mRNA_P-wetherbeei_contig13456.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig13456.1.1
Unique NamemRNA_P-wetherbeei_contig13456.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
[Close]
BLAST of mRNA_P-wetherbeei_contig13456.1.1 vs. uniprot
Match: A0A809XVF0_9BRAD (Uncharacterized protein n=4 Tax=Bradyrhizobium diazoefficiens TaxID=1355477 RepID=A0A809XVF0_9BRAD)

HSP 1 Score: 120 bits (300), Expect = 5.320e-32
Identity = 60/134 (44.78%), Postives = 84/134 (62.69%), Query Frame = 1 
Query:    4 IPDADHVLRYIGKKHVDNGVVNGTGFLSRPAEDSPSVNWMERFDLPLENQVKCVADRRRIRYEKRARLVRLNVGATKDYVRSQSPIAIELSFVSDPLEAENGRPADISHALIRGVPTVETPEGEAVKDLFSHCI 405
            IP+  +V+RY+    +D GVV+  GF  RP E+ PS+NW+E F  PL NQ+  V    R+ Y      V+L VG T+D+VR   P++ +L F SDPLEA     AD SHALIRG+P+ +TPE   V++L + C+
Sbjct:    2 IPNDGNVVRYLRPTQIDQGVVDADGFF-RPGENEPSINWLEAFPAPLANQLDNVRRVARLTYAATGHSVQLPVGPTRDFVRLADPVSTDLQFDSDPLEANERYAADPSHALIRGMPSHQTPEAALVRELLARCV 134
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig13456.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A809XVF0_9BRAD5.320e-3244.78Uncharacterized protein n=4 Tax=Bradyrhizobium dia... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig13456contigP-wetherbeei_contig13456:1101..1535 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size435
Hectar predicted targeting categoryother localisation
Exons1
Cds size435
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185986.0425224-CDS-P-wetherbeei_contig13456:1100..15351683185986.0425224-CDS-P-wetherbeei_contig13456:1100..1535Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13456 1101..1535 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig13456.1.1prot_P-wetherbeei_contig13456.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig13456 1101..1535 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig13456.1.1

>prot_P-wetherbeei_contig13456.1.1 ID=prot_P-wetherbeei_contig13456.1.1|Name=mRNA_P-wetherbeei_contig13456.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=145bp
EIPDADHVLRYIGKKHVDNGVVNGTGFLSRPAEDSPSVNWMERFDLPLEN
QVKCVADRRRIRYEKRARLVRLNVGATKDYVRSQSPIAIELSFVSDPLEA
ENGRPADISHALIRGVPTVETPEGEAVKDLFSHCILNEFAVTPD*
back to top

mRNA from alignment at P-wetherbeei_contig13456:1101..1535-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig13456.1.1 ID=mRNA_P-wetherbeei_contig13456.1.1|Name=mRNA_P-wetherbeei_contig13456.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=435bp|location=Sequence derived from alignment at P-wetherbeei_contig13456:1101..1535- (Phaeothamnion wetherbeei SAG_119_79)
GAAATCCCTGATGCAGATCACGTGCTTCGCTACATTGGCAAGAAGCATGT
CGATAACGGTGTCGTAAACGGCACGGGCTTTCTCTCGCGGCCCGCTGAAG
ACAGTCCTTCAGTTAATTGGATGGAGCGTTTTGATCTACCGCTAGAAAAT
CAGGTGAAGTGCGTCGCGGACCGCCGCCGCATCAGGTACGAGAAACGGGC
GCGTTTGGTTCGGCTTAATGTTGGAGCAACAAAGGACTATGTGAGAAGTC
AATCCCCGATCGCGATAGAACTCTCGTTTGTTTCGGATCCGCTAGAAGCC
GAGAACGGTAGGCCGGCCGACATCTCACACGCACTCATCCGCGGCGTTCC
AACTGTCGAAACCCCTGAGGGCGAAGCAGTCAAAGATTTGTTCTCGCATT
GCATCCTCAACGAGTTCGCCGTTACTCCAGACTGA
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig13456:1101..1535-

>mRNA_P-wetherbeei_contig13456.1.1 ID=mRNA_P-wetherbeei_contig13456.1.1|Name=mRNA_P-wetherbeei_contig13456.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=435bp|location=Sequence derived from alignment at P-wetherbeei_contig13456:1101..1535- (Phaeothamnion wetherbeei SAG_119_79)
GAAATCCCTGATGCAGATCACGTGCTTCGCTACATTGGCAAGAAGCATGT
CGATAACGGTGTCGTAAACGGCACGGGCTTTCTCTCGCGGCCCGCTGAAG
ACAGTCCTTCAGTTAATTGGATGGAGCGTTTTGATCTACCGCTAGAAAAT
CAGGTGAAGTGCGTCGCGGACCGCCGCCGCATCAGGTACGAGAAACGGGC
GCGTTTGGTTCGGCTTAATGTTGGAGCAACAAAGGACTATGTGAGAAGTC
AATCCCCGATCGCGATAGAACTCTCGTTTGTTTCGGATCCGCTAGAAGCC
GAGAACGGTAGGCCGGCCGACATCTCACACGCACTCATCCGCGGCGTTCC
AACTGTCGAAACCCCTGAGGGCGAAGCAGTCAAAGATTTGTTCTCGCATT
GCATCCTCAACGAGTTCGCCGTTACTCCAGACTGA
back to top