mRNA_P-wetherbeei_contig13454.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig13454.1.1
Unique NamemRNA_P-wetherbeei_contig13454.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig13454.1.1 vs. uniprot
Match: H3GWZ1_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GWZ1_PHYRM)

HSP 1 Score: 80.1 bits (196), Expect = 1.170e-15
Identity = 38/85 (44.71%), Postives = 55/85 (64.71%), Query Frame = 1
Query:    1 REEGVIVSLREGFGFIRCATREGDAFFRLRDVMCNRSGGGGSCEVRFNLTSSDRGDKLRATRVEVVPPGTVWTQHPVATGLAGTV 255
            RE G I +L+E FGFI+CA R GDA+FR  DVM N        EV F++ + ++ D +RATR++++P GT+  +  VA GL G +
Sbjct:  628 RETGTINALKEDFGFIKCAERSGDAYFRFSDVMGNSRSFKNGTEVAFDVIADNKSDNIRATRLQILPRGTIKWEDVVADGLEGKI 712          
BLAST of mRNA_P-wetherbeei_contig13454.1.1 vs. uniprot
Match: A0A225W3C0_9STRA (Uncharacterized protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225W3C0_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 1.420e-14
Identity = 39/86 (45.35%), Postives = 59/86 (68.60%), Query Frame = 1
Query:    1 REEGVIVSLREGFGFIRCATREGDAFFRLRDVM-CNRSGGGGSCEVRFNLTSSDRGDKLRATRVEVVPPGTVWTQHPVATGLAGTV 255
            RE GVI +++E FGFI+CA R GDA+FR  DVM  +RS   G+ EV F++ + ++ D +RATR++++P GT+  +   A GL G +
Sbjct:  588 RETGVINAMKEDFGFIKCAERSGDAYFRFSDVMGASRSFNNGT-EVAFDVLADNKSDHIRATRLQILPRGTIKWEDVAAEGLEGKI 672          
BLAST of mRNA_P-wetherbeei_contig13454.1.1 vs. uniprot
Match: D0NFB4_PHYIT (Uncharacterized protein n=2 Tax=Phytophthora infestans TaxID=4787 RepID=D0NFB4_PHYIT)

HSP 1 Score: 77.0 bits (188), Expect = 1.420e-14
Identity = 37/85 (43.53%), Postives = 53/85 (62.35%), Query Frame = 1
Query:    1 REEGVIVSLREGFGFIRCATREGDAFFRLRDVMCNRSGGGGSCEVRFNLTSSDRGDKLRATRVEVVPPGTVWTQHPVATGLAGTV 255
            RE GVI +L+E FGFI+CA R GDA+FR  DVM          EV F++   ++ D +RATR++++P GT+  +   A GL G +
Sbjct:  626 RETGVINALKEDFGFIKCAERSGDAYFRFSDVMGTSRSFNNGTEVAFDVLVDNKSDHIRATRLQILPRGTIKWEDVAAEGLEGRI 710          
BLAST of mRNA_P-wetherbeei_contig13454.1.1 vs. uniprot
Match: A0A662X4D1_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662X4D1_9STRA)

HSP 1 Score: 76.3 bits (186), Expect = 2.660e-14
Identity = 36/85 (42.35%), Postives = 55/85 (64.71%), Query Frame = 1
Query:    1 REEGVIVSLREGFGFIRCATREGDAFFRLRDVMCNRSGGGGSCEVRFNLTSSDRGDKLRATRVEVVPPGTVWTQHPVATGLAGTV 255
            RE G+I +++E FGFI+CA R GDA+FR  DVM +        EV F++ + ++ D +RATR+ ++P GT+  +  VA GL G +
Sbjct:  794 RETGMINAMKEDFGFIKCAERAGDAYFRFSDVMGSNRNFRSGTEVAFDVLADNKADHMRATRLVILPQGTIKWEDVVAEGLEGEI 878          
BLAST of mRNA_P-wetherbeei_contig13454.1.1 vs. uniprot
Match: A0A329RLV6_9STRA (Uncharacterized protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A329RLV6_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 3.610e-14
Identity = 39/86 (45.35%), Postives = 58/86 (67.44%), Query Frame = 1
Query:    1 REEGVIVSLREGFGFIRCATREGDAFFRLRDVM-CNRSGGGGSCEVRFNLTSSDRGDKLRATRVEVVPPGTVWTQHPVATGLAGTV 255
            RE GVI +++E FGFI+CA R GDA+FR  DVM  +RS   G+ EV F++   ++ D +RATR++++P GT+  +   A GL G +
Sbjct:  616 RETGVINAMKEDFGFIKCAERSGDAYFRFSDVMGASRSFNNGT-EVAFDVLVDNKSDHIRATRLQILPRGTIKWEDVAAEGLEGKI 700          
BLAST of mRNA_P-wetherbeei_contig13454.1.1 vs. uniprot
Match: A0A3R7K7D7_9STRA (Uncharacterized protein (Fragment) n=2 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7K7D7_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 3.620e-14
Identity = 35/85 (41.18%), Postives = 54/85 (63.53%), Query Frame = 1
Query:    1 REEGVIVSLREGFGFIRCATREGDAFFRLRDVMCNRSGGGGSCEVRFNLTSSDRGDKLRATRVEVVPPGTVWTQHPVATGLAGTV 255
            RE G I ++++ FGFI+CA R GDA+FR  DVM +    G   EV F++   ++ D +RA+R++++P GTV  +   A GL G +
Sbjct:  548 RETGAINAMKDDFGFIKCAERSGDAYFRFSDVMGSNQNFGSGTEVAFDVAVDNKSDHVRASRLQILPRGTVKWEDVAAEGLEGEI 632          
BLAST of mRNA_P-wetherbeei_contig13454.1.1 vs. uniprot
Match: A0A3F2RIS8_9STRA (Uncharacterized protein n=1 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RIS8_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 3.640e-14
Identity = 36/85 (42.35%), Postives = 54/85 (63.53%), Query Frame = 1
Query:    1 REEGVIVSLREGFGFIRCATREGDAFFRLRDVMCNRSGGGGSCEVRFNLTSSDRGDKLRATRVEVVPPGTVWTQHPVATGLAGTV 255
            RE G I ++++ FGFI+CA R GDA+FR  DVM +    G   EV F++   ++ D +RA+R++++P GTV  +   A GL G V
Sbjct:  649 RETGAINAMKDDFGFIKCAERSGDAYFRFSDVMGSNRNFGSGTEVAFDVAVDNKSDHVRASRLQILPRGTVKWEDVAAEGLEGKV 733          
BLAST of mRNA_P-wetherbeei_contig13454.1.1 vs. uniprot
Match: G4Z9V3_PHYSP (Uncharacterized protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4Z9V3_PHYSP)

HSP 1 Score: 74.7 bits (182), Expect = 9.210e-14
Identity = 40/86 (46.51%), Postives = 57/86 (66.28%), Query Frame = 1
Query:    1 REEGVIVSLREGFGFIRCATREGDAFFRLRDVM-CNRSGGGGSCEVRFNLTSSDRGDKLRATRVEVVPPGTVWTQHPVATGLAGTV 255
            RE G I +++E FGFI+CA R GDA+FR  DVM  +RS   G+ EV F++   ++ D +RATR++++P GTV  +   A GL G V
Sbjct:  626 RETGTINAMKEDFGFIKCAERSGDAYFRFSDVMGISRSYNNGT-EVAFDVQVDNKSDHIRATRLQILPRGTVKWEDVAAEGLEGKV 710          
BLAST of mRNA_P-wetherbeei_contig13454.1.1 vs. uniprot
Match: A0A3M6V819_9STRA (Uncharacterized protein n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6V819_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 9.220e-14
Identity = 34/85 (40.00%), Postives = 52/85 (61.18%), Query Frame = 1
Query:    1 REEGVIVSLREGFGFIRCATREGDAFFRLRDVMCNRSGGGGSCEVRFNLTSSDRGDKLRATRVEVVPPGTVWTQHPVATGLAGTV 255
            RE G+I +++E FGFI+CA R GDA+FR  DVM  +       EV F++    + D +RA R++++P GTV  ++    GL G +
Sbjct:  665 RETGIINAMKEDFGFIKCAERSGDAYFRFSDVMGTQRSFNNGTEVAFDVIVDSKSDHIRAARLQILPRGTVQWEYVAGEGLEGKI 749          
BLAST of mRNA_P-wetherbeei_contig13454.1.1 vs. uniprot
Match: W2QJD1_PHYPN (Uncharacterized protein n=12 Tax=Phytophthora TaxID=4783 RepID=W2QJD1_PHYPN)

HSP 1 Score: 73.9 bits (180), Expect = 1.720e-13
Identity = 36/85 (42.35%), Postives = 52/85 (61.18%), Query Frame = 1
Query:    1 REEGVIVSLREGFGFIRCATREGDAFFRLRDVMCNRSGGGGSCEVRFNLTSSDRGDKLRATRVEVVPPGTVWTQHPVATGLAGTV 255
            RE GVI +++E FGFI+CA R GDA+FR  DVM          EV F++   ++ D +RATR++++P GTV  +   A  L G +
Sbjct:  608 RETGVINAMKEDFGFIKCAERSGDAYFRFSDVMGTSRSFNNGTEVAFDVLVDNKSDHIRATRLQILPRGTVKWEDVAAEDLEGQI 692          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig13454.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
H3GWZ1_PHYRM1.170e-1544.71Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
A0A225W3C0_9STRA1.420e-1445.35Uncharacterized protein n=1 Tax=Phytophthora megak... [more]
D0NFB4_PHYIT1.420e-1443.53Uncharacterized protein n=2 Tax=Phytophthora infes... [more]
A0A662X4D1_9STRA2.660e-1442.35Uncharacterized protein n=2 Tax=Nothophytophthora ... [more]
A0A329RLV6_9STRA3.610e-1445.35Uncharacterized protein n=2 Tax=Phytophthora TaxID... [more]
A0A3R7K7D7_9STRA3.620e-1441.18Uncharacterized protein (Fragment) n=2 Tax=Phytoph... [more]
A0A3F2RIS8_9STRA3.640e-1442.35Uncharacterized protein n=1 Tax=Phytophthora kerno... [more]
G4Z9V3_PHYSP9.210e-1446.51Uncharacterized protein n=1 Tax=Phytophthora sojae... [more]
A0A3M6V819_9STRA9.220e-1440.00Uncharacterized protein n=2 Tax=Peronospora effusa... [more]
W2QJD1_PHYPN1.720e-1342.35Uncharacterized protein n=12 Tax=Phytophthora TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig13454contigP-wetherbeei_contig13454:991..1347 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog164328.Phyra82063
PFAMsCSD,R3H
Model size255
Max annot lvl4776|Peronosporales
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.92e-16
EggNOG OGs28K4H@1|root,2QSJ1@2759|Eukaryota,3Q8UF@4776|Peronosporales
DescriptionCold shock protein domain
Cds size255
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185986.0053227-CDS-P-wetherbeei_contig13454:990..11211683185986.0053227-CDS-P-wetherbeei_contig13454:990..1121Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13454 991..1121 -
1683185986.0156975-CDS-P-wetherbeei_contig13454:1223..13471683185986.0156975-CDS-P-wetherbeei_contig13454:1223..1347Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13454 1224..1347 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig13454.1.1prot_P-wetherbeei_contig13454.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig13454 991..1347 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig13454.1.1

>prot_P-wetherbeei_contig13454.1.1 ID=prot_P-wetherbeei_contig13454.1.1|Name=mRNA_P-wetherbeei_contig13454.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=85bp
REEGVIVSLREGFGFIRCATREGDAFFRLRDVMCNRSGGGGSCEVRFNLT
SSDRGDKLRATRVEVVPPGTVWTQHPVATGLAGTV
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mRNA from alignment at P-wetherbeei_contig13454:991..1347-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig13454.1.1 ID=mRNA_P-wetherbeei_contig13454.1.1|Name=mRNA_P-wetherbeei_contig13454.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=357bp|location=Sequence derived from alignment at P-wetherbeei_contig13454:991..1347- (Phaeothamnion wetherbeei SAG_119_79)
CGGGAGGAAGGCGTCATTGTGTCGCTGCGCGAAGGCTTTGGTTTCATCCG ATGCGCCACGCGGGAGGGAGACGCCTTCTTCCGCCTGCGGGACGTCATGT GCAACCGGAGCGGCGGCGGCGGCAGTAAGAGGGGAGATGGCGGCGGCGGC GGCGAAAGCGGCGACGGTGGAAGCACGGGCAGCGGCGGCGGCGGCGGCGG CAACGCGGCTGGCGCGCTCGTGGAAGGCTGCGAGGTGCGGTTCAACCTCA CTTCGAGCGACCGCGGCGACAAGCTGCGGGCGACGCGGGTAGAGGTGGTG CCGCCGGGCACCGTATGGACGCAGCACCCCGTGGCCACCGGCCTGGCAGG CACCGTG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig13454:991..1347-

>mRNA_P-wetherbeei_contig13454.1.1 ID=mRNA_P-wetherbeei_contig13454.1.1|Name=mRNA_P-wetherbeei_contig13454.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=255bp|location=Sequence derived from alignment at P-wetherbeei_contig13454:991..1347- (Phaeothamnion wetherbeei SAG_119_79)
CGGGAGGAAGGCGTCATTGTGTCGCTGCGCGAAGGCTTTGGTTTCATCCG
ATGCGCCACGCGGGAGGGAGACGCCTTCTTCCGCCTGCGGGACGTCATGT
GCAACCGGAGCGGCGGCGGCGGCAGCTGCGAGGTGCGGTTCAACCTCACT
TCGAGCGACCGCGGCGACAAGCTGCGGGCGACGCGGGTAGAGGTGGTGCC
GCCGGGCACCGTATGGACGCAGCACCCCGTGGCCACCGGCCTGGCAGGCA
CCGTG
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