mRNA_P-wetherbeei_contig13441.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig13441.1.1
Unique NamemRNA_P-wetherbeei_contig13441.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig13441.1.1 vs. uniprot
Match: A0A836CCY2_9STRA (NADH-ubiquinone oxidoreductase-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCY2_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 7.870e-15
Identity = 40/78 (51.28%), Postives = 51/78 (65.38%), Query Frame = 1
Query:    1 MSSGYGVRGSVGRCYHVYSNFMECVVSQGVQRQQTVRAECVDHRDDYLECLHHRKEYERHQKIQEQKRKNAEELANGN 234
            MSSG+GVRG VGRCY ++S   +C+       Q   R +C D RDDY ECLHH KE++R + I EQ+ KNAE L + N
Sbjct:    1 MSSGFGVRGGVGRCYPIFSALNQCIA------QADNREDCSDFRDDYFECLHHFKEFQRAKVINEQQAKNAEILKHNN 72          
BLAST of mRNA_P-wetherbeei_contig13441.1.1 vs. uniprot
Match: A0A7S3V495_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3V495_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 7.480e-13
Identity = 34/70 (48.57%), Postives = 47/70 (67.14%), Query Frame = 1
Query:    1 MSSGYGVRGSVGRCYHVYSNFMECVVSQGVQRQQTVRAECVDHRDDYLECLHHRKEYERHQKIQEQKRKN 210
            MSSGYG+RG +GRCY  ++ + EC+ ++      +   +C D R+DY ECLHHRKEYER   I+EQ + N
Sbjct:   31 MSSGYGIRGGIGRCYPFFAGYKECLKTETT----STGLDCKDFREDYFECLHHRKEYERIDTIKEQAKLN 96          
BLAST of mRNA_P-wetherbeei_contig13441.1.1 vs. uniprot
Match: R7QEA4_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QEA4_CHOCR)

HSP 1 Score: 66.2 bits (160), Expect = 4.320e-11
Identity = 31/70 (44.29%), Postives = 46/70 (65.71%), Query Frame = 1
Query:    1 MSSGYGVRGSVGRCYHVYSNFMECVVSQGVQRQQTVRAECVDHRDDYLECLHHRKEYERHQKIQEQKRKN 210
            M+SG+G+ G  GRCY  + +F +C+    +       A+C   R+DY+ECLHHRKE ER Q+I++Q +KN
Sbjct:    1 MASGFGINGGPGRCYSFWLDFTKCLADAAIP------ADCAPAREDYIECLHHRKESERRQQIEKQAQKN 64          
BLAST of mRNA_P-wetherbeei_contig13441.1.1 vs. uniprot
Match: A9RD10_PHYPA (Predicted protein n=2 Tax=Physcomitrium patens TaxID=3218 RepID=A9RD10_PHYPA)

HSP 1 Score: 65.1 bits (157), Expect = 1.100e-10
Identity = 32/71 (45.07%), Postives = 44/71 (61.97%), Query Frame = 1
Query:    1 MSSGYGVRGSVGRCYHVYSNFMECVVSQGVQRQQTVRAECVDHRDDYLECLHHRKEYERHQKIQEQKRKNA 213
            M+SG+GV G  GRCY V+ +F +C+         ++ AEC   RDDY ECLHHRKEY R   I +++ + A
Sbjct:    1 MASGFGVTGKKGRCYDVWMDFSDCM------SHCSMPAECTSRRDDYFECLHHRKEYSRMNAINKERERQA 65          
BLAST of mRNA_P-wetherbeei_contig13441.1.1 vs. uniprot
Match: A0A7I4A4F7_PHYPA (Uncharacterized protein n=2 Tax=Physcomitrium patens TaxID=3218 RepID=A0A7I4A4F7_PHYPA)

HSP 1 Score: 65.1 bits (157), Expect = 1.320e-10
Identity = 32/71 (45.07%), Postives = 44/71 (61.97%), Query Frame = 1
Query:    1 MSSGYGVRGSVGRCYHVYSNFMECVVSQGVQRQQTVRAECVDHRDDYLECLHHRKEYERHQKIQEQKRKNA 213
            M+SG+GV G  GRCY V+ +F +C+         ++ AEC   RDDY ECLHHRKEY R   I +++ + A
Sbjct:    1 MASGFGVTGKKGRCYDVWMDFSDCM------SHCSMPAECTSRRDDYFECLHHRKEYSRMNAINKERERQA 65          
BLAST of mRNA_P-wetherbeei_contig13441.1.1 vs. uniprot
Match: A4S5C5_OSTLU (Uncharacterized protein n=1 Tax=Ostreococcus lucimarinus (strain CCE9901) TaxID=436017 RepID=A4S5C5_OSTLU)

HSP 1 Score: 65.1 bits (157), Expect = 1.610e-10
Identity = 33/76 (43.42%), Postives = 48/76 (63.16%), Query Frame = 1
Query:    1 MSSGYGVRGSVGRCYHVYSNFMECVVSQGVQRQQTVRAECVDHRDDYLECLHHRKEYERHQKIQEQKRKNAEELAN 228
            M+SG+G RGS GRC  V+  F +CV       +   R+ C   R+DY+ECLHH+KEY R  +I+ ++++  EE AN
Sbjct:    1 MASGFGARGSEGRCAPVWREFTKCV------NEADDRSACFKFREDYVECLHHKKEYRRENEIENERQRRNEEHAN 70          
BLAST of mRNA_P-wetherbeei_contig13441.1.1 vs. uniprot
Match: A0A1C7NTF1_9FUNG (NADH dehydrogenase [ubiquinone] iron-sulfur protein 5-A n=2 Tax=Mucorineae TaxID=1344963 RepID=A0A1C7NTF1_9FUNG)

HSP 1 Score: 64.7 bits (156), Expect = 2.620e-10
Identity = 32/75 (42.67%), Postives = 48/75 (64.00%), Query Frame = 1
Query:    1 MSSGYGVRGSVGRCYHVYSNFMECVVSQGVQRQQTVRAECVDHRDDYLECLHHRKEYERHQKIQEQKRKNAEELA 225
            M+SG+G+ G  GRC+H +  F +C  S  + +Q      C+D RDDYLECLHH KE+ R  +I+ ++ K A++ A
Sbjct:    1 MASGFGLDGGRGRCFHFWQEFNKCYASADLPQQ------CLDQRDDYLECLHHTKEFARITRIKTEELKQAQKKA 69          
BLAST of mRNA_P-wetherbeei_contig13441.1.1 vs. uniprot
Match: A0A8H7VVW7_9FUNG (Uncharacterized protein n=1 Tax=Thamnidium elegans TaxID=101142 RepID=A0A8H7VVW7_9FUNG)

HSP 1 Score: 64.7 bits (156), Expect = 2.620e-10
Identity = 32/72 (44.44%), Postives = 46/72 (63.89%), Query Frame = 1
Query:    1 MSSGYGVRGSVGRCYHVYSNFMECVVSQGVQRQQTVRAECVDHRDDYLECLHHRKEYERHQKIQEQKRKNAE 216
            M+SG+G+ G  GRC+H +  F +C  S  + +Q      C+D RDDYLECLHH KE+ R  +I+ ++ K AE
Sbjct:    1 MASGFGLDGGRGRCFHFWQEFNKCYASADLPQQ------CLDQRDDYLECLHHTKEFARITRIKTEELKQAE 66          
BLAST of mRNA_P-wetherbeei_contig13441.1.1 vs. uniprot
Match: A0A0B7MYE7_9FUNG (Uncharacterized protein n=7 Tax=Mucoraceae TaxID=34489 RepID=A0A0B7MYE7_9FUNG)

HSP 1 Score: 63.5 bits (153), Expect = 7.380e-10
Identity = 31/72 (43.06%), Postives = 46/72 (63.89%), Query Frame = 1
Query:    1 MSSGYGVRGSVGRCYHVYSNFMECVVSQGVQRQQTVRAECVDHRDDYLECLHHRKEYERHQKIQEQKRKNAE 216
            M+SG+G+ G  GRC+H +  F +C  +  + +Q      C+D RDDYLECLHH KE+ R  +I+ ++ K AE
Sbjct:    1 MASGFGLDGGRGRCFHFWQEFNKCYATADLPQQ------CLDQRDDYLECLHHTKEFARITRIKTEELKQAE 66          
BLAST of mRNA_P-wetherbeei_contig13441.1.1 vs. uniprot
Match: A0A176WFV0_MARPO (Uncharacterized protein n=2 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A176WFV0_MARPO)

HSP 1 Score: 62.8 bits (151), Expect = 8.380e-10
Identity = 35/86 (40.70%), Postives = 47/86 (54.65%), Query Frame = 1
Query:    1 MSSGYGVRGSVGRCYHVYSNFMECVVSQGVQRQQTVRAECVDHRDDYLECLHHRKEYERHQKIQEQKRKNAEELANGN-----GHH 243
            M+SG+G+ G  GRCY  + +F EC+       +  V  +C   RDDY ECLHHRKEY R   I ++K + A    +G      GHH
Sbjct:    1 MASGFGIHGGKGRCYDTWMDFSECM------SRCAVPGDCAALRDDYFECLHHRKEYSRINAINKEKERQAALHKDGGKDQKAGHH 80          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig13441.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CCY2_9STRA7.870e-1551.28NADH-ubiquinone oxidoreductase-like protein n=1 Ta... [more]
A0A7S3V495_9STRA7.480e-1348.57Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
R7QEA4_CHOCR4.320e-1144.29Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
A9RD10_PHYPA1.100e-1045.07Predicted protein n=2 Tax=Physcomitrium patens Tax... [more]
A0A7I4A4F7_PHYPA1.320e-1045.07Uncharacterized protein n=2 Tax=Physcomitrium pate... [more]
A4S5C5_OSTLU1.610e-1043.42Uncharacterized protein n=1 Tax=Ostreococcus lucim... [more]
A0A1C7NTF1_9FUNG2.620e-1042.67NADH dehydrogenase [ubiquinone] iron-sulfur protei... [more]
A0A8H7VVW7_9FUNG2.620e-1044.44Uncharacterized protein n=1 Tax=Thamnidium elegans... [more]
A0A0B7MYE7_9FUNG7.380e-1043.06Uncharacterized protein n=7 Tax=Mucoraceae TaxID=3... [more]
A0A176WFV0_MARPO8.380e-1040.70Uncharacterized protein n=2 Tax=Marchantia polymor... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig13441contigP-wetherbeei_contig13441:666..1597 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog242159.ABO98876
PFAMsNdufs5
Model size596
Max annot lvl3041|Chlorophyta
KEGG koko:K03938
KEGG TC3.D.1.6
KEGG Pathwayko00190,ko01100,ko04714,ko04723,ko04932,ko05010,ko05012,ko05016,map00190,map01100,map04714,map04723,map04932,map05010,map05012,map05016
KEGG ModuleM00143
Hectar predicted targeting categoryother localisation
Exons3
Evalue6.67e-13
EggNOG OGs2CT4Y@1|root,2S4B1@2759|Eukaryota,37W3Q@33090|Viridiplantae,34NKF@3041|Chlorophyta
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-05_004000.1
DescriptionNADH dehydrogenase ubiquinone iron-sulfur protein
Cds size246
COG categoryS
BRITEko00000,ko00001,ko00002
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185985.600775-UTR-P-wetherbeei_contig13441:665..10151683185985.600775-UTR-P-wetherbeei_contig13441:665..1015Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig13441 666..1015 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185985.6110299-CDS-P-wetherbeei_contig13441:1015..10961683185985.6110299-CDS-P-wetherbeei_contig13441:1015..1096Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13441 1016..1096 -
1683185985.6195238-CDS-P-wetherbeei_contig13441:1323..13951683185985.6195238-CDS-P-wetherbeei_contig13441:1323..1395Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13441 1324..1395 -
1683185985.628711-CDS-P-wetherbeei_contig13441:1504..15971683185985.628711-CDS-P-wetherbeei_contig13441:1504..1597Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13441 1505..1597 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig13441.1.1prot_P-wetherbeei_contig13441.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig13441 1016..1597 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig13441.1.1

>prot_P-wetherbeei_contig13441.1.1 ID=prot_P-wetherbeei_contig13441.1.1|Name=mRNA_P-wetherbeei_contig13441.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=82bp
MSSGYGVRGSVGRCYHVYSNFMECVVSQGVQRQQTVRAECVDHRDDYLEC
LHHRKEYERHQKIQEQKRKNAEELANGNGHH*
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mRNA from alignment at P-wetherbeei_contig13441:666..1597-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig13441.1.1 ID=mRNA_P-wetherbeei_contig13441.1.1|Name=mRNA_P-wetherbeei_contig13441.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=932bp|location=Sequence derived from alignment at P-wetherbeei_contig13441:666..1597- (Phaeothamnion wetherbeei SAG_119_79)
ATGTCGTCCGGATACGGCGTGCGAGGCTCCGTCGGACGCTGCTACCATGT CTACTCGAACTTTATGGAATGTGTGGTGAGTCAAGGAGTTCAGGTCTCCT CATTTCTTTGCACGCTTGTTTTTCCCCTCTCTCTTCGGGCTCTTTCAGAC GCTTATGTCCACTTCTACGCGGTTGTCTTGCTAACTGTCGCTCTTTCTGC AGAGACAACAAACTGTGCGAGCGGAATGCGTCGATCATCGGGACGACTAC CTCGAATGCTTGCACCATCGAAAGGTAGGAGACAACGGCTTGTTGGCCGC GTTAAGCTATGCAGCTTGGTTTCGGATAAGGCGAAGCAACGCGAGAAGTG GAAAGCGACTTTGCCTAAAGACATGGGTACCATGTTGTAAGACCGCTTGG TAGGGCACTTTGGACATCGCGGATTGTACCTTTGCACCAATTGCTAATCA TCGCTTGCTGATACCGTTAAAGTTTTTCTACACACGTCCTGCGTTCGGCA GGAGTACGAGCGCCATCAGAAGATCCAGGAGCAGAAGAGAAAGAACGCCG AAGAGCTTGCCAACGGAAACGGGCATCATTAGTGCAGCGTCGCTTTGCTG TGAAAAGACAACGCACAGAATGACTGATTCACCCTCGCCGAGCTTTGCTT GGGCGCTCTGCGGCGTCATCTCGGCGGGATTCTGTTTCTGCGGGTGACTA GCTGATCCCACAGTCTAGTCATATGCCCTATCAGGCAGCGACGTAGTAGC CCTATCAGGCAGCAATGTAGTAAGGCGAGGCGATGGAATACAAAGATTTG CCAGCATATCTGGTTCAGGCCTGACGTTTCATTTGCCCTGGAAATAGCAA GGCGCGGCGCCGCATTAGGGAGCTGCCGGCATTCATCTGCGGCACAAGCC CCCGGAAGAAAATATGAACAATTGAACGCCTC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig13441:666..1597-

>mRNA_P-wetherbeei_contig13441.1.1 ID=mRNA_P-wetherbeei_contig13441.1.1|Name=mRNA_P-wetherbeei_contig13441.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=246bp|location=Sequence derived from alignment at P-wetherbeei_contig13441:666..1597- (Phaeothamnion wetherbeei SAG_119_79)
ATGTCGTCCGGATACGGCGTGCGAGGCTCCGTCGGACGCTGCTACCATGT
CTACTCGAACTTTATGGAATGTGTGGTGAGTCAAGGAGTTCAGAGACAAC
AAACTGTGCGAGCGGAATGCGTCGATCATCGGGACGACTACCTCGAATGC
TTGCACCATCGAAAGGAGTACGAGCGCCATCAGAAGATCCAGGAGCAGAA
GAGAAAGAACGCCGAAGAGCTTGCCAACGGAAACGGGCATCATTAG
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