mRNA_P-wetherbeei_contig13412.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig13412.1.1
Unique NamemRNA_P-wetherbeei_contig13412.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig13412.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig13412contigP-wetherbeei_contig13412:534..1749 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size446
Hectar predicted targeting categoryother localisation
Exons4
Cds size444
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185984.3707016-CDS-P-wetherbeei_contig13412:533..6521683185984.3707016-CDS-P-wetherbeei_contig13412:533..652Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13412 534..652 +
1683185984.3809464-CDS-P-wetherbeei_contig13412:858..9431683185984.3809464-CDS-P-wetherbeei_contig13412:858..943Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13412 859..943 +
1683185984.3899524-CDS-P-wetherbeei_contig13412:1265..13731683185984.3899524-CDS-P-wetherbeei_contig13412:1265..1373Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13412 1266..1373 +
1683185984.3988547-CDS-P-wetherbeei_contig13412:1617..17491683185984.3988547-CDS-P-wetherbeei_contig13412:1617..1749Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13412 1618..1749 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig13412.1.1prot_P-wetherbeei_contig13412.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig13412 534..1749 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig13412.1.1

>prot_P-wetherbeei_contig13412.1.1 ID=prot_P-wetherbeei_contig13412.1.1|Name=mRNA_P-wetherbeei_contig13412.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=148bp
VAAALAEAVLAADVVERAPGFHARADAWAAAQLAQEREKRARQMKRYKSG
QDLRPGRLLAPERLRLANAVGCRSARVMEALLQQRGQRAVIAALLAEEVA
NLIQDTAHETWQASLCARAAAEDEAELIFPAPWEVEDKAELIFSAPWE
back to top

mRNA from alignment at P-wetherbeei_contig13412:534..1749+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig13412.1.1 ID=mRNA_P-wetherbeei_contig13412.1.1|Name=mRNA_P-wetherbeei_contig13412.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1216bp|location=Sequence derived from alignment at P-wetherbeei_contig13412:534..1749+ (Phaeothamnion wetherbeei SAG_119_79)
GTGGCGGCGGCACTGGCGGAGGCGGTGTTGGCGGCAGACGTGGTGGAGCG
GGCGCCGGGTTTCCATGCGAGGGCCGACGCGTGGGCGGCGGCGCAGCTGG
CGCAGGAGCGCGAGAAGCGGTGGGCTCGGTTGAGACTGAAACATGCCATG
AGCTGAATGTTTCCCTTTTGCCTGTCTTGGAGCAGGGGCTCCATTATCTA
CATGTTTTCTTGGGCATGCTTTTAGAGATTCTATGGCGTTGGCCAGAAGG
ATAAGCTTCTAGAAGCGCTTCTCCAAACCTTAAGACTGCTTTTCTTTTGC
CGTCTAAATCGTTTCGCTCTTGCAGCGCCCGCCAAATGAAGCGCTACAAG
TCGGGTCAAGACCTCCGGCCTGGTCGGCTACTGGCACCGGAGCGCCTCCG
ACTGGCCAACAAGTGGCGCCGTGACTTTGCGGAGCAGTGCGTCCAGGCGT
GCATCGGCGCCGGCGAAGTCAGGTAAACCAGAATGAAACGGCGGCGGAGC
GACGGCGGCAACAATGGCAGCTACGGCGGTGGCGGCGGCTGCGTTTTAAA
GCCACAGGAGCTGGTGCGGGTGTTGGCAGTCGCGAGGAACAGCGCAGGAA
TCAAAGGTGGTAACTGGACCGGCTTGTGATGGGGAGATTTCTACTTTTCT
GTCGTCGCGGCCAGCTTTCTAGTCCCTGACTGCTTTCCTCATTCTCTTAT
GTGCCGGGTTCTTCATCTTCGGGCGGTGGTGGGCCGTGGGATGCAGGTCA
GCACGCGTGATGGAGGCGCTGCTGCAGCAGCGTGGCCAGCGCGCCGTCAT
CGCTGCTCTCCTCGCCGAGGAAGTTGCGAACCTGATACAGGTGAGCCCGG
GCAGGCTTTCTTTCACGTAACAGCTTCTCTCCGGATAGATGCAGCAGGCC
GAGAACACAGTAATTTTACTCTGCAGAACACATCAACTTCTGAATGGATG
CCTTAATAGTATCTCACTATTGTCATCTGTTGTCCAGCTGCCGCCAGGAC
CTGGAGGACGATTTCACCGCAGCTTTGCACCCAATGGTTCCTTCTTTTCG
CCGATAAACTCTTGCTTCTTCCATGAATAAACAGGACACCGCGCATGAGA
CATGGCAGGCGAGCCTTTGCGCCCGCGCCGCCGCGGAGGACGAGGCCGAG
CTTATCTTTCCGGCGCCTTGGGAAGTGGAGGACAAGGCCGAGCTTATCTT
TTCGGCGCCTTGGGAA
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig13412:534..1749+

>mRNA_P-wetherbeei_contig13412.1.1 ID=mRNA_P-wetherbeei_contig13412.1.1|Name=mRNA_P-wetherbeei_contig13412.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=444bp|location=Sequence derived from alignment at P-wetherbeei_contig13412:534..1749+ (Phaeothamnion wetherbeei SAG_119_79)
GTGGCGGCGGCACTGGCGGAGGCGGTGTTGGCGGCAGACGTGGTGGAGCG
GGCGCCGGGTTTCCATGCGAGGGCCGACGCGTGGGCGGCGGCGCAGCTGG
CGCAGGAGCGCGAGAAGCGCGCCCGCCAAATGAAGCGCTACAAGTCGGGT
CAAGACCTCCGGCCTGGTCGGCTACTGGCACCGGAGCGCCTCCGACTGGC
CAACGCCGTGGGATGCAGGTCAGCACGCGTGATGGAGGCGCTGCTGCAGC
AGCGTGGCCAGCGCGCCGTCATCGCTGCTCTCCTCGCCGAGGAAGTTGCG
AACCTGATACAGGACACCGCGCATGAGACATGGCAGGCGAGCCTTTGCGC
CCGCGCCGCCGCGGAGGACGAGGCCGAGCTTATCTTTCCGGCGCCTTGGG
AAGTGGAGGACAAGGCCGAGCTTATCTTTTCGGCGCCTTGGGAA
back to top