mRNA_P-wetherbeei_contig13409.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig13409.2.1
Unique NamemRNA_P-wetherbeei_contig13409.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig13409.2.1 vs. uniprot
Match: D7G630_ECTSI (20S proteasome alpha subunit C n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G630_ECTSI)

HSP 1 Score: 96.3 bits (238), Expect = 1.790e-22
Identity = 44/62 (70.97%), Postives = 52/62 (83.87%), Query Frame = 1 
Query:    1 ADVKQSFTQRGGLRPWGASLLLAGWDQWHGPQLYMTEPSGNFAAFRAMAIGAGAGRLRRDLA 186
            ADVKQ++TQ GGLRPWG S+LLAGWD+  G QLY TEPSGNF AF+A+A+GAGA RL  +LA
Sbjct:  123 ADVKQAYTQHGGLRPWGVSMLLAGWDESRGLQLYKTEPSGNFGAFKAVAVGAGASRLSAELA 184
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BLAST of mRNA_P-wetherbeei_contig13409.2.1 vs. uniprot
Match: A0A7S0YDQ4_9CHLO (Proteasome subunit alpha type n=1 Tax=Polytomella parva TaxID=51329 RepID=A0A7S0YDQ4_9CHLO)

HSP 1 Score: 75.9 bits (185), Expect = 4.130e-15
Identity = 33/53 (62.26%), Postives = 44/53 (83.02%), Query Frame = 1 
Query:    1 ADVKQSFTQRGGLRPWGASLLLAGWDQWHGPQLYMTEPSGNFAAFRAMAIGAG 159
            +DVKQ +TQ GG RP+G S+L+AGWD+ +G QLYMT PSGN+  ++AMAIG+G
Sbjct:  118 SDVKQGYTQFGGQRPFGVSMLIAGWDEHYGWQLYMTNPSGNYGGWQAMAIGSG 170
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BLAST of mRNA_P-wetherbeei_contig13409.2.1 vs. uniprot
Match: A0A0S4JLA2_BODSA (Proteasome subunit alpha type n=1 Tax=Bodo saltans TaxID=75058 RepID=A0A0S4JLA2_BODSA)

HSP 1 Score: 75.1 bits (183), Expect = 1.050e-14
Identity = 33/50 (66.00%), Postives = 42/50 (84.00%), Query Frame = 1 
Query:    4 DVKQSFTQRGGLRPWGASLLLAGWDQWHGPQLYMTEPSGNFAAFRAMAIG 153
            DVKQS TQ G +RP+G S LLAGWD++HG QLY T+PSGNF+A++A A+G
Sbjct:  122 DVKQSITQYGSVRPFGVSFLLAGWDRFHGFQLYHTDPSGNFSAWKAYAVG 171
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BLAST of mRNA_P-wetherbeei_contig13409.2.1 vs. uniprot
Match: A0A2A9M770_9APIC (Proteasome subunit alpha type n=2 Tax=Sarcocystidae TaxID=5809 RepID=A0A2A9M770_9APIC)

HSP 1 Score: 74.3 bits (181), Expect = 1.460e-14
Identity = 33/50 (66.00%), Postives = 41/50 (82.00%), Query Frame = 1 
Query:    4 DVKQSFTQRGGLRPWGASLLLAGWDQWHGPQLYMTEPSGNFAAFRAMAIG 153
            DVKQS+TQ GGLRP+G S L AGWD+ HG QLY T+PSGN++ ++A AIG
Sbjct:  116 DVKQSYTQFGGLRPFGVSFLFAGWDRHHGFQLYHTDPSGNYSGWKATAIG 165
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BLAST of mRNA_P-wetherbeei_contig13409.2.1 vs. uniprot
Match: A0A835YYM9_9STRA (Proteasome subunit alpha type n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYM9_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 2.540e-14
Identity = 33/60 (55.00%), Postives = 42/60 (70.00%), Query Frame = 1 
Query:    4 DVKQSFTQRGGLRPWGASLLLAGWDQWHGPQLYMTEPSGNFAAFRAMAIGAGAGRLRRDL 183
            D+KQ FTQRGGLRPWG S L+AG+D  +G QLY T+P GNF AF A  +G+ +  +   L
Sbjct:  123 DIKQVFTQRGGLRPWGVSFLVAGYDHDNGLQLYKTDPGGNFGAFEAAVVGSNSTLIAESL 182
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BLAST of mRNA_P-wetherbeei_contig13409.2.1 vs. uniprot
Match: A0A1D3D229_9EIME (Proteasome subunit beta n=1 Tax=Cyclospora cayetanensis TaxID=88456 RepID=A0A1D3D229_9EIME)

HSP 1 Score: 73.6 bits (179), Expect = 2.640e-14
Identity = 32/50 (64.00%), Postives = 40/50 (80.00%), Query Frame = 1 
Query:    4 DVKQSFTQRGGLRPWGASLLLAGWDQWHGPQLYMTEPSGNFAAFRAMAIG 153
            D+KQS+TQ GGLRP+G S L AGWD  HG QLY T+PSGN++ ++A AIG
Sbjct:  112 DIKQSYTQFGGLRPFGVSFLFAGWDMHHGFQLYHTDPSGNYSGWKATAIG 161
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BLAST of mRNA_P-wetherbeei_contig13409.2.1 vs. uniprot
Match: C4M7Z3_ENTHI (Proteasome subunit alpha type n=7 Tax=Entamoeba TaxID=5758 RepID=C4M7Z3_ENTHI)

HSP 1 Score: 73.2 bits (178), Expect = 3.840e-14
Identity = 32/51 (62.75%), Postives = 41/51 (80.39%), Query Frame = 1 
Query:    4 DVKQSFTQRGGLRPWGASLLLAGWDQWHGPQLYMTEPSGNFAAFRAMAIGA 156
            D+KQS+TQ GGLRP+G S L AGWD++ G QLYM +PSGN+  ++A AIGA
Sbjct:  116 DMKQSYTQYGGLRPYGVSFLYAGWDRYFGYQLYMCDPSGNYGGWKATAIGA 166
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BLAST of mRNA_P-wetherbeei_contig13409.2.1 vs. uniprot
Match: A0A0A1U345_ENTIV (Proteasome subunit alpha type n=1 Tax=Entamoeba invadens IP1 TaxID=370355 RepID=A0A0A1U345_ENTIV)

HSP 1 Score: 73.2 bits (178), Expect = 3.890e-14
Identity = 32/51 (62.75%), Postives = 41/51 (80.39%), Query Frame = 1 
Query:    4 DVKQSFTQRGGLRPWGASLLLAGWDQWHGPQLYMTEPSGNFAAFRAMAIGA 156
            D+KQS+TQ GGLRP+G S L AGWD++ G QLYM +PSGN+  ++A AIGA
Sbjct:  116 DMKQSYTQYGGLRPYGVSFLYAGWDKYFGYQLYMCDPSGNYGGWKATAIGA 166
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BLAST of mRNA_P-wetherbeei_contig13409.2.1 vs. uniprot
Match: U3LNK3_9TRYP (Proteasome subunit alpha type (Fragment) n=1 Tax=Paratrypanosoma confusum TaxID=1470209 RepID=U3LNK3_9TRYP)

HSP 1 Score: 73.2 bits (178), Expect = 5.720e-14
Identity = 32/50 (64.00%), Postives = 42/50 (84.00%), Query Frame = 1 
Query:    4 DVKQSFTQRGGLRPWGASLLLAGWDQWHGPQLYMTEPSGNFAAFRAMAIG 153
            D KQ +TQ GG+RP+GAS L+AGWD++HG QLY T+PSGN+ A++A AIG
Sbjct:  122 DQKQLYTQYGGVRPFGASFLIAGWDRYHGFQLYHTDPSGNYTAWKADAIG 171
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BLAST of mRNA_P-wetherbeei_contig13409.2.1 vs. uniprot
Match: A0A061QSZ7_9CHLO (Proteasome subunit alpha type n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061QSZ7_9CHLO)

HSP 1 Score: 72.8 bits (177), Expect = 5.860e-14
Identity = 32/51 (62.75%), Postives = 40/51 (78.43%), Query Frame = 1 
Query:    4 DVKQSFTQRGGLRPWGASLLLAGWDQWHGPQLYMTEPSGNFAAFRAMAIGA 156
            D KQ +TQ GGLRP+G SLL AGWD+ HG QLY ++PSGNF  ++A A+GA
Sbjct:  119 DTKQGYTQFGGLRPFGVSLLYAGWDEHHGFQLYHSDPSGNFGGWKATAVGA 169
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig13409.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G630_ECTSI1.790e-2270.9720S proteasome alpha subunit C n=1 Tax=Ectocarpus ... [more]
A0A7S0YDQ4_9CHLO4.130e-1562.26Proteasome subunit alpha type n=1 Tax=Polytomella ... [more]
A0A0S4JLA2_BODSA1.050e-1466.00Proteasome subunit alpha type n=1 Tax=Bodo saltans... [more]
A0A2A9M770_9APIC1.460e-1466.00Proteasome subunit alpha type n=2 Tax=Sarcocystida... [more]
A0A835YYM9_9STRA2.540e-1455.00Proteasome subunit alpha type n=1 Tax=Tribonema mi... [more]
A0A1D3D229_9EIME2.640e-1464.00Proteasome subunit beta n=1 Tax=Cyclospora cayetan... [more]
C4M7Z3_ENTHI3.840e-1462.75Proteasome subunit alpha type n=7 Tax=Entamoeba Ta... [more]
A0A0A1U345_ENTIV3.890e-1462.75Proteasome subunit alpha type n=1 Tax=Entamoeba in... [more]
U3LNK3_9TRYP5.720e-1464.00Proteasome subunit alpha type (Fragment) n=1 Tax=P... [more]
A0A061QSZ7_9CHLO5.860e-1462.75Proteasome subunit alpha type n=1 Tax=Tetraselmis ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig13409contigP-wetherbeei_contig13409:1660..1845 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7G630
Preferred namePSMA4
PFAMsProteasome,Proteasome_A_N
Model size186
Max annot lvl2759|Eukaryota
KEGG rclassRC00005
KEGG koko:K02728,ko:K10747
KEGG ReactionR00381,R00382,R10822,R10823
KEGG Pathwayko03030,ko03050,ko03410,ko03420,ko03430,map03030,map03050,map03410,map03420,map03430
KEGG ModuleM00337,M00340
Hectar predicted targeting categoryother localisation
GOsGO:0000502,GO:0000932,GO:0001673,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005773,GO:0005829,GO:0005839,GO:0005840,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0007088,GO:0007346,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009896,GO:0009987,GO:0010035,GO:0010038,GO:0010498,GO:0010499,GO:0010564,GO:0010638,GO:0010965,GO:0012505,GO:0016020,GO:0016043,GO:0016579,GO:0019538,GO:0019773,GO:0019941,GO:0022607,GO:0022626,GO:0030071,GO:0030163,GO:0031331,GO:0031597,GO:0031974,GO:0031981,GO:0032270,GO:0032436,GO:0032991,GO:0033043,GO:0033044,GO:0033045,GO:0033047,GO:0034515,GO:0034622,GO:0035770,GO:0036211,GO:0036464,GO:0042175,GO:0042221,GO:0043073,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043248,GO:0043412,GO:0043632,GO:0043687,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0045732,GO:0045787,GO:0045840,GO:0045842,GO:0045862,GO:0045931,GO:0046686,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051130,GO:0051247,GO:0051603,GO:0051726,GO:0051781,GO:0051783,GO:0051785,GO:0051983,GO:0051984,GO:0062033,GO:0065003,GO:0065007,GO:0070013,GO:0070646,GO:0070647,GO:0071704,GO:0071840,GO:0080129,GO:0090068,GO:1901564,GO:1901565,GO:1901575,GO:1901800,GO:1901970,GO:1901987,GO:1901989,GO:1901990,GO:1901992,GO:1902099,GO:1902101,GO:1902494,GO:1903052,GO:1903364,GO:1905368,GO:1905369,GO:1905818,GO:1905820,GO:1990904,GO:2001252
Exons1
Evalue2.94e-23
EggNOG OGsCOG0638@1|root,KOG0178@2759|Eukaryota
Ec32 ortholog descriptionProteasome alpha-subunit, N-terminal domain
Ec32 orthologEc-11_004900.1
EC3.4.25.1,6.5.1.1,6.5.1.6,6.5.1.7
Descriptionthreonine-type endopeptidase activity
Cds size186
COG categoryO
BRITEko00000,ko00001,ko00002,ko01000,ko01002,ko03032,ko03051,ko03400
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185984.179526-CDS-P-wetherbeei_contig13409:1659..18451683185984.179526-CDS-P-wetherbeei_contig13409:1659..1845Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13409 1660..1845 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig13409.2.1prot_P-wetherbeei_contig13409.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig13409 1660..1845 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig13409.2.1

>prot_P-wetherbeei_contig13409.2.1 ID=prot_P-wetherbeei_contig13409.2.1|Name=mRNA_P-wetherbeei_contig13409.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=62bp
ADVKQSFTQRGGLRPWGASLLLAGWDQWHGPQLYMTEPSGNFAAFRAMAI
GAGAGRLRRDLA
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mRNA from alignment at P-wetherbeei_contig13409:1660..1845-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig13409.2.1 ID=mRNA_P-wetherbeei_contig13409.2.1|Name=mRNA_P-wetherbeei_contig13409.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=186bp|location=Sequence derived from alignment at P-wetherbeei_contig13409:1660..1845- (Phaeothamnion wetherbeei SAG_119_79)
GCCGACGTCAAGCAGAGCTTCACGCAGCGCGGCGGGCTGCGGCCGTGGGG
CGCCTCTTTACTGCTGGCGGGTTGGGATCAGTGGCACGGTCCACAACTCT
ACATGACGGAGCCCAGCGGCAATTTCGCCGCCTTTCGCGCCATGGCGATC
GGCGCCGGCGCTGGACGCCTCCGGCGCGACCTTGCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig13409:1660..1845-

>mRNA_P-wetherbeei_contig13409.2.1 ID=mRNA_P-wetherbeei_contig13409.2.1|Name=mRNA_P-wetherbeei_contig13409.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=186bp|location=Sequence derived from alignment at P-wetherbeei_contig13409:1660..1845- (Phaeothamnion wetherbeei SAG_119_79)
GCCGACGTCAAGCAGAGCTTCACGCAGCGCGGCGGGCTGCGGCCGTGGGG
CGCCTCTTTACTGCTGGCGGGTTGGGATCAGTGGCACGGTCCACAACTCT
ACATGACGGAGCCCAGCGGCAATTTCGCCGCCTTTCGCGCCATGGCGATC
GGCGCCGGCGCTGGACGCCTCCGGCGCGACCTTGCC
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