mRNA_P-wetherbeei_contig13446.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
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Overview
Homology
BLAST of mRNA_P-wetherbeei_contig13446.2.1 vs. uniprot
Match: A0A6N7GUV1_9HYPH (FCD domain-containing protein n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A6N7GUV1_9HYPH) HSP 1 Score: 130 bits (328), Expect = 5.890e-35 Identity = 70/141 (49.65%), Postives = 99/141 (70.21%), Query Frame = 1
Query: 19 NASTVDRIMHHIKDDLKRGRLAPGQRLIESELQQAVVASRDSVREDLRKLAADGLIEIHLHKGARVRRLLRTEVESLYDIREVLEGLAARLAAQHMRAPAFRKQVAAIEAAYDRADDGSARAYMGYNEAFHRAILDLSART 441
++S V+R++ +I ++ GR APGQRLIE ELQ + SR VRE +R+LAA+ ++++ LHKGAR+R+L E+ ++YD+REVLEGLAARLAAQ+ P Q+ A+E +DR DG+ R Y+ YNE FHR I+ S T
Sbjct: 23 DSSAVERVIGYIISGIRDGRFAPGQRLIEGELQAMLQVSRGPVREAVRRLAAENILQLELHKGARLRQLTPEEINAIYDVREVLEGLAARLAAQNASFP--DDQLQALEREFDRRFDGTTRHYLAYNEEFHRLIVRSSGNT 161
BLAST of mRNA_P-wetherbeei_contig13446.2.1 vs. uniprot
Match: A0A0X3SB20_9ACTN (HTH gntR-type domain-containing protein n=1 Tax=Streptomyces sp. NRRL F-5122 TaxID=1609098 RepID=A0A0X3SB20_9ACTN) HSP 1 Score: 120 bits (301), Expect = 7.040e-31 Identity = 64/140 (45.71%), Postives = 96/140 (68.57%), Query Frame = 1
Query: 25 STVDRIMHHIKDDLKRGRLAPGQRLIESELQQAVVASRDSVREDLRKLAADGLIEIHLHKGARVRRLLRTEVESLYDIREVLEGLAARLAAQHMRAPAFRKQV-AAIEAAYDRADDGSARAYMGYNEAFHRAILDLSART 441
S VDR++ ++ ++ GR APGQRL+E++L + + R+++RE L +L++DGL+ I H+GA VRRL RTEVE LY++REVLEGLAARLAA H+ P R ++ AA++A + A Y+ N FHR ++++S T
Sbjct: 24 SAVDRVVATVRSGVRDGRFAPGQRLVEADLMRELGIGRNTLREALSRLSSDGLVTIAPHRGASVRRLTRTEVEQLYELREVLEGLAARLAALHINTPGHRDRLLAALDAVQETARTAEMPQYIDENLRFHRTVVEMSGHT 163
BLAST of mRNA_P-wetherbeei_contig13446.2.1 vs. uniprot
Match: UPI001B272EA0 (GntR family transcriptional regulator n=1 Tax=Streptomyces sp. NEAU-YJ-81 TaxID=2820288 RepID=UPI001B272EA0) HSP 1 Score: 108 bits (271), Expect = 1.590e-26 Identity = 58/139 (41.73%), Postives = 94/139 (67.63%), Query Frame = 1
Query: 22 ASTVDRIMHHIKDDLKRGRLAPGQRLIESELQQAVVASRDSVREDLRKLAADGLIEIHLHKGARVRRLLRTEVESLYDIREVLEGLAARLAAQHMRAPAFRKQV-AAIEAAYDRADDGSARAYMGYNEAFHRAILDLSA 435
+S V+R++ +++ +K GR PGQRL+E++L + + R+++RE L +L +DG ++I H+GA +RRL R +V LY++REVLEGLA+RLAA+ + R ++ AA+E+ ++ A YM N FHR I++LSA
Sbjct: 10 SSAVERVVATVREGVKSGRYVPGQRLVEADLMRELGVGRNALREALSRLRSDGFVQIEAHRGASIRRLTREDVAQLYELREVLEGLASRLAAERIDETDHRDRLSAALESMHEVARTAELPTYMDENIHFHRTIVELSA 148
BLAST of mRNA_P-wetherbeei_contig13446.2.1 vs. uniprot
Match: UPI002009FA9F (GntR family transcriptional regulator n=1 Tax=Rhodococcus sp. HM1 TaxID=2937759 RepID=UPI002009FA9F) HSP 1 Score: 107 bits (266), Expect = 7.700e-26 Identity = 60/137 (43.80%), Postives = 90/137 (65.69%), Query Frame = 1
Query: 25 STVDRIMHHIKDDLKRGRLAPGQRLIESELQQAVVASRDSVREDLRKLAADGLIEIHLHKGARVRRLLRTEVESLYDIREVLEGLAARLAAQHMRAPAFRKQV-AAIEAAYDRADDGSARAYMGYNEAFHRAILDLS 432
+ V R + I++ ++ GR PGQRLIE +L Q + R+++RE L +L +DGL+++ H+GA +RRL R +V Y +REVLEGL+ARLAAQ++ AP R++V +AI+ + A G Y N FHR I++LS
Sbjct: 10 TAVQRAVEAIREGVRVGRFVPGQRLIEPDLMQELGVGRNALREALAQLGSDGLVKLEPHRGASIRRLTREDVAHFYQVREVLEGLSARLAAQNIDAPGHRERVLSAIDKSRSIAAAGDQPTYFDENFRFHRIIVELS 146
BLAST of mRNA_P-wetherbeei_contig13446.2.1 vs. uniprot
Match: A0A437JAM5_9SPHN (GntR family transcriptional regulator n=1 Tax=Sphingobium algorifonticola TaxID=2008318 RepID=A0A437JAM5_9SPHN) HSP 1 Score: 104 bits (259), Expect = 9.750e-25 Identity = 59/140 (42.14%), Postives = 91/140 (65.00%), Query Frame = 1
Query: 19 NASTVDRIMHHIKDDLKRGRLAPGQRLIESELQQAVVASRDSVREDLRKLAADGLIEIHLHKGARVRRLLRTEVESLYDIREVLEGLAARLAAQHMRAPAFRKQVA--AIEAAYDRADDGSARAYMGYNEAFHRAILDLS 432
N STV+ I +++D++ GRLAP QRL+E++L A+ SR +RE R+LA++GL+E+ H+GA+VR+L + E+ +L+ +REVLEGL+ARLAA +++ A + A DDG AY N+ FH I+ +S
Sbjct: 17 NVSTVEAITDRLREDIRSGRLAPSQRLVEADLTVALGVSRGPLREAFRRLASEGLLELQHHRGAKVRQLSKAEIIALFQVREVLEGLSARLAAMAVQSGACDSAPLDDLVNAMNVALDDGRIGAYREKNQQFHDLIMAMS 156
BLAST of mRNA_P-wetherbeei_contig13446.2.1 vs. uniprot
Match: A0A2C8ZXL6_9BURK (Transcriptional regulator, GntR family n=1 Tax=Burkholderia sp. D7 TaxID=1873884 RepID=A0A2C8ZXL6_9BURK) HSP 1 Score: 99.8 bits (247), Expect = 5.290e-23 Identity = 53/143 (37.06%), Postives = 91/143 (63.64%), Query Frame = 1
Query: 19 NASTVDRIMHHIKDDLKRGRLAPGQRLIESELQQAVVASRDSVREDLRKLAADGLIEIHLHKGARVRRLLRTEVESLYDIREVLEGLAARLAAQHMRAPAFRKQVAAIEAAYDRADDGSARA--YMGYNEAFHRAILDLSART 441
+ STV+ +M HI++ ++ G+ A G R++E+EL++ + SR S+RE + +LAA+GL+E++LH+GA VR L E+ L +IREV+EGLAAR AA + + +++ ++ D A+D + Y N +H +L++ T
Sbjct: 9 DVSTVEFVMSHIREGVRSGKFAVGSRIVEAELRRILGVSRGSIREAVSRLAAEGLLEVNLHRGASVRALSPEEIRDLLEIREVVEGLAARKAASRIGIADYAERLRLVQKRLDAAEDNAEDPDDYFRANADYHSLLLEIGGNT 151
BLAST of mRNA_P-wetherbeei_contig13446.2.1 vs. uniprot
Match: A0A853GPW2_9BURK (GntR family transcriptional regulator n=1 Tax=Alcaligenaceae bacterium TaxID=2021368 RepID=A0A853GPW2_9BURK) HSP 1 Score: 100 bits (248), Expect = 6.290e-23 Identity = 61/152 (40.13%), Postives = 91/152 (59.87%), Query Frame = 1
Query: 19 NASTVDRIMHHIKDDLKRGRLAPGQRLIESELQQAVVASRDSVREDLRKLAADGLIEIHLHKGARVRRLLRTEVESLYDIREVLEGLAARLAAQHMRAPAFRKQVAAIEAAYDRADDGSA-------RAYMGYNEAFHRAILDLSARTSCSI 453
+ TV+R+ +H+K+ + G L PGQRL+ +L + + SR S+RE R+LA + L+E+ ++GA VRRL EV SL+ IRE LEG AARLAA H+ R+ AI +G A +A+M +N AFH+AI+ +S T ++
Sbjct: 16 SGDTVERVANHLKEQILEGSLVPGQRLVSRDLMEHLGVSRGSLREAFRRLAGERLVELIPNRGAIVRRLSAAEVVSLFQIREALEGQAARLAADHINEADNRRVFQAI------VKEGEALRRSMNMQAFMIHNRAFHQAIVKISGNTELAL 161
BLAST of mRNA_P-wetherbeei_contig13446.2.1 vs. uniprot
Match: A0A2W4SYN0_9PROT (HTH gntR-type domain-containing protein n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A2W4SYN0_9PROT) HSP 1 Score: 101 bits (251), Expect = 1.340e-22 Identity = 63/137 (45.99%), Postives = 85/137 (62.04%), Query Frame = 1
Query: 25 STVDRIMHHIKDDLKRGRLAPGQRLIESELQQAVVASRDSVREDLRKLAADGLIEIHLHKGARVRRLLRTEVESLYDIREVLEGLAARLAAQHMRAPAFRKQVAAIEAAYDRADDGS-ARAYMGYNEAFHRAILDLS 432
+ V+RI+ I+ +K GR APGQRLIES+L QA+ SR +RE + +LA DGL++I ++G VR L R EV S+ IREVLEGLAARLAA H+ + R++ + S A Y+ NE FH I+ LS
Sbjct: 139 TAVERIVEEIRRGIKEGRYAPGQRLIESDLTQALGVSRGPLREAMSRLAGDGLVKIERNRGVTVRALTREEVRSISTIREVLEGLAARLAAAHIHEGSNREEFKRLWNEMQSVQVSSNAMEYVVANERFHTLIVRLS 275
BLAST of mRNA_P-wetherbeei_contig13446.2.1 vs. uniprot
Match: A0A380WBA1_AFIFE (Uncharacterized HTH-type transcriptional regulator ydfH n=4 Tax=Bradyrhizobiaceae TaxID=41294 RepID=A0A380WBA1_AFIFE) HSP 1 Score: 98.2 bits (243), Expect = 2.580e-22 Identity = 59/146 (40.41%), Postives = 90/146 (61.64%), Query Frame = 1
Query: 1 EDAEPANASTVDRIMHHIKDDLKRGRLAPGQRLIESELQQAVVASRDSVREDLRKLAADGLIEIHLHKGARVRRLLRTEVESLYDIREVLEGLAARLAAQHMRAPAFRKQVAAIEAAYDRADDGSARA---YMGYNEAFHRAILDL 429
E+ TVD I+ +++ + GR+ PGQRL+ ++L + + SR S+RE L++L+A+GL++I ++GA VRRL R +V L+ IR LEGL ARLAA+H+ RKQ A+ + DGS RA +M N +HR I+ +
Sbjct: 9 EEVSQRRGQTVDDIIGRVRNAILAGRIVPGQRLVANDLVEQLGVSRGSIREALQRLSAEGLVDITPNRGAMVRRLSREQVRDLFQIRINLEGLGARLAAEHIHEADHRKQFLAVW--NEVKPDGSERAWSLFMQQNRLYHRTIVSI 152
BLAST of mRNA_P-wetherbeei_contig13446.2.1 vs. uniprot
Match: A0A556AJ14_9BURK (GntR family transcriptional regulator n=2 Tax=Verticiella sediminum TaxID=1247510 RepID=A0A556AJ14_9BURK) HSP 1 Score: 98.6 bits (244), Expect = 2.760e-22 Identity = 60/134 (44.78%), Postives = 84/134 (62.69%), Query Frame = 1
Query: 31 VDRIMHHIKDDLKRGRLAPGQRLIESELQQAVVASRDSVREDLRKLAADGLIEIHLHKGARVRRLLRTEVESLYDIREVLEGLAARLAAQHMRAPAFRKQVAAIEAAYDRADDGSARAYMGYNEAFHRAILDLS 432
+DRI I D GR APGQRLIE++L + + ASR SVRE LR+L A+G++++ ++GA VR+L R + L+ +RE LEGLAAR+AA+ + A + A AA ADD A A+ N H+ I+D S
Sbjct: 43 IDRIREAIVD----GRYAPGQRLIEADLMRELQASRGSVREALRRLGAEGIVDLVPNRGAVVRKLSRKDFCDLFRMREALEGLAARMAAERVAAHGLAEPFLAAAAATAEADDQGAAAFSRQNRTLHQLIVDFS 172 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig13446.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig13446.2.1 >prot_P-wetherbeei_contig13446.2.1 ID=prot_P-wetherbeei_contig13446.2.1|Name=mRNA_P-wetherbeei_contig13446.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=158bp EDAEPANASTVDRIMHHIKDDLKRGRLAPGQRLIESELQQAVVASRDSVRback to top mRNA from alignment at P-wetherbeei_contig13446:1119..1592+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig13446.2.1 ID=mRNA_P-wetherbeei_contig13446.2.1|Name=mRNA_P-wetherbeei_contig13446.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=474bp|location=Sequence derived from alignment at P-wetherbeei_contig13446:1119..1592+ (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig13446:1119..1592+ >mRNA_P-wetherbeei_contig13446.2.1 ID=mRNA_P-wetherbeei_contig13446.2.1|Name=mRNA_P-wetherbeei_contig13446.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=474bp|location=Sequence derived from alignment at P-wetherbeei_contig13446:1119..1592+ (Phaeothamnion wetherbeei SAG_119_79)back to top |