mRNA_P-wetherbeei_contig13384.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig13384.1.1
Unique NamemRNA_P-wetherbeei_contig13384.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig13384.1.1 vs. uniprot
Match: A0A6H5JK18_9PHAE (F-box domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK18_9PHAE)

HSP 1 Score: 172 bits (437), Expect = 8.760e-47
Identity = 85/168 (50.60%), Postives = 114/168 (67.86%), Query Frame = 1
Query:    1 RVVARDLPSLETGGAVLSVAISRDDRLLLVNVRRFLDDGY-KTFRGMSPLEASLHPSPDVESAVELQVWDVATRKKLFTLGGAHAFTTRDCLFLLFSAQSRADAGESTGGGSSDSHSVYIWHLRQQRLLAVLKGHNDVVSATSWNPAVPGMLASCSDDLTVRIWAPAV 501
            +V AR + ++E GGAVLS++++RDDR ++VNVR F+     K +R         H +P++ + +ELQVWDVAT+K  F LGG HAFTT+DC FL+ +AQS AD         S+ H V++WHLR + LL VLKGH DVV++ SWNP  PGM++SCSDD T  IW P V
Sbjct:  885 KVTARRMEAVECGGAVLSLSLTRDDRFIMVNVRPFMKGALDKLYR-----PEGRHTAPEISNEIELQVWDVATKKLAFKLGGHHAFTTKDCPFLIMAAQSAADPFGDYVCSGSEEHRVFVWHLRHRLLLGVLKGHEDVVNSVSWNPKYPGMMSSCSDDGTAIIWGPRV 1047          
BLAST of mRNA_P-wetherbeei_contig13384.1.1 vs. uniprot
Match: D7G5J6_ECTSI (F-box domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5J6_ECTSI)

HSP 1 Score: 172 bits (435), Expect = 1.570e-46
Identity = 83/167 (49.70%), Postives = 111/167 (66.47%), Query Frame = 1
Query:    1 RVVARDLPSLETGGAVLSVAISRDDRLLLVNVRRFLDDGYKTFRGMSPLEASLHPSPDVESAVELQVWDVATRKKLFTLGGAHAFTTRDCLFLLFSAQSRADAGESTGGGSSDSHSVYIWHLRQQRLLAVLKGHNDVVSATSWNPAVPGMLASCSDDLTVRIWAPAV 501
            +V AR + ++E GGAVLS++++RDDR ++VNVR F+                 H +P++ + +ELQVWDVAT+K  F LGG HAFTT+DC FL+ +AQS AD         S+ H V++WHLR + LL VLKGH DVV++ SWNP  PGM++SCSDD T  IW P V
Sbjct:  829 KVTARRMEAVECGGAVLSLSVTRDDRFIMVNVRPFMKGALDKLHRPE----GRHTAPEISNEIELQVWDVATKKLAFKLGGHHAFTTKDCPFLIMAAQSAADPFGDYVCSGSEEHRVFVWHLRHRLLLGVLKGHEDVVNSVSWNPKYPGMMSSCSDDGTAIIWGPRV 991          
BLAST of mRNA_P-wetherbeei_contig13384.1.1 vs. uniprot
Match: A0A183J8L9_9BILA (WD_REPEATS_REGION domain-containing protein n=1 Tax=Soboliphyme baturini TaxID=241478 RepID=A0A183J8L9_9BILA)

HSP 1 Score: 78.2 bits (191), Expect = 1.190e-15
Identity = 35/62 (56.45%), Postives = 42/62 (67.74%), Query Frame = 1
Query:  310 GESTGGGSSDSHSVYIWHLRQQRLLAVLKGHNDVVSATSWNPAVPGMLASCSDDLTVRIWAP 495
            GE      S+  +VYIWH  ++  L VLKGHN VV+A SWNP  P ML SCSDD TVR+W+P
Sbjct:   35 GERFVASGSEDGNVYIWHRDREEPLLVLKGHNGVVNAVSWNPVDPSMLVSCSDDGTVRLWSP 96          
BLAST of mRNA_P-wetherbeei_contig13384.1.1 vs. uniprot
Match: S4RAG9_PETMA (Uncharacterized protein n=1 Tax=Petromyzon marinus TaxID=7757 RepID=S4RAG9_PETMA)

HSP 1 Score: 78.6 bits (192), Expect = 1.510e-15
Identity = 34/55 (61.82%), Postives = 40/55 (72.73%), Query Frame = 1
Query:  334 SDSHSVYIWHLRQQRLLAVLKGHNDVVSATSWNPAVPGMLASCSDDLTVRIWAPA 498
            S+ H VY+WH +Q++ +AVL GH   VS  SWNP VP MLAS SDD TVRIW PA
Sbjct:   68 SEDHKVYVWHRKQEQPVAVLAGHTRAVSCVSWNPRVPSMLASASDDGTVRIWGPA 122          
BLAST of mRNA_P-wetherbeei_contig13384.1.1 vs. uniprot
Match: A0A0L0RX32_ALLM3 (LisH domain-containing protein n=2 Tax=Allomyces macrogynus (strain ATCC 38327) TaxID=578462 RepID=A0A0L0RX32_ALLM3)

HSP 1 Score: 81.6 bits (200), Expect = 5.700e-15
Identity = 59/185 (31.89%), Postives = 83/185 (44.86%), Query Frame = 1
Query:   16 DLPSLETGGAVLSVAISRDDRLLLVNV-------------------------RRFLDDGYKTFRGMSPLEASLHPSPDVESAVELQVWDVATRKKLFTLGGAHAFTTRDCLFLLFSAQSRADAGESTGGGSSDSHSVYIWHLRQQRLLAVLKGHNDVVSATSWNPAVPGMLASCSDDLTVRIWAP 495
            ++ SL     + SV +S+D R LL+N+                         R        +    SPL ++ HPSP   SA     +    R  L      H    +   F++ SA      GE+     S+   VY+WH   + L+ VL+GH+D V+A +WNP VPGMLAS SDD TVR+W P
Sbjct:  411 EISSLTEAHGITSVCLSKDGRYLLLNLSAQEIHLWDLFPTPTADNVDSPVASRMSPSSSSSSLPLRSPLISNGHPSPTPASAATTSGFPA--RPDLAATYTGH----KQGRFVIRSAL--GGYGEAFIASGSEDARVYVWHRASRALVNVLEGHSDTVNAVAWNPRVPGMLASASDDRTVRLWVP 587          
BLAST of mRNA_P-wetherbeei_contig13384.1.1 vs. uniprot
Match: A7T5Z7_NEMVE (Predicted protein (Fragment) n=2 Tax=Nematostella vectensis TaxID=45351 RepID=A7T5Z7_NEMVE)

HSP 1 Score: 75.1 bits (183), Expect = 8.500e-15
Identity = 31/54 (57.41%), Postives = 39/54 (72.22%), Query Frame = 1
Query:  334 SDSHSVYIWHLRQQRLLAVLKGHNDVVSATSWNPAVPGMLASCSDDLTVRIWAP 495
            S+ H VYIWH++ +R +AVL GH   V+  +WNP VP M+AS SDD TVRIW P
Sbjct:   20 SEDHQVYIWHVKNERPIAVLCGHTRTVNCVTWNPLVPSMMASASDDGTVRIWGP 73          
BLAST of mRNA_P-wetherbeei_contig13384.1.1 vs. uniprot
Match: UPI0014022FE9 (WD repeat-containing protein 26-like isoform X1 n=3 Tax=Petromyzon marinus TaxID=7757 RepID=UPI0014022FE9)

HSP 1 Score: 80.1 bits (196), Expect = 2.000e-14
Identity = 34/56 (60.71%), Postives = 42/56 (75.00%), Query Frame = 1
Query:  334 SDSHSVYIWHLRQQRLLAVLKGHNDVVSATSWNPAVPGMLASCSDDLTVRIWAPAV 501
            S+ H VY+WH +++  +AVL GH   V+  SWNPAVPGMLAS SDD TVRIW PA+
Sbjct:  585 SEDHKVYVWHRKREMPIAVLTGHTRTVNCVSWNPAVPGMLASASDDGTVRIWGPAL 640          
BLAST of mRNA_P-wetherbeei_contig13384.1.1 vs. uniprot
Match: UPI00109BB1DD (WD repeat-containing protein 26 n=1 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI00109BB1DD)

HSP 1 Score: 78.6 bits (192), Expect = 6.240e-14
Identity = 30/54 (55.56%), Postives = 42/54 (77.78%), Query Frame = 1
Query:  334 SDSHSVYIWHLRQQRLLAVLKGHNDVVSATSWNPAVPGMLASCSDDLTVRIWAP 495
            S+ H+VY+WH++ Q  +A+LKGH+  V+  SWNP++P MLAS SDD TV+IW P
Sbjct:  418 SEDHNVYLWHIKMQEPIAILKGHSRTVNCVSWNPSIPSMLASASDDGTVKIWGP 471          
BLAST of mRNA_P-wetherbeei_contig13384.1.1 vs. uniprot
Match: A0A6A4WHR0_AMPAM (WD repeat-containing protein 26 n=2 Tax=Amphibalanus amphitrite TaxID=1232801 RepID=A0A6A4WHR0_AMPAM)

HSP 1 Score: 77.0 bits (188), Expect = 6.590e-14
Identity = 34/62 (54.84%), Postives = 44/62 (70.97%), Query Frame = 1
Query:  313 ESTGGGSSDSHSVYIWHLRQQRLLAVLKGHNDVVSATSWNPAVPGMLASCSDDLTVRIWAPA 498
            E    GS + + VYIW+ R+++ +AVL+GH + VS  SWNP  P ML SCSDD TVR+WAPA
Sbjct:  202 EFVASGSEECN-VYIWNTRREKPVAVLQGHTNTVSCVSWNPQCPSMLVSCSDDCTVRVWAPA 262          
BLAST of mRNA_P-wetherbeei_contig13384.1.1 vs. uniprot
Match: UPI0012ED789C (WD repeat-containing protein 26-like isoform X2 n=1 Tax=Anarrhichthys ocellatus TaxID=433405 RepID=UPI0012ED789C)

HSP 1 Score: 74.3 bits (181), Expect = 7.820e-14
Identity = 32/55 (58.18%), Postives = 38/55 (69.09%), Query Frame = 1
Query:  334 SDSHSVYIWHLRQQRLLAVLKGHNDVVSATSWNPAVPGMLASCSDDLTVRIWAPA 498
            S+ H VYIWH R +  +A L GH   V+  SWNP +PG+LAS SDD TVRIW PA
Sbjct:   74 SEDHKVYIWHRRSELPIAELTGHTRTVNCVSWNPVLPGLLASASDDGTVRIWGPA 128          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig13384.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JK18_9PHAE8.760e-4750.60F-box domain-containing protein n=1 Tax=Ectocarpus... [more]
D7G5J6_ECTSI1.570e-4649.70F-box domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A183J8L9_9BILA1.190e-1556.45WD_REPEATS_REGION domain-containing protein n=1 Ta... [more]
S4RAG9_PETMA1.510e-1561.82Uncharacterized protein n=1 Tax=Petromyzon marinus... [more]
A0A0L0RX32_ALLM35.700e-1531.89LisH domain-containing protein n=2 Tax=Allomyces m... [more]
A7T5Z7_NEMVE8.500e-1557.41Predicted protein (Fragment) n=2 Tax=Nematostella ... [more]
UPI0014022FE92.000e-1460.71WD repeat-containing protein 26-like isoform X1 n=... [more]
UPI00109BB1DD6.240e-1455.56WD repeat-containing protein 26 n=1 Tax=Exaiptasia... [more]
A0A6A4WHR0_AMPAM6.590e-1454.84WD repeat-containing protein 26 n=2 Tax=Amphibalan... [more]
UPI0012ED789C7.820e-1458.18WD repeat-containing protein 26-like isoform X2 n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig13384contigP-wetherbeei_contig13384:334..1305 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7G5J6
PFAMsF-box-like,WD40
Model size501
Max annot lvl2759|Eukaryota
KEGG koko:K10263,ko:K22382
Hectar predicted targeting categoryother localisation
Exons3
Evalue2.57e-47
EggNOG OGsKOG0293@1|root,KOG0293@2759|Eukaryota
Ec32 ortholog descriptionF-box domain
Ec32 orthologEc-22_000900.2
Descriptionnegative regulation of gluconeogenesis
Cds size501
COG categoryC
BRITEko00000,ko03036,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185983.3153195-CDS-P-wetherbeei_contig13384:333..4921683185983.3153195-CDS-P-wetherbeei_contig13384:333..492Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13384 334..492 -
1683185983.3244483-CDS-P-wetherbeei_contig13384:639..7831683185983.3244483-CDS-P-wetherbeei_contig13384:639..783Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13384 640..783 -
1683185983.3318167-CDS-P-wetherbeei_contig13384:1107..13051683185983.3318167-CDS-P-wetherbeei_contig13384:1107..1305Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13384 1108..1305 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig13384.1.1prot_P-wetherbeei_contig13384.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig13384 334..1305 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig13384.1.1

>prot_P-wetherbeei_contig13384.1.1 ID=prot_P-wetherbeei_contig13384.1.1|Name=mRNA_P-wetherbeei_contig13384.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=167bp
RVVARDLPSLETGGAVLSVAISRDDRLLLVNVRRFLDDGYKTFRGMSPLE
ASLHPSPDVESAVELQVWDVATRKKLFTLGGAHAFTTRDCLFLLFSAQSR
ADAGESTGGGSSDSHSVYIWHLRQQRLLAVLKGHNDVVSATSWNPAVPGM
LASCSDDLTVRIWAPAV
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mRNA from alignment at P-wetherbeei_contig13384:334..1305-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig13384.1.1 ID=mRNA_P-wetherbeei_contig13384.1.1|Name=mRNA_P-wetherbeei_contig13384.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=972bp|location=Sequence derived from alignment at P-wetherbeei_contig13384:334..1305- (Phaeothamnion wetherbeei SAG_119_79)
CGGGTGGTGGCGCGCGACCTGCCGTCCCTCGAGACGGGCGGCGCCGTGCT GAGCGTGGCCATCTCGCGCGACGACCGGCTGTTGCTGGTCAACGTCCGGC GGTTCCTTGACGACGGCTACAAGACGTTCCGGGGCATGTCGCCGCTGGAA GCGTCGCTGCACCCGTCGCCGGACGTCGAGAGCGCCGTCGAGCTGCAGGT GCGCGAAGGGGAGAGGAAGGGAAATGGCATTGAAAGGACAAAAGATGTGC TTATGCCAAACCGTCTTTTGTGGCTGGCTGGACCTCCAGCGCTGCTTTGC AGTATTGTTGGCGTTTTTGCAGTGATCGGAAAATGTTATCATTCCTTAGA TAGCTCAGAATTTGGCACTCTTGATGCTGCACCATCACTCTTGATCGAAC TGAAGTCTCTCTCGGCATCCCATTCCCAAGGATCTTGCTCTCCATTTCAG CAGTTTTCCCTCGTTCAGTTCCAATCTTCCACACTCGTCCGGCGAATCCA ATACTAATTTCCATCGCATCAGGTCTGGGACGTGGCGACGCGGAAGAAGC TCTTCACGCTGGGCGGCGCGCACGCCTTCACGACGCGCGACTGCCTCTTT CTGCTCTTCTCCGCCCAGAGCCGTGCTGACGCCGGTGAATCCACCGGCGG AGGCAGCAGCGACAGCGTTCCCAGTGGCATCGTTGGCCCCTGCGGCGGCG GCAATGGCAGCGGTTTCGGCGGCGGTGGCAGCAATGGCGGCGGCGGCGGT CCCGGCAGCGGCGACGGCGCCGCCGGTGGCGGCGGCAATTACGTGAGCGC CGGCAGCGAGGAGCACTCGGTGTACATCTGGCACCTCCGTCAGCAGCGGC TGCTTGCGGTACTCAAGGGCCACAATGACGTGGTCAGTGCCACCAGCTGG AACCCGGCGGTGCCCGGCATGCTCGCCTCATGCAGCGACGACCTCACCGT CCGTATCTGGGCGCCGGCGGTC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig13384:334..1305-

>mRNA_P-wetherbeei_contig13384.1.1 ID=mRNA_P-wetherbeei_contig13384.1.1|Name=mRNA_P-wetherbeei_contig13384.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=501bp|location=Sequence derived from alignment at P-wetherbeei_contig13384:334..1305- (Phaeothamnion wetherbeei SAG_119_79)
CGGGTGGTGGCGCGCGACCTGCCGTCCCTCGAGACGGGCGGCGCCGTGCT
GAGCGTGGCCATCTCGCGCGACGACCGGCTGTTGCTGGTCAACGTCCGGC
GGTTCCTTGACGACGGCTACAAGACGTTCCGGGGCATGTCGCCGCTGGAA
GCGTCGCTGCACCCGTCGCCGGACGTCGAGAGCGCCGTCGAGCTGCAGGT
CTGGGACGTGGCGACGCGGAAGAAGCTCTTCACGCTGGGCGGCGCGCACG
CCTTCACGACGCGCGACTGCCTCTTTCTGCTCTTCTCCGCCCAGAGCCGT
GCTGACGCCGGTGAATCCACCGGCGGAGGCAGCAGCGACAGCCACTCGGT
GTACATCTGGCACCTCCGTCAGCAGCGGCTGCTTGCGGTACTCAAGGGCC
ACAATGACGTGGTCAGTGCCACCAGCTGGAACCCGGCGGTGCCCGGCATG
CTCGCCTCATGCAGCGACGACCTCACCGTCCGTATCTGGGCGCCGGCGGT
C
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