mRNA_P-wetherbeei_contig13436.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig13436.1.1
Unique NamemRNA_P-wetherbeei_contig13436.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
[Close]
BLAST of mRNA_P-wetherbeei_contig13436.1.1 vs. uniprot
Match: A0A6H5L0Z8_9PHAE (DRY_EERY domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0Z8_9PHAE)

HSP 1 Score: 77.0 bits (188), Expect = 2.110e-15
Identity = 47/95 (49.47%), Postives = 57/95 (60.00%), Query Frame = 1 
Query:    4 RKERQRALLATRG-DISRSLIVEGRGCRLYREAGDHAASDEAALMPWKGRLDTMIDRFDGRALLDVLP-DESDTACAGGGGDEPKALEAFLNFER 282
            RKER +        D  +SLI+EGR C+LYR+    A   E ALMPW GR D +IDRFD RA+LD++P    DT    G   E K LE FL+FER
Sbjct:   25 RKERMKQFQRAHSRDHHQSLIIEGRPCKLYRDPAAGAVV-EGALMPWNGRRDVLIDRFDARAVLDMVPLSPKDT----GDHREKKGLETFLSFER 114
[Close]
BLAST of mRNA_P-wetherbeei_contig13436.1.1 vs. uniprot
Match: D7FX73_ECTSI (DRY_EERY domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX73_ECTSI)

HSP 1 Score: 77.4 bits (189), Expect = 1.480e-14
Identity = 47/96 (48.96%), Postives = 57/96 (59.38%), Query Frame = 1 
Query:    4 RKERQRALLATRG-DISRSLIVEGRGCRLYREAGDHAASDEAALMPWKGRLDTMIDRFDGRALLDVLPDESDTACAGGGGD--EPKALEAFLNFER 282
            RKER +        D  +SLI+EGR C+LYR+    A   E ALMPW GR D +IDRFD RA+LD++P         G GD  E K LE FL+FER
Sbjct:   25 RKERMKQFQRAHSRDHHQSLIIEGRPCKLYRDPAAGAVV-EGALMPWNGRRDVLIDRFDARAVLDMVP-----LSPKGTGDHREKKGLETFLSFER 114
[Close]
BLAST of mRNA_P-wetherbeei_contig13436.1.1 vs. uniprot
Match: A0A5E4E422_PRUDU (PREDICTED: CLK4-associating n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A5E4E422_PRUDU)

HSP 1 Score: 77.0 bits (188), Expect = 1.710e-14
Identity = 46/96 (47.92%), Postives = 61/96 (63.54%), Query Frame = 1 
Query:    1 ERKERQRALLATR-GDISRSLIVEGRGCRLYREAGDHAAS-DEAALMPWKGRLDTMIDRFDGRALLDVLPDESDTACAGGGGDEPKALEAFLNFER 282
            +R +R+   LA R GD  +S+ V G  CRLYR+ G + AS D+  L+PW G+ D +IDRFDGRALLD +  ES    A    +E + LE F+NFER
Sbjct:   21 KRAQRRAVFLAKRRGDPQQSIQVVGSRCRLYRDDGLYQASEDQQGLIPWNGKQDVLIDRFDGRALLDFIR-ESRHLRAQEKSEEEEELEEFVNFER 115
[Close]
BLAST of mRNA_P-wetherbeei_contig13436.1.1 vs. uniprot
Match: M5W803_PRUPE (DRY_EERY domain-containing protein n=20 Tax=Amygdaloideae TaxID=171637 RepID=M5W803_PRUPE)

HSP 1 Score: 77.0 bits (188), Expect = 2.010e-14
Identity = 46/96 (47.92%), Postives = 61/96 (63.54%), Query Frame = 1 
Query:    1 ERKERQRALLATR-GDISRSLIVEGRGCRLYREAGDHAAS-DEAALMPWKGRLDTMIDRFDGRALLDVLPDESDTACAGGGGDEPKALEAFLNFER 282
            +R +R+   LA R GD  +S+ V G  CRLYR+ G + AS D+  L+PW G+ D +IDRFDGRALLD +  ES    A    +E + LE F+NFER
Sbjct:   21 KRAQRRAVFLAKRRGDPQQSIQVVGSRCRLYRDDGLYQASEDQQGLIPWNGKQDVLIDRFDGRALLDFIR-ESRHLRAQEKSEEEEELEEFVNFER 115
[Close]
BLAST of mRNA_P-wetherbeei_contig13436.1.1 vs. uniprot
Match: A0A200QZH1_9MAGN (Suppressor of white apricot N-terminal domain n=1 Tax=Macleaya cordata TaxID=56857 RepID=A0A200QZH1_9MAGN)

HSP 1 Score: 77.0 bits (188), Expect = 2.010e-14
Identity = 45/97 (46.39%), Postives = 61/97 (62.89%), Query Frame = 1 
Query:    1 ERKERQRALLATR-GDISRSLIVEGRGCRLYREAGDHAAS-DEAALMPWKGRLDTMIDRFDGRALLDVL-PDESDTACAGGGGDEPKALEAFLNFER 282
            +R +R+   LA R GD  +SL+V G  CR YR+ G + A+ D+  L+PW G+ D +IDRFDGRALLD +   +S    A    DE + LE F+NFER
Sbjct:   21 KRAQRRAVFLAKRRGDPQQSLLVVGSRCRTYRDDGLYQATQDQQGLIPWNGKQDILIDRFDGRALLDFIRSSDSRNFRAQSKTDEEEELEEFVNFER 117
[Close]
BLAST of mRNA_P-wetherbeei_contig13436.1.1 vs. uniprot
Match: A0A4Y1RVL3_PRUDU (DRY_EERY domain-containing protein n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A4Y1RVL3_PRUDU)

HSP 1 Score: 77.0 bits (188), Expect = 2.020e-14
Identity = 46/96 (47.92%), Postives = 61/96 (63.54%), Query Frame = 1 
Query:    1 ERKERQRALLATR-GDISRSLIVEGRGCRLYREAGDHAAS-DEAALMPWKGRLDTMIDRFDGRALLDVLPDESDTACAGGGGDEPKALEAFLNFER 282
            +R +R+   LA R GD  +S+ V G  CRLYR+ G + AS D+  L+PW G+ D +IDRFDGRALLD +  ES    A    +E + LE F+NFER
Sbjct:   21 KRAQRRAVFLAKRRGDPQQSIQVVGSRCRLYRDDGLYQASEDQQGLIPWNGKQDVLIDRFDGRALLDFIR-ESRHLRAQEKSEEEEELEEFVNFER 115
[Close]
BLAST of mRNA_P-wetherbeei_contig13436.1.1 vs. uniprot
Match: A0A4S8IM41_MUSBA (DRY_EERY domain-containing protein n=1 Tax=Musa balbisiana TaxID=52838 RepID=A0A4S8IM41_MUSBA)

HSP 1 Score: 76.6 bits (187), Expect = 2.590e-14
Identity = 45/97 (46.39%), Postives = 61/97 (62.89%), Query Frame = 1 
Query:    1 ERKERQRALLATR-GDISRSLIVEGRGCRLYREAGDH-AASDEAALMPWKGRLDTMIDRFDGRALLDVLPDESDTAC-AGGGGDEPKALEAFLNFER 282
            +R +R+   LA R GD  +SL V G  CR+YR+ G + AA D+  L+PW G+ D +IDRFDGRALLD + D S  A       +E + +E F+NFER
Sbjct:   21 KRAQRRAVYLAKRRGDPQQSLQVAGSRCRVYRDDGLYQAAQDQQGLIPWNGKQDILIDRFDGRALLDFIRDSSSRAYRVQERTEEEEEVEEFVNFER 117
[Close]
BLAST of mRNA_P-wetherbeei_contig13436.1.1 vs. uniprot
Match: A0A804JF82_MUSAM ((wild Malaysian banana) hypothetical protein n=1 Tax=Musa acuminata subsp. malaccensis TaxID=214687 RepID=A0A804JF82_MUSAM)

HSP 1 Score: 76.6 bits (187), Expect = 2.740e-14
Identity = 45/97 (46.39%), Postives = 61/97 (62.89%), Query Frame = 1 
Query:    1 ERKERQRALLATR-GDISRSLIVEGRGCRLYREAGDH-AASDEAALMPWKGRLDTMIDRFDGRALLDVLPDESDTAC-AGGGGDEPKALEAFLNFER 282
            +R +R+   LA R GD  +SL V G  CR+YR+ G + AA D+  L+PW G+ D +IDRFDGRALLD + D S  A       +E + +E F+NFER
Sbjct:   21 KRAQRRAVYLAKRRGDPQQSLQVAGSRCRVYRDDGLYQAAQDQQGLIPWNGKQDILIDRFDGRALLDFIRDSSSRAYRVQERTEEEEEVEEFVNFER 117
[Close]
BLAST of mRNA_P-wetherbeei_contig13436.1.1 vs. uniprot
Match: A0A5N5GQF9_9ROSA (CLK4-associating serine/arginine rich protein-like n=8 Tax=Maleae TaxID=721813 RepID=A0A5N5GQF9_9ROSA)

HSP 1 Score: 76.6 bits (187), Expect = 2.750e-14
Identity = 45/96 (46.88%), Postives = 60/96 (62.50%), Query Frame = 1 
Query:    1 ERKERQRALLATR-GDISRSLIVEGRGCRLYREAGDH-AASDEAALMPWKGRLDTMIDRFDGRALLDVLPDESDTACAGGGGDEPKALEAFLNFER 282
            +R +R+   LA R GD  +S+ V G  CRLYR+ G + AA D+  L+PW G+ D +IDRFDGRALLD + D      A    +E + LE F+NFER
Sbjct:   21 KRAQRRAVFLAKRRGDPQQSIQVVGSRCRLYRDDGLYQAAEDQQGLIPWNGKQDVLIDRFDGRALLDFIRDTRHLR-AQEKSEEEEELEEFVNFER 115
[Close]
BLAST of mRNA_P-wetherbeei_contig13436.1.1 vs. uniprot
Match: A0A540M1S1_MALBA (DRY_EERY domain-containing protein n=3 Tax=Malus TaxID=3749 RepID=A0A540M1S1_MALBA)

HSP 1 Score: 76.6 bits (187), Expect = 2.760e-14
Identity = 45/96 (46.88%), Postives = 60/96 (62.50%), Query Frame = 1 
Query:    1 ERKERQRALLATR-GDISRSLIVEGRGCRLYREAGDH-AASDEAALMPWKGRLDTMIDRFDGRALLDVLPDESDTACAGGGGDEPKALEAFLNFER 282
            +R +R+   LA R GD  +S+ V G  CRLYR+ G + AA D+  L+PW G+ D +IDRFDGRALLD + D      A    +E + LE F+NFER
Sbjct:   21 KRAQRRAVFLAKRRGDPQQSIQVVGSRCRLYRDDGLYQAAEDQQGLIPWNGKQDVLIDRFDGRALLDFIRDTRHLR-AQEKSEEEEELEEFVNFER 115
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig13436.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L0Z8_9PHAE2.110e-1549.47DRY_EERY domain-containing protein (Fragment) n=1 ... [more]
D7FX73_ECTSI1.480e-1448.96DRY_EERY domain-containing protein n=1 Tax=Ectocar... [more]
A0A5E4E422_PRUDU1.710e-1447.92PREDICTED: CLK4-associating n=1 Tax=Prunus dulcis ... [more]
M5W803_PRUPE2.010e-1447.92DRY_EERY domain-containing protein n=20 Tax=Amygda... [more]
A0A200QZH1_9MAGN2.010e-1446.39Suppressor of white apricot N-terminal domain n=1 ... [more]
A0A4Y1RVL3_PRUDU2.020e-1447.92DRY_EERY domain-containing protein n=1 Tax=Prunus ... [more]
A0A4S8IM41_MUSBA2.590e-1446.39DRY_EERY domain-containing protein n=1 Tax=Musa ba... [more]
A0A804JF82_MUSAM2.740e-1446.39(wild Malaysian banana) hypothetical protein n=1 T... [more]
A0A5N5GQF9_9ROSA2.750e-1446.88CLK4-associating serine/arginine rich protein-like... [more]
A0A540M1S1_MALBA2.760e-1446.88DRY_EERY domain-containing protein n=3 Tax=Malus T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig13436contigP-wetherbeei_contig13436:97..381 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7FX73
Preferred nameCLASRP
PFAMsDRY_EERY
Model size285
Max annot lvl2759|Eukaryota
KEGG koko:K11863,ko:K13168
KEGG Pathwayko04141,map04141
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0031974,GO:0031981,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0070013
Exons1
Evalue2.42e-15
EggNOG OGsKOG2548@1|root,KOG2548@2759|Eukaryota
DescriptionRNA splicing
Cds size285
COG categoryS
BRITEko00000,ko00001,ko01000,ko01002,ko03041,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185985.281683-CDS-P-wetherbeei_contig13436:96..3811683185985.281683-CDS-P-wetherbeei_contig13436:96..381Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13436 97..381 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig13436.1.1prot_P-wetherbeei_contig13436.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig13436 97..381 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig13436.1.1

>prot_P-wetherbeei_contig13436.1.1 ID=prot_P-wetherbeei_contig13436.1.1|Name=mRNA_P-wetherbeei_contig13436.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=95bp
ERKERQRALLATRGDISRSLIVEGRGCRLYREAGDHAASDEAALMPWKGR
LDTMIDRFDGRALLDVLPDESDTACAGGGGDEPKALEAFLNFER*
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mRNA from alignment at P-wetherbeei_contig13436:97..381-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig13436.1.1 ID=mRNA_P-wetherbeei_contig13436.1.1|Name=mRNA_P-wetherbeei_contig13436.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=285bp|location=Sequence derived from alignment at P-wetherbeei_contig13436:97..381- (Phaeothamnion wetherbeei SAG_119_79)
GAACGTAAAGAGCGGCAGCGCGCCCTCCTGGCCACAAGAGGCGACATCTC
CCGCTCGCTAATCGTCGAAGGCCGCGGCTGCCGGCTCTACCGCGAGGCCG
GCGATCACGCCGCCAGCGACGAGGCGGCCCTGATGCCCTGGAAAGGCCGC
CTGGACACGATGATCGATCGTTTCGACGGCCGCGCCTTGCTGGATGTGCT
GCCGGACGAGAGCGACACCGCATGCGCCGGCGGTGGCGGCGACGAGCCCA
AGGCCCTCGAGGCCTTTCTGAACTTTGAACGGTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig13436:97..381-

>mRNA_P-wetherbeei_contig13436.1.1 ID=mRNA_P-wetherbeei_contig13436.1.1|Name=mRNA_P-wetherbeei_contig13436.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=285bp|location=Sequence derived from alignment at P-wetherbeei_contig13436:97..381- (Phaeothamnion wetherbeei SAG_119_79)
GAACGTAAAGAGCGGCAGCGCGCCCTCCTGGCCACAAGAGGCGACATCTC
CCGCTCGCTAATCGTCGAAGGCCGCGGCTGCCGGCTCTACCGCGAGGCCG
GCGATCACGCCGCCAGCGACGAGGCGGCCCTGATGCCCTGGAAAGGCCGC
CTGGACACGATGATCGATCGTTTCGACGGCCGCGCCTTGCTGGATGTGCT
GCCGGACGAGAGCGACACCGCATGCGCCGGCGGTGGCGGCGACGAGCCCA
AGGCCCTCGAGGCCTTTCTGAACTTTGAACGGTGA
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