mRNA_P-wetherbeei_contig13406.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig13406.1.1
Unique NamemRNA_P-wetherbeei_contig13406.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig13406.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig13406contigP-wetherbeei_contig13406:2..1758 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D8LBX9
PFAMsDHR-2,DOCK-C2,DUF3398
Model size913
Max annot lvl2759|Eukaryota
KEGG koko:K21853
Hectar predicted targeting categoryother localisation
Exons4
Evalue0.00012
EggNOG OGsKOG1997@1|root,KOG1997@2759|Eukaryota
Descriptionmemory T cell proliferation
Cds size891
COG categoryZ
BRITEko00000,ko04131
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185984.057666-UTR-P-wetherbeei_contig13406:1..221683185984.057666-UTR-P-wetherbeei_contig13406:1..22Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig13406 2..22 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185984.0732527-CDS-P-wetherbeei_contig13406:22..3281683185984.0732527-CDS-P-wetherbeei_contig13406:22..328Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13406 23..328 +
1683185984.0808644-CDS-P-wetherbeei_contig13406:494..7761683185984.0808644-CDS-P-wetherbeei_contig13406:494..776Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13406 495..776 +
1683185984.0915425-CDS-P-wetherbeei_contig13406:1094..11781683185984.0915425-CDS-P-wetherbeei_contig13406:1094..1178Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13406 1095..1178 +
1683185984.1095364-CDS-P-wetherbeei_contig13406:1539..17581683185984.1095364-CDS-P-wetherbeei_contig13406:1539..1758Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13406 1540..1758 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig13406.1.1prot_P-wetherbeei_contig13406.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig13406 23..1758 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig13406.1.1

>prot_P-wetherbeei_contig13406.1.1 ID=prot_P-wetherbeei_contig13406.1.1|Name=mRNA_P-wetherbeei_contig13406.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=297bp
MRDLGAVGPSLSPGSAAQHGGGGGGGGGGGAVGAAPSQALLRAWVEYCFD
EECPANGVLTGPAAATAAEAARRERLEAAVGRVAAEAVQHTMSVVADGLI
DQFFEETVRERVMEEEWKARQSVVLSKGAVSAVAAAAAAATAATNGGSPG
RRGVDAAGAAGANGSPAEAQRVERPDEWANVMVSRGLKWVQSWTRQDPYY
DMDDVGSVRERKSSINGIADLCDQLIEDDGVYGDDDDGTDDTMLSLPSPP
RRGITGSTASTTSTSSPGGTAAARPGSAAATAGAYGARVASGGANDR
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mRNA from alignment at P-wetherbeei_contig13406:2..1758+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig13406.1.1 ID=mRNA_P-wetherbeei_contig13406.1.1|Name=mRNA_P-wetherbeei_contig13406.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1757bp|location=Sequence derived from alignment at P-wetherbeei_contig13406:2..1758+ (Phaeothamnion wetherbeei SAG_119_79)
CTCACCAATGGCGGCAGCAGCATGCGGGACCTCGGCGCCGTCGGCCCGTC
GCTGAGCCCGGGCAGTGCCGCGCAGCATGGCGGCGGCGGTGGCGGCGGCG
GCGGTGGCGGAGCGGTGGGAGCAGCGCCGTCGCAGGCGCTTCTCCGCGCC
TGGGTGGAGTACTGTTTCGACGAGGAGTGCCCGGCGAACGGGGTGTTGAC
GGGGCCCGCGGCGGCGACGGCGGCGGAGGCGGCGCGGCGCGAGCGGCTGG
AGGCGGCGGTGGGGCGGGTGGCGGCGGAAGCGGTGCAGCATACCATGAGC
GTCGTCGCCGACGGCCTTATTGACCAGGTTTGTCCCCTGAACCAACTGTG
GTTTGTTTTCTTATTTCGTCGTTGCCGGCCGACTCGTTCACCAGTCGTAC
GGGTGTTTCGCTTATGATAGAAGGTGCAATGTTTCCGTCTTTCCTCACTT
CAGCTGACCTCTCCCTTATACTTTTTATCAACTCTCCCACCAGTTCTTCG
AGGAGACGGTGAGGGAGCGCGTTATGGAGGAGGAGTGGAAGGCGCGTCAG
TCGGTCGTCCTCTCCAAGGGCGCAGTCAGCGCCGTCGCTGCCGCTGCCGC
TGCCGCCACCGCCGCAACAAACGGCGGCAGTCCCGGCAGGCGCGGCGTGG
ACGCCGCCGGAGCCGCCGGTGCCAACGGGAGCCCGGCGGAGGCGCAGCGC
GTGGAGCGGCCAGACGAGTGGGCAAATGTCATGGTCAGCCGCGGCCTGAA
GTGGGTGCAGAGCTGGACGCGTCAGGTGTGTGACTTTCACTTTGTGACGT
TCGTGTTTCATGCTATGCGTCGCGTATTTCATCCAAACTTTCTGCTTCGT
TTTTTCTTTGATGAGCTTCTTCCTTATGTTCATTGGACGGTCTTTTGCTG
CGGCACGCTCTCACAATTACGTTGCGTGACTGGTAGCGCTCCAAAGAGCG
TGATGCTGCGGTTTTCCTACGCTTGACATCCAATTCAACTGCTCTGTTTT
CCGCGCTTCGCTGCCTCTATTCTCTGCTGCATCATCGTCGGTTAATGAGA
CGGGCCCGGACGGTCGGACGGCGGGATGGTCGAGCTGCGGCAGGACCCGT
ACTACGACATGGACGACGTGGGGTCGGTGCGGGAACGCAAGTCGAGCATC
AACGGCATTGCCGACCTCTGCGACCAGGTGAGCAAGGGGGCTTCAGATAA
TTGAAGGGAGGAGAAGGCCAGCTGCCGGCCCAATCAGCGGCCGATGTTGG
TGTCTGTGCCCGCCATGGCCAGCCATACCTGCCGTGCCTGCCACCCATGC
TGGTCCGATTTGAGACGAAGCGGCTGCAATTTGGCCCTGCTGGCTTCGGT
CTCCCTCACATTTTTCAGAAAAGCCACTTTCTGTCTGTGACACAAATGCT
TTGTTTCCTTACATACCATGAACGAATCTCGCTTAACAGCTGAAAGAAGG
GGTGACGACATTCCCTGGCAACTTTCTTGCACATTTCCTTTGTCACCGTT
GCCCTGTCGCGCCGGCCGGCTTGGTCGCGCATGTCCAGCTCATCGAGGAC
GATGGCGTATACGGTGACGACGACGACGGTACAGACGACACGATGCTGTC
GCTCCCCAGCCCCCCACGCCGCGGCATCACGGGGAGCACCGCCAGCACCA
CGAGCACCAGCAGCCCCGGAGGCACTGCGGCAGCCAGGCCCGGCTCCGCC
GCCGCCACCGCAGGTGCCTACGGCGCCCGCGTCGCCAGCGGCGGCGCCAA
CGACCGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig13406:2..1758+

>mRNA_P-wetherbeei_contig13406.1.1 ID=mRNA_P-wetherbeei_contig13406.1.1|Name=mRNA_P-wetherbeei_contig13406.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=891bp|location=Sequence derived from alignment at P-wetherbeei_contig13406:2..1758+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCGGGACCTCGGCGCCGTCGGCCCGTCGCTGAGCCCGGGCAGTGCCGC
GCAGCATGGCGGCGGCGGTGGCGGCGGCGGCGGTGGCGGAGCGGTGGGAG
CAGCGCCGTCGCAGGCGCTTCTCCGCGCCTGGGTGGAGTACTGTTTCGAC
GAGGAGTGCCCGGCGAACGGGGTGTTGACGGGGCCCGCGGCGGCGACGGC
GGCGGAGGCGGCGCGGCGCGAGCGGCTGGAGGCGGCGGTGGGGCGGGTGG
CGGCGGAAGCGGTGCAGCATACCATGAGCGTCGTCGCCGACGGCCTTATT
GACCAGTTCTTCGAGGAGACGGTGAGGGAGCGCGTTATGGAGGAGGAGTG
GAAGGCGCGTCAGTCGGTCGTCCTCTCCAAGGGCGCAGTCAGCGCCGTCG
CTGCCGCTGCCGCTGCCGCCACCGCCGCAACAAACGGCGGCAGTCCCGGC
AGGCGCGGCGTGGACGCCGCCGGAGCCGCCGGTGCCAACGGGAGCCCGGC
GGAGGCGCAGCGCGTGGAGCGGCCAGACGAGTGGGCAAATGTCATGGTCA
GCCGCGGCCTGAAGTGGGTGCAGAGCTGGACGCGTCAGGACCCGTACTAC
GACATGGACGACGTGGGGTCGGTGCGGGAACGCAAGTCGAGCATCAACGG
CATTGCCGACCTCTGCGACCAGCTCATCGAGGACGATGGCGTATACGGTG
ACGACGACGACGGTACAGACGACACGATGCTGTCGCTCCCCAGCCCCCCA
CGCCGCGGCATCACGGGGAGCACCGCCAGCACCACGAGCACCAGCAGCCC
CGGAGGCACTGCGGCAGCCAGGCCCGGCTCCGCCGCCGCCACCGCAGGTG
CCTACGGCGCCCGCGTCGCCAGCGGCGGCGCCAACGACCGG
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