mRNA_P-wetherbeei_contig13461.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig13461.1.1
Unique NamemRNA_P-wetherbeei_contig13461.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig13461.1.1 vs. uniprot
Match: A0A8K1CHK6_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CHK6_PYTOL)

HSP 1 Score: 108 bits (270), Expect = 1.650e-24
Identity = 55/159 (34.59%), Postives = 74/159 (46.54%), Query Frame = 1
Query:    1 QVCLLICDAEDGYRLQQCGHVFCLGCISAFLSSKVKDGQVFPACFHLGLPAAVPADGAAAIDEAGSPATAAHSACGRPIAEMDILRLLDPPTRAKYRRFRFAKENPTARNCPRCEHPQLGGTAVESAMRCQKCSHSYCFVHGDAHVSGTCADYERANRE 477
            Q+C         + L +CGH FC  C + +L  K++DGQV+P CFH               +   +  T    ACG  I+  DI  ++     +KY  F+F KE   AR CP C   Q         + C  C   YC+ HG+AH  GTCADYER+  E
Sbjct:    5 QICYENAPESTAFTLSECGHQFCRSCFARYLELKIRDGQVYPTCFH---------------EVESTDGTDTRVACGCVISPSDIESVVSCEVWSKYATFKFNKETKHARQCPYCSFSQACDGPEHPEVSCGGCKRVYCYTHGNAHEQGTCADYERSQAE 148          
BLAST of mRNA_P-wetherbeei_contig13461.1.1 vs. uniprot
Match: A0A8K1CHA1_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CHA1_PYTOL)

HSP 1 Score: 107 bits (267), Expect = 4.950e-23
Identity = 60/169 (35.50%), Postives = 80/169 (47.34%), Query Frame = 1
Query:    1 QVCLLICDAEDGYRLQQCGHVFCLGCISAFLSSKVKDGQVFPACFH-LGLPAAVPADGAAAIDEAGSPATAAHSACGRPIAEMDILRLLDPPTRAKYRRFRFAKENPTARNCPRCEHPQLGGTAVESAMRCQKCSHSYCFVHGDAHVSGTCADYERANREGEGTRRVRV 504
            Q+C       +   L  CGH FC+ C   +L  K+ DGQV+PACFH +G            +D+A    +    ACG  I   +I  L++     KY  F+F KEN   R CP C + QL          C+ C  +YCF HG+AH S +CADYE    E E   R  +
Sbjct:  229 QICYENNSLANSIELITCGHRFCIQCFKMYLEFKIVDGQVYPACFHEIG-----------EVDDA----SGKRKACGARIEPSEIELLVNSEVWKKYLTFKFNKENQYGRQCPYCGYSQLCAGPEHPECICESCGKAYCFTHGNAHASSSCADYEMRQLESEKLNRSAI 382          
BLAST of mRNA_P-wetherbeei_contig13461.1.1 vs. uniprot
Match: A0A7S2XFV0_9EUKA (Hypothetical protein n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2XFV0_9EUKA)

HSP 1 Score: 103 bits (258), Expect = 3.920e-22
Identity = 57/154 (37.01%), Postives = 77/154 (50.00%), Query Frame = 1
Query:   13 LICD----AEDGYRLQQCGHVFCLGCISAFLSSKVKDGQVFPACFHLGLPAAVPADGAAAIDEAGSPATAAHSACGRPIAEMDILRLLDPPTRAKYRRFRFAKENPTARNCPRCEHPQLGGTAVESAMRCQKCSHSYCFVHGDAHVSG-TCADY 459
            LIC      ++G+ LQ CGH++C  C   +L+  V DG+V P CF             + +D  G P       C +P++  DI RLLDP T  KY RF    +N   R+CP+C   Q G       M+C KC H +CF H +AH    TCA+Y
Sbjct:  101 LICQNNNSVDEGFALQNCGHMYCRSCFKKYLTLMVNDGKVHPRCFF----------NPSVLDRKGPP-------CNKPVSTGDIKRLLDPETFEKYERFLRRDQNSLMRDCPKCNADQPGDPE-RPWMKCVKCGHGFCFEHANAHPKEVTCAEY 236          
BLAST of mRNA_P-wetherbeei_contig13461.1.1 vs. uniprot
Match: A0A7S3YF03_9EUKA (Hypothetical protein n=2 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S3YF03_9EUKA)

HSP 1 Score: 100 bits (249), Expect = 6.810e-21
Identity = 55/154 (35.71%), Postives = 78/154 (50.65%), Query Frame = 1
Query:   13 LICD----AEDGYRLQQCGHVFCLGCISAFLSSKVKDGQVFPACFHLGLPAAVPADGAAAIDEAGSPATAAHSACGRPIAEMDILRLLDPPTRAKYRRFRFAKENPTARNCPRCEHPQLGGTAVESAMRCQKCSHSYCFVHGDAHVSG-TCADY 459
            LIC      ++G+ LQ CGH++C  C   +L+ KV DG+V P CF+            + +D  G P       C +PI+  DI RLLDP +  KY +F    +N   R+CP+C   Q G       M C +C H +CF H +AH    +CA+Y
Sbjct:   98 LICQNNNSIDEGFALQNCGHMYCRSCFKEYLTLKVNDGKVHPRCFY----------NPSVLDRKGPP-------CNQPISSGDIRRLLDPESFQKYEKFLRRDQNSLMRDCPKCNVDQPGDPE-RPWMTCVECDHGFCFEHANAHPKDVSCAEY 233          
BLAST of mRNA_P-wetherbeei_contig13461.1.1 vs. uniprot
Match: A0A7S1B5E8_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1B5E8_9STRA)

HSP 1 Score: 97.8 bits (242), Expect = 1.180e-19
Identity = 54/162 (33.33%), Postives = 81/162 (50.00%), Query Frame = 1
Query:   22 DAEDGYRLQQCGHVFCLGCISAFLSSKVKDGQVFPACFHLGLPAAVPADGAAAIDEAGSPATAAHSACGRPIAEMDILRLL--DPPTRAKYRRFRFAKENPTARNCPRCEHPQLGG--TAVESAMRC----------QKCSHSYCFVHGDAHVSGTCADYER 465
            +  D ++L  CGHVFC  C   +L SK+++G V+P CF        P +   +     S   + ++ CG  I  +DI   L  D  T  KY R+++ KENP+AR CP C+ P      +  +S+M+C          + C   +C+ H  AHV  TCA YE+
Sbjct:  292 NGYDPFQLSVCGHVFCKSCFVPYLKSKIEEGDVYPTCFF-------PIENVVSDSAVNS---SKYTPCGVHIPHIDIKECLKKDSKTLKKYHRYKYDKENPSARRCPDCDAPNSFKMISVKKSSMKCKVPKNPICFCENCDREFCYYHAGAHVGKTCAQYEK 443          
BLAST of mRNA_P-wetherbeei_contig13461.1.1 vs. uniprot
Match: A0A8K1CID9_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CID9_PYTOL)

HSP 1 Score: 69.7 bits (169), Expect = 2.030e-10
Identity = 49/179 (27.37%), Postives = 69/179 (38.55%), Query Frame = 1
Query:   88 FLSSKVKDGQVFPACFHLGLPAAVPADGAAAIDEAGSPATAAHSACGRPIAEMDILRLLDPPTRAKYRRFRFAKENPTARNCPRCEHPQLGGTAVESAMRCQKCSHSYCFVHGDAHVSGTCADYERANREGEGTRRVRVGLTEEEQGRILPCHFFPERNRKDQSTSLQNSSERILSACC 624
            +L  K++DGQV+P+CFH                           ACG  I+  DI  ++      KY  F+F KE      CP C   Q         + C  C   YC+VHG AH  G  AD++    E E   R+ VG ++   G    C +  ++     +T      E  L   C
Sbjct:    6 YLEIKIRDGQVYPSCFH----------------------EVETRACGIQISPSDIQAVVSNDIWTKYNTFKFKKETQHPGECPYCGFTQACEGPEHPEVTCGGCHLVYCYVHGRAHEGGNYADFKLKQSETEKLSRLVVGTSKPYPG----CQYNVDKEGNGCNTLKYTKCETELCWIC 158          
BLAST of mRNA_P-wetherbeei_contig13461.1.1 vs. uniprot
Match: X6LUA8_RETFI (Uncharacterized protein (Fragment) n=1 Tax=Reticulomyxa filosa TaxID=46433 RepID=X6LUA8_RETFI)

HSP 1 Score: 56.2 bits (134), Expect = 1.160e-5
Identity = 28/60 (46.67%), Postives = 35/60 (58.33%), Query Frame = 1
Query:  286 YRRFRFAKENPTARNCPRCEHPQLGGTAVESAMRCQKCSHSYCFVHGDAHVSG-TCADYE 462
            Y+RF+   ENP AR CP C+H Q+G     S M C +C+  YCF H  AH +  TC  YE
Sbjct:    1 YQRFKENLENPNARQCPSCQHTQIGDPHYPS-MVCSQCAALYCFYHSTAHGNEETCEAYE 59          
BLAST of mRNA_P-wetherbeei_contig13461.1.1 vs. uniprot
Match: A0A6H5LD10_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LD10_9PHAE)

HSP 1 Score: 56.6 bits (135), Expect = 1.330e-5
Identity = 22/47 (46.81%), Postives = 33/47 (70.21%), Query Frame = 1
Query:    1 QVCLLICDAEDGYRLQQCGHVFCLGCISAFLSSKVKDGQVFPACFHL 141
            Q+CL    AE G+ L  CGH+FC  C+ A+++SK+ D +V PACF++
Sbjct:  144 QICLDDRPAEAGFVLSACGHLFCRECLKAYVTSKINDAEVHPACFNV 190          
BLAST of mRNA_P-wetherbeei_contig13461.1.1 vs. uniprot
Match: A0A8K1CIW2_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CIW2_PYTOL)

HSP 1 Score: 55.1 bits (131), Expect = 3.760e-5
Identity = 19/46 (41.30%), Postives = 27/46 (58.70%), Query Frame = 1
Query:    1 QVCLLICDAEDGYRLQQCGHVFCLGCISAFLSSKVKDGQVFPACFH 138
            Q+C         ++L  CGH FC  C + +L  K++DGQV+P CFH
Sbjct:  214 QICYENAPVSTAFKLSACGHQFCRSCFAQYLEVKIRDGQVYPTCFH 259          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig13461.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A8K1CHK6_PYTOL1.650e-2434.59Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A8K1CHA1_PYTOL4.950e-2335.50Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A7S2XFV0_9EUKA3.920e-2237.01Hypothetical protein n=1 Tax=Lotharella oceanica T... [more]
A0A7S3YF03_9EUKA6.810e-2135.71Hypothetical protein n=2 Tax=Lotharella globosa Ta... [more]
A0A7S1B5E8_9STRA1.180e-1933.33Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
A0A8K1CID9_PYTOL2.030e-1027.37Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
X6LUA8_RETFI1.160e-546.67Uncharacterized protein (Fragment) n=1 Tax=Reticul... [more]
A0A6H5LD10_9PHAE1.330e-546.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A8K1CIW2_PYTOL3.760e-541.30Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig13461contigP-wetherbeei_contig13461:110..928 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FNI4
PFAMsIBR,zf-C3HC4,zf-RING_UBOX
Model size726
Max annot lvl2759|Eukaryota
KEGG koko:K11975,ko:K19306
Hectar predicted targeting categoryother localisation
Exons2
Evalue9.75e-13
EggNOG OGsKOG1815@1|root,KOG1815@2759|Eukaryota
EC2.1.1.309,2.3.2.31
Descriptionubiquitin conjugating enzyme binding
Cds size453
COG categoryO
BRITEko00000,ko01000,ko03009,ko04121
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185986.4282527-UTR-P-wetherbeei_contig13461:109..1391683185986.4282527-UTR-P-wetherbeei_contig13461:109..139Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig13461 110..139 -
1683185986.4476545-UTR-P-wetherbeei_contig13461:592..6181683185986.4476545-UTR-P-wetherbeei_contig13461:592..618Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig13461 593..618 -
1683185986.4571745-UTR-P-wetherbeei_contig13461:711..9281683185986.4571745-UTR-P-wetherbeei_contig13461:711..928Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig13461 712..928 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185986.4384086-CDS-P-wetherbeei_contig13461:139..5921683185986.4384086-CDS-P-wetherbeei_contig13461:139..592Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13461 140..592 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig13461.1.1prot_P-wetherbeei_contig13461.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig13461 140..592 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig13461.1.1

>prot_P-wetherbeei_contig13461.1.1 ID=prot_P-wetherbeei_contig13461.1.1|Name=mRNA_P-wetherbeei_contig13461.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=151bp
MDILRLLDPPTRAKYRRFRFAKENPTARNCPRCEHPQLGGTAVESAMRCQ
KCSHSYCFVHGDAHVSGTCADYERANREGEGTRRVRVGLTEEEQGRILPC
HFFPERNRKDQSTSLQNSSERILSACCSFAFCAGVGNVHTRHVKVAMFSR
*
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mRNA from alignment at P-wetherbeei_contig13461:110..928-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig13461.1.1 ID=mRNA_P-wetherbeei_contig13461.1.1|Name=mRNA_P-wetherbeei_contig13461.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=819bp|location=Sequence derived from alignment at P-wetherbeei_contig13461:110..928- (Phaeothamnion wetherbeei SAG_119_79)
CAGGTTTGCTTGCTGATTTGCGACGCGGAAGATGGATACCGGTTGCAGCA GTGCGGGCACGTGTTTTGCCTCGGCTGCATCAGCGCGTTCCTGAGCTCCA AGGTGAAGGACGGACAGGTCTTTCCGGCGTGCTTTCACCTGGGATTGCCA GCAGCCGTTCCCGCCGACGGCGCTGCCGCCATTGATGAAGCTGGCAGCCC CGCGACTGCCGCCCATTGTGCGACCGCCCCGGCAGAAGACGGCACCGCTG CTGCTACGGCCGCGACGGCTGCGCCATCCGCCGGCGCCGCCACTGCCGCA CCCGCCGCAGCCGCCTGTGGGCGGCCGATCGCCGAGATGGACATCCTGCG GCTGCTCGACCCGCCGACGCGCGCAAAGTACCGGCGCTTCCGGTTCGCGA AGGAAAATCCGACGGCCCGCAACTGCCCGCGCTGCGAGCACCCACAGCTG GGCGGCACCGCAGTGGAGTCGGCGATGCGCTGCCAGAAGTGCTCCCACAG CTACTGCTTCGTGCACGGCGACGCCCATGTCAGCGGCACGTGCGCGGACT ACGAGCGCGCCAACCGTGAGGGTGAGGGTACTCGCCGTGTACGGGTGGGG TTGACTGAAGAGGAACAGGGAAGGATTCTTCCATGTCACTTTTTTCCCGA AAGGAACCGAAAGGACCAGTCAACTTCTCTTCAAAACTCTTCGGAACGGA TACTTTCGGCTTGTTGCTCTTTTGCTTTCTGTGCGGGTGTGGGGAATGTG CACACGCGCCATGTTAAAGTGGCGATGTTTTCGAGATGAGACAGAGATTG CCACGTGTAAAAACTTTTT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig13461:110..928-

>mRNA_P-wetherbeei_contig13461.1.1 ID=mRNA_P-wetherbeei_contig13461.1.1|Name=mRNA_P-wetherbeei_contig13461.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=453bp|location=Sequence derived from alignment at P-wetherbeei_contig13461:110..928- (Phaeothamnion wetherbeei SAG_119_79)
ATGGACATCCTGCGGCTGCTCGACCCGCCGACGCGCGCAAAGTACCGGCG
CTTCCGGTTCGCGAAGGAAAATCCGACGGCCCGCAACTGCCCGCGCTGCG
AGCACCCACAGCTGGGCGGCACCGCAGTGGAGTCGGCGATGCGCTGCCAG
AAGTGCTCCCACAGCTACTGCTTCGTGCACGGCGACGCCCATGTCAGCGG
CACGTGCGCGGACTACGAGCGCGCCAACCGTGAGGGTGAGGGTACTCGCC
GTGTACGGGTGGGGTTGACTGAAGAGGAACAGGGAAGGATTCTTCCATGT
CACTTTTTTCCCGAAAGGAACCGAAAGGACCAGTCAACTTCTCTTCAAAA
CTCTTCGGAACGGATACTTTCGGCTTGTTGCTCTTTTGCTTTCTGTGCGG
GTGTGGGGAATGTGCACACGCGCCATGTTAAAGTGGCGATGTTTTCGAGA
TGA
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