  KLL SGGNITMVV+NLE+ GLV R R G D+R+ T+HLT  G Q+I++IFPKHL+ +V+
Sbjct:    1 MGTHYRGTREEVTALDTFIKLMRAADSLSSRLSPILASTGLTSGQFGALEVLLHLGPLCQSELGRKLLRSGGNITMVVDNLERSGLVRRER-GEDRRFITLHLTKEGRQLIQKIFPKHLEALVR 123          
BLAST of mRNA_P-wetherbeei_contig13465.1.1 vs. uniprot
Match: UPI0019C25E53 (Winged helix-turn-helix transcriptional regulator n=1 Tax=Gloeobacterales cyanobacterium ES-bin-141 TaxID=2812628 RepID=UPI0019C25E53)

HSP 1 Score: 146 bits (368), Expect = 1.500e-42
Identity = 72/128 (56.25%), Postives = 98/128 (76.56%), Query Frame = 1
Query:    1 MPTHYQGSDEEVSSLNAYIKLMRAANAVERRLTPTISASGLTFSQFGVLEALHHIGPLCQRDLSEKLLLSGGNITMVVNNLEKQGLVVRLRTGNDKRYSTVHLTWRGTQMIKEIFPKHLKEVVKVFTV 384
            M T YQG+ EEV +L+ YIKL+RA ++V  R+   ++A+GL+ SQFGVLEAL H+GPLCQRDL++KLL SGGNITMVV+NLEK+ LV R RT  D+R+  +HLT  G +MI ++FP H++ V++   V
Sbjct:    1 MGTRYQGTPEEVLALDTYIKLVRATSSVTARIHRHLTAAGLSASQFGVLEALLHLGPLCQRDLAQKLLTSGGNITMVVDNLEKRDLVRRERTTEDRRFICIHLTETGQEMISQLFPHHVEAVIETMAV 128          
BLAST of mRNA_P-wetherbeei_contig13465.1.1 vs. uniprot
Match: A0A3B0VFK1_9ZZZZ (HTH marR-type domain-containing protein n=1 Tax=hydrothermal vent metagenome TaxID=652676 RepID=A0A3B0VFK1_9ZZZZ)

HSP 1 Score: 145 bits (367), Expect = 3.570e-42
Identity = 71/124 (57.26%), Postives = 95/124 (76.61%), Query Frame = 1
Query:    1 MPTHYQGSDEEVSSLNAYIKLMRAANAVERRLTPTISASGLTFSQFGVLEALHHIGPLCQRDLSEKLLLSGGNITMVVNNLEKQGLVVRLRTGNDKRYSTVHLTWRGTQMIKEIFPKHLKEVVK 372
            M TH++GS  E  +LNAY+ LMRAA +V  R T +++ +GLT SQFGVLEA++H+GPLCQR L+EK+L S GNI +VV+NLE+QGLVVR R   D+RY  VHLT +G  ++ E+FPK LK +V+
Sbjct:    1 MGTHHKGSRREKQALNAYVALMRAAESVTSRTTGSMTDAGLTLSQFGVLEAIYHLGPLCQRALAEKILKSTGNIVVVVDNLERQGLVVRRRDRKDRRYVIVHLTGKGRGLVGEVFPKVLKSIVR 124          
BLAST of mRNA_P-wetherbeei_contig13465.1.1 vs. uniprot
Match: A0A7V3QWZ5_9BACT (MarR family transcriptional regulator n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A7V3QWZ5_9BACT)

HSP 1 Score: 145 bits (365), Expect = 5.810e-42
Identity = 70/128 (54.69%), Postives = 96/128 (75.00%), Query Frame = 1
Query:    1 MPTHYQGSDEEVSSLNAYIKLMRAANAVERRLTPTISASGLTFSQFGVLEALHHIGPLCQRDLSEKLLLSGGNITMVVNNLEKQGLVVRLRTGNDKRYSTVHLTWRGTQMIKEIFPKHLKEVVKVFTV 384
            M THY+G++EE  +LNA+I LMRA  ++  RL+  ++  GLT +QFG LEAL H+GPLCQR+L  KLL SGGNIT+VV+NLEKQGL+ R R G+D+RY TV+LT  G ++I+ +F +HL  +V+   V
Sbjct:    1 MGTHYEGTEEEKRALNAFITLMRAGESLSARLSRDLAGKGLTMTQFGALEALLHLGPLCQRELGSKLLRSGGNITLVVDNLEKQGLIRRDRDGSDRRYVTVNLTREGRRLIERVFREHLALIVEAMAV 128          
BLAST of mRNA_P-wetherbeei_contig13465.1.1 vs. uniprot
Match: UPI001B13B8F9 (MarR family transcriptional regulator n=1 Tax=bacterium TaxID=1869227 RepID=UPI001B13B8F9)

HSP 1 Score: 144 bits (364), Expect = 5.900e-42
Identity = 69/126 (54.76%), Postives = 94/126 (74.60%), Query Frame = 1
Query:    1 MPTHYQGSDEEVSSLNAYIKLMRAANAVERRLTPTISASGLTFSQFGVLEALHHIGPLCQRDLSEKLLLSGGNITMVVNNLEKQGLVVRLRTGNDKRYSTVHLTWRGTQMIKEIFPKHLKEVVKVF 378
            MPT YQG  EEV +LNAYI LMRAA++VE R+   ++  GLT SQFG LE L H+GP+C RDL +KLL + GNIT+V++NLEK+GLV R+R   D+R  T+HLT  G ++I+ +FP+H+  + +VF
Sbjct:    1 MPTRYQGLPEEVRALNAYIPLMRAASSVEARVQRHLAEVGLTLSQFGALEILLHVGPMCARDLCQKLLTTSGNITLVLDNLEKRGLVRRVRESADRRVVTIHLTPEGEELIRAVFPRHVAGITQVF 126          
BLAST of mRNA_P-wetherbeei_contig13465.1.1 vs. uniprot
Match: A0A3B1BTD2_9ZZZZ (HTH marR-type domain-containing protein n=1 Tax=hydrothermal vent metagenome TaxID=652676 RepID=A0A3B1BTD2_9ZZZZ)

HSP 1 Score: 144 bits (362), Expect = 1.190e-41
Identity = 66/124 (53.23%), Postives = 97/124 (78.23%), Query Frame = 1
Query:    1 MPTHYQGSDEEVSSLNAYIKLMRAANAVERRLTPTISASGLTFSQFGVLEALHHIGPLCQRDLSEKLLLSGGNITMVVNNLEKQGLVVRLRTGNDKRYSTVHLTWRGTQMIKEIFPKHLKEVVK 372
            M T Y+GS +EVS+LN +IKL R   +V   L+PT+S +GLT SQFG++E+++H+GP+CQ++L+ K+L SGGNIT+VV+NL KQG V R+R+  D+RYSTVHLT  G + I  +FPK ++++V+
Sbjct:    1 MGTKYKGSPKEVSALNIFIKLSRCVESVMSELSPTLSKAGLTVSQFGIMESIYHLGPMCQKELASKILKSGGNITLVVDNLAKQGYVKRIRSEQDRRYSTVHLTAAGRRKISALFPKIVEKIVE 124          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig13465.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3B1C526_9ZZZZ1.900e-4358.62HTH marR-type domain-containing protein (Fragment)... [more]
A0A3M1WGM4_9BACT2.610e-4358.06MarR family transcriptional regulator n=1 Tax=Acid... [more]
A0A3B0QQW7_9ZZZZ6.210e-4358.06HTH marR-type domain-containing protein n=1 Tax=hy... [more]
A0A2N1UUF9_9BACT8.550e-4355.47MarR family transcriptional regulator n=1 Tax=Cand... [more]
A0A7X6I967_9BACT1.270e-4258.06MarR family transcriptional regulator n=1 Tax=Cand... [more]
UPI0019C25E531.500e-4256.25Winged helix-turn-helix transcriptional regulator ... [more]
A0A3B0VFK1_9ZZZZ3.570e-4257.26HTH marR-type domain-containing protein n=1 Tax=hy... [more]
A0A7V3QWZ5_9BACT5.810e-4254.69MarR family transcriptional regulator n=1 Tax=Acid... [more]
UPI001B13B8F95.900e-4254.76MarR family transcriptional regulator n=1 Tax=bact... [more]
A0A3B1BTD2_9ZZZZ1.190e-4153.23HTH marR-type domain-containing protein n=1 Tax=hy... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig13465contigP-wetherbeei_contig13465:2..385 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog1183438.GKIL_2897
PFAMsMarR
Model size384
Max annot lvl1117|Cyanobacteria
KEGG koko:K15973
Hectar predicted targeting categoryother localisation
Exons1
Evalue8.85e-38
EggNOG OGsCOG1846@1|root,COG1846@2|Bacteria,1G6XI@1117|Cyanobacteria
DescriptionMarR family transcriptional
Cds size384
COG categoryK
BRITEko00000,ko03000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185986.5991504-CDS-P-wetherbeei_contig13465:1..3851683185986.5991504-CDS-P-wetherbeei_contig13465:1..385Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13465 2..385 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig13465.1.1prot_P-wetherbeei_contig13465.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig13465 2..385 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig13465.1.1

>prot_P-wetherbeei_contig13465.1.1 ID=prot_P-wetherbeei_contig13465.1.1|Name=mRNA_P-wetherbeei_contig13465.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=128bp
MPTHYQGSDEEVSSLNAYIKLMRAANAVERRLTPTISASGLTFSQFGVLE
ALHHIGPLCQRDLSEKLLLSGGNITMVVNNLEKQGLVVRLRTGNDKRYST
VHLTWRGTQMIKEIFPKHLKEVVKVFTV
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mRNA from alignment at P-wetherbeei_contig13465:2..385-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig13465.1.1 ID=mRNA_P-wetherbeei_contig13465.1.1|Name=mRNA_P-wetherbeei_contig13465.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=384bp|location=Sequence derived from alignment at P-wetherbeei_contig13465:2..385- (Phaeothamnion wetherbeei SAG_119_79)
ATGCCTACTCACTATCAGGGTTCCGACGAGGAAGTTTCCTCCCTTAACGC TTACATCAAGCTGATGCGGGCCGCCAACGCGGTGGAACGCAGATTGACTC CCACGATTTCCGCGAGCGGGCTGACCTTCAGTCAGTTTGGCGTGCTCGAG GCCCTCCATCACATCGGCCCCCTGTGCCAGCGCGATCTCTCCGAGAAGCT TTTGCTGAGCGGCGGCAATATCACGATGGTCGTCAACAATCTTGAAAAAC AGGGGCTGGTCGTGCGCCTGCGCACCGGCAACGACAAACGTTATTCCACG GTTCATCTGACCTGGCGCGGCACGCAGATGATCAAGGAGATCTTCCCCAA ACATCTCAAGGAAGTGGTGAAAGTCTTCACCGTT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig13465:2..385-

>mRNA_P-wetherbeei_contig13465.1.1 ID=mRNA_P-wetherbeei_contig13465.1.1|Name=mRNA_P-wetherbeei_contig13465.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=384bp|location=Sequence derived from alignment at P-wetherbeei_contig13465:2..385- (Phaeothamnion wetherbeei SAG_119_79)
ATGCCTACTCACTATCAGGGTTCCGACGAGGAAGTTTCCTCCCTTAACGC
TTACATCAAGCTGATGCGGGCCGCCAACGCGGTGGAACGCAGATTGACTC
CCACGATTTCCGCGAGCGGGCTGACCTTCAGTCAGTTTGGCGTGCTCGAG
GCCCTCCATCACATCGGCCCCCTGTGCCAGCGCGATCTCTCCGAGAAGCT
TTTGCTGAGCGGCGGCAATATCACGATGGTCGTCAACAATCTTGAAAAAC
AGGGGCTGGTCGTGCGCCTGCGCACCGGCAACGACAAACGTTATTCCACG
GTTCATCTGACCTGGCGCGGCACGCAGATGATCAAGGAGATCTTCCCCAA
ACATCTCAAGGAAGTGGTGAAAGTCTTCACCGTT
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