mRNA_P-wetherbeei_contig13450.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig13450.1.1
Unique NamemRNA_P-wetherbeei_contig13450.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig13450.1.1 vs. uniprot
Match: A0A2A5ACW0_9BACT (Uncharacterized protein n=1 Tax=Candidatus Cloacimonetes bacterium TaxID=2030808 RepID=A0A2A5ACW0_9BACT)

HSP 1 Score: 70.1 bits (170), Expect = 1.150e-11
Identity = 37/95 (38.95%), Postives = 59/95 (62.11%), Query Frame = 1 
Query:    1 LTKFKKFQLASLQTPLEKWLHFLKYSLYYQEMTKQIPAEFDSEEGMAQAIAMYQRVSASRELRSLLDRQELAEHDRATFIQDATQQGMRQGLAEG 285
            L KF K +  SL +P EKWL+  KY   YQ+ +  IP E  +EEG+ +A+   +  ++  + R L++ +E   HD+A+F  DA ++G++QG AEG
Sbjct:  181 LAKFSKDKPRSLSSPFEKWLYTFKYGDLYQKESDMIPQELITEEGIEEALQAMRFANSDSQTRYLIEAREKFVHDQASFNDDAREEGLKQGKAEG 275
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BLAST of mRNA_P-wetherbeei_contig13450.1.1 vs. uniprot
Match: UPI001454DD17 (PD-(D/E)XK nuclease family transposase n=1 Tax=Cohnella fermenti TaxID=2565925 RepID=UPI001454DD17)

HSP 1 Score: 57.0 bits (136), Expect = 7.730e-8
Identity = 38/114 (33.33%), Postives = 62/114 (54.39%), Query Frame = 1 
Query:   43 PLEKWLHFLKYSLYYQEMT-KQIPAEFDSEEGMAQAIAMYQRVSASRELRSLLDRQELAEHDRATFIQDATQQGMRQGLAEGMRQIAQRALARGMAPEDVADLTGLTYDEVVSL 381
            PL +WL FL+     Q++T +Q+    + +E + +A     ++++    R L   +E A HDRAT++QDAT  G    +  G+ Q A R L RG   +D+A+ TG+    + SL
Sbjct:   18 PLHRWLRFLE-----QDVTPEQLQELMEVDEMIGEAEDRLNQLASDEVTRRLYRMREKALHDRATWLQDATNDG----IERGVEQTAIRMLVRGFTADDIAEATGIDLQRIESL 122
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BLAST of mRNA_P-wetherbeei_contig13450.1.1 vs. uniprot
Match: A0A4S4BUI3_9BACL (Uncharacterized protein n=1 Tax=Cohnella fermenti TaxID=2565925 RepID=A0A4S4BUI3_9BACL)

HSP 1 Score: 57.0 bits (136), Expect = 1.430e-7
Identity = 38/114 (33.33%), Postives = 62/114 (54.39%), Query Frame = 1 
Query:   43 PLEKWLHFLKYSLYYQEMT-KQIPAEFDSEEGMAQAIAMYQRVSASRELRSLLDRQELAEHDRATFIQDATQQGMRQGLAEGMRQIAQRALARGMAPEDVADLTGLTYDEVVSL 381
            PL +WL FL+     Q++T +Q+    + +E + +A     ++++    R L   +E A HDRAT++QDAT  G    +  G+ Q A R L RG   +D+A+ TG+    + SL
Sbjct:   51 PLHRWLRFLE-----QDVTPEQLQELMEVDEMIGEAEDRLNQLASDEVTRRLYRMREKALHDRATWLQDATNDG----IERGVEQTAIRMLVRGFTADDIAEATGIDLQRIESL 155
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig13450.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A2A5ACW0_9BACT1.150e-1138.95Uncharacterized protein n=1 Tax=Candidatus Cloacim... [more]
UPI001454DD177.730e-833.33PD-(D/E)XK nuclease family transposase n=1 Tax=Coh... [more]
A0A4S4BUI3_9BACL1.430e-733.33Uncharacterized protein n=1 Tax=Cohnella fermenti ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig13450contigP-wetherbeei_contig13450:266..649 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog402777.KB235898_gene5281
PFAMsPDDEXK_2
Model size384
Max annot lvl1117|Cyanobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.42e-06
EggNOG OGsCOG5464@1|root,COG5464@2|Bacteria,1G211@1117|Cyanobacteria,1H8YW@1150|Oscillatoriales
DescriptionPD-(D/E)XK nuclease family transposase
Cds size384
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185985.9759898-CDS-P-wetherbeei_contig13450:265..6491683185985.9759898-CDS-P-wetherbeei_contig13450:265..649Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13450 266..649 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig13450.1.1prot_P-wetherbeei_contig13450.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig13450 266..649 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig13450.1.1

>prot_P-wetherbeei_contig13450.1.1 ID=prot_P-wetherbeei_contig13450.1.1|Name=mRNA_P-wetherbeei_contig13450.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=128bp
LTKFKKFQLASLQTPLEKWLHFLKYSLYYQEMTKQIPAEFDSEEGMAQAI
AMYQRVSASRELRSLLDRQELAEHDRATFIQDATQQGMRQGLAEGMRQIA
QRALARGMAPEDVADLTGLTYDEVVSL*
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mRNA from alignment at P-wetherbeei_contig13450:266..649-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig13450.1.1 ID=mRNA_P-wetherbeei_contig13450.1.1|Name=mRNA_P-wetherbeei_contig13450.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=384bp|location=Sequence derived from alignment at P-wetherbeei_contig13450:266..649- (Phaeothamnion wetherbeei SAG_119_79)
TTGACGAAATTTAAGAAGTTCCAGTTGGCGTCTCTTCAGACGCCTCTCGA
GAAGTGGCTTCACTTCTTGAAATATTCGCTGTATTATCAGGAAATGACGA
AGCAAATTCCGGCAGAATTCGATAGCGAAGAGGGCATGGCCCAGGCTATC
GCTATGTATCAGCGCGTGAGCGCCAGCCGTGAGCTCCGCTCCCTCCTCGA
TCGCCAGGAGCTCGCCGAACATGATAGGGCGACCTTCATCCAAGATGCCA
CCCAGCAGGGAATGCGACAGGGCCTAGCTGAGGGGATGCGACAGATCGCA
CAGAGGGCTCTGGCCAGGGGGATGGCTCCCGAGGACGTGGCAGACCTGAC
GGGGCTGACCTATGACGAGGTTGTCAGCCTATAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig13450:266..649-

>mRNA_P-wetherbeei_contig13450.1.1 ID=mRNA_P-wetherbeei_contig13450.1.1|Name=mRNA_P-wetherbeei_contig13450.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=384bp|location=Sequence derived from alignment at P-wetherbeei_contig13450:266..649- (Phaeothamnion wetherbeei SAG_119_79)
TTGACGAAATTTAAGAAGTTCCAGTTGGCGTCTCTTCAGACGCCTCTCGA
GAAGTGGCTTCACTTCTTGAAATATTCGCTGTATTATCAGGAAATGACGA
AGCAAATTCCGGCAGAATTCGATAGCGAAGAGGGCATGGCCCAGGCTATC
GCTATGTATCAGCGCGTGAGCGCCAGCCGTGAGCTCCGCTCCCTCCTCGA
TCGCCAGGAGCTCGCCGAACATGATAGGGCGACCTTCATCCAAGATGCCA
CCCAGCAGGGAATGCGACAGGGCCTAGCTGAGGGGATGCGACAGATCGCA
CAGAGGGCTCTGGCCAGGGGGATGGCTCCCGAGGACGTGGCAGACCTGAC
GGGGCTGACCTATGACGAGGTTGTCAGCCTATAG
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