mRNA_P-wetherbeei_contig1342.7.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1342.7.1
Unique NamemRNA_P-wetherbeei_contig1342.7.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1342.7.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1342contigP-wetherbeei_contig1342:6583..7102 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog310453.XP_007586104.1
PFAMsAT_hook,BRCT
Model size402
Max annot lvl4751|Fungi
Hectar predicted targeting categoryother localisation
Exons2
Evalue4.26e-08
EggNOG OGs2BHU9@1|root,2S1CP@2759|Eukaryota,39W48@33154|Opisthokonta,3NYCZ@4751|Fungi,3QQCY@4890|Ascomycota,203AA@147541|Dothideomycetes
Cds size348
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185984.7193666-CDS-P-wetherbeei_contig1342:6582..67021683185984.7193666-CDS-P-wetherbeei_contig1342:6582..6702Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1342 6583..6702 -
1683185984.73011-CDS-P-wetherbeei_contig1342:6821..70491683185984.73011-CDS-P-wetherbeei_contig1342:6821..7049Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1342 6822..7049 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185984.7388568-UTR-P-wetherbeei_contig1342:7049..71021683185984.7388568-UTR-P-wetherbeei_contig1342:7049..7102Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1342 7050..7102 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1342.7.1prot_P-wetherbeei_contig1342.7.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1342 6583..7049 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1342.7.1

>prot_P-wetherbeei_contig1342.7.1 ID=prot_P-wetherbeei_contig1342.7.1|Name=mRNA_P-wetherbeei_contig1342.7.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=116bp
MSANRDMPSVAAPISGGNTSMLIFTGVKAFVDCSLEDGSDVSDVWQRKLE
ERGAKVVQRWPGAAAKLTHLVWQNGKVPKRAQQALLYGIPVCGVDWVEDC
IAIGRRLDEFEYQATW
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mRNA from alignment at P-wetherbeei_contig1342:6583..7102-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1342.7.1 ID=mRNA_P-wetherbeei_contig1342.7.1|Name=mRNA_P-wetherbeei_contig1342.7.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=520bp|location=Sequence derived from alignment at P-wetherbeei_contig1342:6583..7102- (Phaeothamnion wetherbeei SAG_119_79)
GTAAACGTGGGTCACGGGCAACGATAGACGTAACTACGCCATAAGCTTGA
CCAATGAGCGCTAACAGGGACATGCCTTCGGTGGCGGCACCGATTTCCGG
CGGCAACACGTCGATGTTAATCTTTACTGGAGTGAAAGCTTTCGTAGATT
GCAGCTTGGAAGACGGCTCGGACGTCTCCGACGTGTGGCAGAGAAAGCTA
GAAGAACGCGGCGCGAAGGTTGTCCAGCGCTGGCCCGGCGCCGCTGCAAA
GCTCACACATTTGGTCTGGCAGAACGGGAAGGTGATGAGAAAGAAGAGAT
GATGAGAAAGAAGAGAAAAGGGTTCCCTGTTGAAAGCCTGCATTGCATGC
AATCATTGCTGATTTTTCCTTTCCATTCCATCCCATCTCTCTTTCCTCAG
GTCCCCAAACGCGCGCAGCAAGCGCTCCTGTATGGCATCCCGGTCTGCGG
CGTCGACTGGGTCGAGGATTGCATCGCGATCGGACGCCGCCTCGACGAGT
TCGAATACCAAGCAACCTGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1342:6583..7102-

>mRNA_P-wetherbeei_contig1342.7.1 ID=mRNA_P-wetherbeei_contig1342.7.1|Name=mRNA_P-wetherbeei_contig1342.7.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=348bp|location=Sequence derived from alignment at P-wetherbeei_contig1342:6583..7102- (Phaeothamnion wetherbeei SAG_119_79)
ATGAGCGCTAACAGGGACATGCCTTCGGTGGCGGCACCGATTTCCGGCGG
CAACACGTCGATGTTAATCTTTACTGGAGTGAAAGCTTTCGTAGATTGCA
GCTTGGAAGACGGCTCGGACGTCTCCGACGTGTGGCAGAGAAAGCTAGAA
GAACGCGGCGCGAAGGTTGTCCAGCGCTGGCCCGGCGCCGCTGCAAAGCT
CACACATTTGGTCTGGCAGAACGGGAAGGTCCCCAAACGCGCGCAGCAAG
CGCTCCTGTATGGCATCCCGGTCTGCGGCGTCGACTGGGTCGAGGATTGC
ATCGCGATCGGACGCCGCCTCGACGAGTTCGAATACCAAGCAACCTGG
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