mRNA_P-wetherbeei_contig13439.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig13439.1.1
Unique NamemRNA_P-wetherbeei_contig13439.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig13439.1.1 vs. uniprot
Match: D8LHT5_ECTSI (Hypothetical leucine rich repeat protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LHT5_ECTSI)

HSP 1 Score: 200 bits (508), Expect = 1.530e-55
Identity = 118/256 (46.09%), Postives = 153/256 (59.77%), Query Frame = 1
Query:    1 VTPNVRNRLAGHLCRRLKLTTGTLRRLATGGSEGALATELALPDCSRIEPQQMEATLLECRESLEVLRLGTCGCCFTDHTAAALVKAGGMPRLETLSLHGCYRLSDTSLASLLRTLPALRAVELPCDSRLGRAGLAALA--EGPLGGRLTGLSVNQCDQLDAADLQFLGSFPALEILRAAGLPALTDAVLEAALARCGKSLRLLDIEDCEGLTDASLTAVRRHCGSLTELHLGMNPSFSNEALLGLFAFKDAMAAA 762
            V+P VRN LA  +CR+LKLTT  L+RL+  G      TE+ LPDCSRIEP QM  ++L+CR +L VLRLGTCG C  D T  AL KAGG+PRLE  SL G Y+L+D  +  LL   P L  +EL  +SR+    L  +   E P+G  LT LS+  C QL   +L+ L     LE L  +G+  LTD +L   L  CG  LR LDI DC  LTDA+L A+   CG L  L+LG+ P  ++ A+  +F +  + A A
Sbjct:  326 VSPEVRNHLAAVMCRQLKLTTEALQRLSEPG-----VTEIILPDCSRIEPDQMRNSILQCRRTLRVLRLGTCGRCVGDATLEALTKAGGVPRLEMASLAGTYQLTDAGVLELLSCCPRLTGLELSANSRITLKALEKMVDKERPIGMALTTLSLTDCIQLGPDELEPLKGMACLERLSLSGVIKLTDGILLQILEACGGRLRHLDISDCTDLTDATLKAIGERCGVLESLNLGLCPLLTSGAIQEIFQYSGSSAEA 576          
BLAST of mRNA_P-wetherbeei_contig13439.1.1 vs. uniprot
Match: A0A836CJL7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJL7_9STRA)

HSP 1 Score: 149 bits (375), Expect = 5.150e-37
Identity = 110/293 (37.54%), Postives = 140/293 (47.78%), Query Frame = 1
Query:    1 VTPNVRNRLAGHLCRRLKLTTGTLRRLATGGSEGALATELALPDCSRIEPQQME----------------------------------------ATLLECRESLEVLRLGTCGCCFTDHTAAALVKAGGMPRLETLSLHGCYRLSDTSLASLLRTLPALRAVELPCDSRLGRAGLAALAEGPLGGRLTGLSVNQCDQLDAADLQFLGSFPALEILRAAGLPALTDAVLEAALARCGKSLRLLDIEDCEGLTDASLTAVRRHCGSLTELHLGMNPSFSNEALLGLFAFKDAMAA 759
            VTP VRNRL   LCR+L+LT   L RLA  G       E+ LPDCSRI+ QQM+                                         TLL CRE+L  L L  CG CFT  T AAL  AGG+P +  L+L G Y L DT+L +LL   P LR + L   +RLG  G AA+A+   G  L  LS+  C+ +DAA L  +    AL  L  +G+ A+TD  L   L+ CG+ L  L +  C+  TD ++ A+         L L   P  +  AL  LF   DA AA
Sbjct:  391 VTPEVRNRLGALLCRQLQLTPEVLSRLAAPG-----VAEVVLPDCSRIDAQQMQXXXXXXXXXXXXXXQPLPRSAAVVPRHAVRFDHTMASLGVTTLLRCRETLAALELRMCGRCFTGATVAALASAGGLPSVTRLALTGTYLLPDTALDALLAAAPRLRHLTLAQSARLGARGAAAIAD-RCGATLQSLSLASCEGVDAAALAHIARCGALTALDLSGVAAVTDEALARVLSACGEKLEALRVAHCDXXTDGAVQAI---------LSLADVPLVTGAALAVLFG--DAAAA 666          
BLAST of mRNA_P-wetherbeei_contig13439.1.1 vs. uniprot
Match: A0A7S0NT00_9EUKA (Hypothetical protein n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0NT00_9EUKA)

HSP 1 Score: 117 bits (292), Expect = 8.550e-27
Identity = 93/235 (39.57%), Postives = 123/235 (52.34%), Query Frame = 1
Query:    1 VTPNVRNRLAGHLCRRLKLTTGTLRRLATGGSEGALATELALPDCSRIEPQQMEATL---LECRESLEVLRLGTCGCCFTDHTAAALVKAGGMPRLETLSLHGCYRLSDTSLASLLRTLPA-LRAVELPCDSRLGRAGLAALAEGPLGGRLTGLSVNQCDQLDAADLQFLGSFPALEILRAAGLPALTDAVLEAALARCGKSLRLLDIEDCEGLTDASLTAVRRHCGSLTELHLG 693
            +TP +++ +A  LC+  KLT+ +L   A      A  TEL +PDC  IEP  + A L   ++    L V+ LG CG C T H A+ L  A     L +L L GCYRLSD +L SLLR     L  + L  +S+L    + A+ E  L  +L  L++    QL +A L  L     LE L   G+  LTD VL   L  C  +L  L +EDC  LTDA + AVR  CGSL +L LG
Sbjct:   51 LTPAIQHDIATALCKVRKLTSSSLALFAPAD---APLTELIIPDCHAIEPDDLAAALAPHVDHHSRLAVVHLGFCGRCVTPHVASLLEHAAA---LHSLHLDGCYRLSDDALVSLLRARGGGLNTLFLSANSQLTATAVQAIGEHCL--QLRRLALENLAQLPSAALLPLRGLLHLERLSLRGVCMLTDEVLVELLGGCSGTLTHLCVEDCCLLTDAGVAAVRS-CGSLRDLDLG 276          
BLAST of mRNA_P-wetherbeei_contig13439.1.1 vs. uniprot
Match: A0A4S8IK87_MUSBA (F-box domain-containing protein n=2 Tax=Musa TaxID=4640 RepID=A0A4S8IK87_MUSBA)

HSP 1 Score: 55.5 bits (132), Expect = 4.300e-5
Identity = 46/161 (28.57%), Postives = 77/161 (47.83%), Query Frame = 1
Query:  265 GMPRLETLSLHGCYRLSDTSLASLLRTLPALRAVELPCDSRLGRAGLAALAEGPLGGRLTGLSVNQCDQLD-----AADLQFLGSFPALEILRAAGLPALTDAVLEAALARCGKSLRLLDIEDCEGLTDASLTAVRRHCGSLTELHLGMNPSFSNEALLGL 732
            G+ +L+++S++ C  L+D +L ++ +  P L+ + +     L  AGL A A       L  L +  C+Q+       A L+      +L ++R  GL    D   E +      SLR L I+DC G+T AS+  V R C  L  + L      ++E+L+ L
Sbjct:  356 GLQKLKSISINCCNGLTDAALQAIAKGSPFLKQLFVCKSCYLSDAGLIAFAG--TAKALESLHLEDCNQITLMGILGALLKRSAELKSLSLVRCLGLK---DISFEFSQLPSCMSLRSLTIQDCPGVTSASIQVVGRICPQLQNIDLSGQVGVTDESLIPL 511          
BLAST of mRNA_P-wetherbeei_contig13439.1.1 vs. uniprot
Match: S8BZR3_9LAMI (F-box family protein (Fragment) n=1 Tax=Genlisea aurea TaxID=192259 RepID=S8BZR3_9LAMI)

HSP 1 Score: 54.3 bits (129), Expect = 9.700e-5
Identity = 52/161 (32.30%), Postives = 74/161 (45.96%), Query Frame = 1
Query:  277 LETLSLHGCYRLSDTSLASLLRTLPALRAVELP-CDSRLGRAGLAALAEGPLGGRLTGLSVNQC----DQLDAADLQFLGSFPALEILRAAGLPALTDA-----------VLEAALARC-----------------GKSLRLLDIEDCEGLTDASLTAVRR 660
            L  L L  C  L D +L S+  +LP LR + L  CD  +  AG++ L+ GP G  L  LS+  C    D+       F GS  +L  L  + LP ++D+           V E  + +C                 G SLRLLD+ +C G+T+ASL  +RR
Sbjct:  389 LSVLDLRECRSLGDEALRSV-SSLPGLRTLLLDGCD--VSDAGISYLSTGPAGRNLVSLSLRGCRRLTDRCIGGGPMFDGSVSSLRELDLSNLPNVSDSAVLALARGRVPVTELRVRQCXXXXXXXXXXXXSMRCRGGSLRLLDVYNCGGMTEASLRWLRR 546          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig13439.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D8LHT5_ECTSI1.530e-5546.09Hypothetical leucine rich repeat protein n=2 Tax=E... [more]
A0A836CJL7_9STRA5.150e-3737.54Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S0NT00_9EUKA8.550e-2739.57Hypothetical protein n=1 Tax=Calcidiscus leptoporu... [more]
A0A4S8IK87_MUSBA4.300e-528.57F-box domain-containing protein n=2 Tax=Musa TaxID... [more]
S8BZR3_9LAMI9.700e-532.30F-box family protein (Fragment) n=1 Tax=Genlisea a... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig13439contigP-wetherbeei_contig13439:178..1469 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LHT5
PFAMsLRR_6,Myb_DNA-binding
Model size804
Max annot lvl2759|Eukaryota
KEGG rclassRC00062,RC00189,RC00676,RC01052
KEGG koko:K00276,ko:K10272,ko:K15082
KEGG ReactionR02382,R02529,R02613,R03139,R04027,R04300,R06154,R06740
KEGG Pathwayko00260,ko00350,ko00360,ko00410,ko00950,ko00960,ko01100,ko01110,map00260,map00350,map00360,map00410,map00950,map00960,map01100,map01110
Hectar predicted targeting categorymitochondrion
Exons3
Evalue2.51e-56
EggNOG OGsKOG1947@1|root,KOG1947@2759|Eukaryota
EC1.4.3.21
DescriptionF-box LRR-repeat protein
Cds size804
COG categoryB
BRITEko00000,ko00001,ko01000,ko03400,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185985.3626416-CDS-P-wetherbeei_contig13439:177..4851683185985.3626416-CDS-P-wetherbeei_contig13439:177..485Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13439 178..485 +
1683185985.374386-CDS-P-wetherbeei_contig13439:714..10211683185985.374386-CDS-P-wetherbeei_contig13439:714..1021Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13439 715..1021 +
1683185985.3836744-CDS-P-wetherbeei_contig13439:1280..14691683185985.3836744-CDS-P-wetherbeei_contig13439:1280..1469Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13439 1281..1469 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig13439.1.1prot_P-wetherbeei_contig13439.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig13439 178..1469 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig13439.1.1

>prot_P-wetherbeei_contig13439.1.1 ID=prot_P-wetherbeei_contig13439.1.1|Name=mRNA_P-wetherbeei_contig13439.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=268bp
VTPNVRNRLAGHLCRRLKLTTGTLRRLATGGSEGALATELALPDCSRIEP
QQMEATLLECRESLEVLRLGTCGCCFTDHTAAALVKAGGMPRLETLSLHG
CYRLSDTSLASLLRTLPALRAVELPCDSRLGRAGLAALAEGPLGGRLTGL
SVNQCDQLDAADLQFLGSFPALEILRAAGLPALTDAVLEAALARCGKSLR
LLDIEDCEGLTDASLTAVRRHCGSLTELHLGMNPSFSNEALLGLFAFKDA
MAAAAKAAQAEAAAAAAA
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mRNA from alignment at P-wetherbeei_contig13439:178..1469+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig13439.1.1 ID=mRNA_P-wetherbeei_contig13439.1.1|Name=mRNA_P-wetherbeei_contig13439.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1292bp|location=Sequence derived from alignment at P-wetherbeei_contig13439:178..1469+ (Phaeothamnion wetherbeei SAG_119_79)
GTCACGCCCAATGTGCGGAACCGCTTAGCGGGTCACCTCTGTCGCCGCCT CAAGCTGACCACCGGCACGCTCCGGCGGCTGGCGACGGGAGGCAGCGAGG GCGCCCTTGCCACCGAGCTGGCGCTGCCGGACTGCAGCCGGATTGAGCCG CAGCAGATGGAAGCGACACTGCTGGAGTGCCGCGAATCGCTGGAGGTGCT GCGGCTGGGCACCTGCGGCTGCTGCTTCACGGACCACACGGCGGCAGCGC TCGTCAAGGCCGGTGGGATGCCGCGCCTCGAGACGTTGTCGCTGCACGGC TGCTACCGGTAAGGGCGGCAGGCGGCGCTGTGAAAGCAAGCATGGCAAAT TGCGTCGTCGTGGTTTCGCACTTTCACGTCCCTTTCACCTTCTTGGGGAA CCTCTCCTCCAGCGATGAATACGCCAGACTCACGCCATTGGCTAACCGCT CTTGCCCTCCACTGCTCCCGGCTGAACACTTACCGCCGATGCGGGGCCGC GTCTTGCCATTTTCGTCCTACTGCCCTATCCAAGCAGTCTCTCAGACACC TCGCTGGCGTCGCTCCTGCGGACGCTGCCGGCCCTCCGTGCCGTAGAGCT GCCCTGTGACTCGCGCCTTGGCCGTGCGGGGCTGGCGGCGCTCGCGGAGG GACCGCTGGGCGGGCGGCTGACGGGGCTGTCGGTCAACCAGTGCGACCAG CTGGACGCGGCCGACCTGCAGTTTCTGGGGAGCTTCCCGGCGCTAGAGAT CCTGCGGGCGGCGGGGCTGCCGGCGTTGACGGACGCCGTGCTGGAGGCGG CGCTGGCGCGCTGCGGCAAATCACTGCGGCTGCTCGACATAGAGGTGCAT TTTGTTGGATTTTAGCGCGCTCAAGGTTTATTTGTCTTGGGTAAGGGAGG TTCGGGAAACGAGGCCGAGTGTTTGGAAAAGTACATATGTCGCGTTCGGC CATCGCTCCTTCTTCGGCTTCCGTCCTACTTGTATTTCTGCTGAGTCGAA GCAGTTATTGCTCCCCATCGGTTCTACCGTCGCTCTTCAACTCTTCTTAC TGCCATCTCTCTGCTTCCATTCCTCCGCCCCTTTCTTTCTTCTCTCAAAA AAGGACTGCGAGGGCCTGACGGATGCATCGCTGACTGCCGTCCGGCGCCA CTGCGGCAGCCTGACGGAGCTCCACCTCGGCATGAACCCGTCCTTCTCCA ACGAGGCGCTCCTCGGCCTCTTCGCCTTCAAGGACGCCATGGCAGCCGCG GCCAAGGCGGCCCAGGCCGAGGCAGCAGCGGCGGCGGCAGCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig13439:178..1469+

>mRNA_P-wetherbeei_contig13439.1.1 ID=mRNA_P-wetherbeei_contig13439.1.1|Name=mRNA_P-wetherbeei_contig13439.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=804bp|location=Sequence derived from alignment at P-wetherbeei_contig13439:178..1469+ (Phaeothamnion wetherbeei SAG_119_79)
GTCACGCCCAATGTGCGGAACCGCTTAGCGGGTCACCTCTGTCGCCGCCT
CAAGCTGACCACCGGCACGCTCCGGCGGCTGGCGACGGGAGGCAGCGAGG
GCGCCCTTGCCACCGAGCTGGCGCTGCCGGACTGCAGCCGGATTGAGCCG
CAGCAGATGGAAGCGACACTGCTGGAGTGCCGCGAATCGCTGGAGGTGCT
GCGGCTGGGCACCTGCGGCTGCTGCTTCACGGACCACACGGCGGCAGCGC
TCGTCAAGGCCGGTGGGATGCCGCGCCTCGAGACGTTGTCGCTGCACGGC
TGCTACCGTCTCTCAGACACCTCGCTGGCGTCGCTCCTGCGGACGCTGCC
GGCCCTCCGTGCCGTAGAGCTGCCCTGTGACTCGCGCCTTGGCCGTGCGG
GGCTGGCGGCGCTCGCGGAGGGACCGCTGGGCGGGCGGCTGACGGGGCTG
TCGGTCAACCAGTGCGACCAGCTGGACGCGGCCGACCTGCAGTTTCTGGG
GAGCTTCCCGGCGCTAGAGATCCTGCGGGCGGCGGGGCTGCCGGCGTTGA
CGGACGCCGTGCTGGAGGCGGCGCTGGCGCGCTGCGGCAAATCACTGCGG
CTGCTCGACATAGAGGACTGCGAGGGCCTGACGGATGCATCGCTGACTGC
CGTCCGGCGCCACTGCGGCAGCCTGACGGAGCTCCACCTCGGCATGAACC
CGTCCTTCTCCAACGAGGCGCTCCTCGGCCTCTTCGCCTTCAAGGACGCC
ATGGCAGCCGCGGCCAAGGCGGCCCAGGCCGAGGCAGCAGCGGCGGCGGC
AGCG
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