mRNA_P-wetherbeei_contig1338.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1338.1.1
Unique NamemRNA_P-wetherbeei_contig1338.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig1338.1.1 vs. uniprot
Match: A0A8J9VRT8_BRALA (MFHAS1 protein n=1 Tax=Branchiostoma lanceolatum TaxID=7740 RepID=A0A8J9VRT8_BRALA)

HSP 1 Score: 61.6 bits (148), Expect = 7.940e-8
Identity = 33/85 (38.82%), Postives = 51/85 (60.00%), Query Frame = 1 
Query:  277 VTQNPLKRPPLETAERGLESMRSYFAELGSSGEAPAACSQVKVVFCGHPMAGKSSIIKCLLTRRACALGRESRTLGLKITAWRPE 531
            V  NPL +PP E    G++++R YF EL  S E  +A  ++KVV  G  MAGK+S+++ L++  +     E RT  ++IT W P+
Sbjct:  603 VDGNPLIKPPAEVCSEGIDAIRQYFEELERSDEKVSA--RLKVVVLGEKMAGKTSLVRTLVSGVSTLTEEEDRTHCVEITQWTPD 685
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BLAST of mRNA_P-wetherbeei_contig1338.1.1 vs. uniprot
Match: A0A7S4R596_9STRA (Hypothetical protein (Fragment) n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4R596_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 9.680e-8
Identity = 37/90 (41.11%), Postives = 55/90 (61.11%), Query Frame = 1 
Query:  175 ICELTSLVELLLPNNLLVELPAEVTRLDRLRTLDVTQNPLKRPPLETAERGLESMRSYFAELGSSGEAPAACSQVKVVFCGHPMAGKSSI 444
            I +L SL  L + NN+L E+PA+V  ++ L  LDV+ NPL +PP+ET ERG+ESMR Y+A L S    P    + ++    H + G+  +
Sbjct:  383 ITQLESLRSLKVTNNVLKEIPAQVCEMN-LVELDVSANPLVQPPIETCERGIESMRRYYACLRSEISTPYDYDEERI----HSVVGRKKV 467
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BLAST of mRNA_P-wetherbeei_contig1338.1.1 vs. uniprot
Match: A0A7D9HH86_PARCT (Malignant fibrous histiocytoma-amplified sequence 1 homolog n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9HH86_PARCT)

HSP 1 Score: 59.7 bits (143), Expect = 3.410e-7
Identity = 28/83 (33.73%), Postives = 50/83 (60.24%), Query Frame = 1 
Query:  289 PLKRPPLETAERGLESMRSYFAELGSSGEAPAACSQVKVVFCGHPMAGKSSIIKCLLTRRACALGRESRTLGLKITAWRPELD 537
            PL+ PP+    +G++S+R+YF  + ++    A   ++KV+  G  MAGK+S++K L+T  +  +  + RT G+    W+PE D
Sbjct:  298 PLQVPPVHVCNQGIQSVRNYFEAMKNTKNIHA--KRLKVLVLGESMAGKTSLVKALMTGESTQIDEDDRTFGVVFYHWKPEPD 378
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BLAST of mRNA_P-wetherbeei_contig1338.1.1 vs. uniprot
Match: A0A651DHF9_9CYAN (GTPase (Fragment) n=1 Tax=Nodularia sp. (in: Bacteria) TaxID=2047085 RepID=A0A651DHF9_9CYAN)

HSP 1 Score: 57.4 bits (137), Expect = 2.010e-6
Identity = 31/102 (30.39%), Postives = 56/102 (54.90%), Query Frame = 1 
Query:  217 NLLVELPAEVTRLDRLRTLDVTQNPLKRPPLETAERGLESMRSYFAELGSSGEAPAACSQVKVVFCGHPMAGKSSIIKCLLTRRACALGRESRTLGLKITAW 522
            N + +LP  +  L  L  LD++ NP+++PPLE  ++GLE+++ YF +L + G       + K++  G   AGK+++ K  +      L  E  T G+++  W
Sbjct:    1 NQITKLPDAIASLQNLTHLDLSDNPIEKPPLEVVKKGLEAIKDYFRQLEAEGTDY--LYEAKLLIVGEGGAGKTTLAK-KIQNSDYQLQEEDSTQGIEVIQW 99
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BLAST of mRNA_P-wetherbeei_contig1338.1.1 vs. uniprot
Match: A0A7S2US11_9STRA (Hypothetical protein (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2US11_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 4.030e-6
Identity = 40/108 (37.04%), Postives = 50/108 (46.30%), Query Frame = 1 
Query:   37 LSSIAVLKLGRNQLRALPADLGERGVLQXXXXXXXXXXXXXXXXPEICELTSLVELLLPNNLLVELPAEVTRLDRLRTLDVTQNPLKRPPLETAERGLESMRSYFAEL 360
            LS +  L LG N L  LP DL                             TSL  L + NN+L  +P  V  +  L  LDV+ NPL +PP+ET ERG+ SMR Y+A L
Sbjct:  243 LSKLEYLDLGYNNLAYLPEDLATAW-------------------------TSLRTLKVTNNVLERIPQLVCEMHSLSVLDVSSNPLLQPPIETCERGICSMRRYYACL 325
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BLAST of mRNA_P-wetherbeei_contig1338.1.1 vs. uniprot
Match: B8C1S8_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C1S8_THAPS)

HSP 1 Score: 56.2 bits (134), Expect = 5.560e-6
Identity = 31/63 (49.21%), Postives = 42/63 (66.67%), Query Frame = 1 
Query:  172 EICELTSLVELLLPNNLLVELPAEVTRLDRLRTLDVTQNPLKRPPLETAERGLESMRSYFAEL 360
            E+  L +L  L   NN+L  +P+ +  +D LR LDV+ NPL +PPLET ERG+ESMR Y+  L
Sbjct:  269 ELSSLHTLKTLRCMNNILEIVPSTICDMD-LRVLDVSSNPLLQPPLETCERGIESMRRYYHAL 330
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BLAST of mRNA_P-wetherbeei_contig1338.1.1 vs. uniprot
Match: UPI001B888855 (uncharacterized protein LOC121374371 n=1 Tax=Gigantopelta aegis TaxID=1735272 RepID=UPI001B888855)

HSP 1 Score: 55.5 bits (132), Expect = 1.070e-5
Identity = 45/145 (31.03%), Postives = 63/145 (43.45%), Query Frame = 1 
Query:  169 PEICELTSLVELLLPNNLLVELPAEVTRLDRLRTLDVTQNPL-------------------------KRPPLETAERGLESMRSYFAELGSSGEAPAACSQVKVVFCGHPMAGKSSIIKCLLTRRACALGR--ESRTLGLKITAW 522
            P I  LTSL EL L    +V +P  + RL  LRTL +  NPL                         + PP E   RG ES+++Y   L         C + K++F G   AGK+S++K L++ +    G   E  T G+ I  W
Sbjct: 2874 PAIFLLTSLEELYLDYQAIVAVPVHMCRLVNLRTLSLAHNPLLESLPGSLGHLPNIKSIDLLSCPSLRTPPNEVVSRGFESVKAYLKRLAGGFTE---CRRTKLMFVGLGGAGKTSLLKALMSSKKKTDGTKGEDITDGIVIQPW 3015
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BLAST of mRNA_P-wetherbeei_contig1338.1.1 vs. uniprot
Match: A0A6P4ZH59_BRABE (malignant fibrous histiocytoma-amplified sequence 1 homolog n=1 Tax=Branchiostoma belcheri TaxID=7741 RepID=A0A6P4ZH59_BRABE)

HSP 1 Score: 52.8 bits (125), Expect = 7.990e-5
Identity = 30/89 (33.71%), Postives = 52/89 (58.43%), Query Frame = 1 
Query:  259 RLRTLDVTQNPLKRPPLETAERGLESMRSYFAELGSSGEAPAACSQVKVVFCGHPMAGKSSIIKCLLTRRACALGRE-SRTLGLKITAW 522
            +L+ L++  NPL +PPLET + G+ ++ +Y  EL  +    +    +K+V  G  MAGK+S++  L TR    L +E +RT  +++  W
Sbjct:  142 KLKHLNLDNNPLVQPPLETCQEGISAIAAYQRELEEARMTVSVPPCLKIVVLGRLMAGKTSLVAAL-TRAVSRLAKEEARTHCMEVKRW 229
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1338.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A8J9VRT8_BRALA7.940e-838.82MFHAS1 protein n=1 Tax=Branchiostoma lanceolatum T... [more]
A0A7S4R596_9STRA9.680e-841.11Hypothetical protein (Fragment) n=2 Tax=Ditylum br... [more]
A0A7D9HH86_PARCT3.410e-733.73Malignant fibrous histiocytoma-amplified sequence ... [more]
A0A651DHF9_9CYAN2.010e-630.39GTPase (Fragment) n=1 Tax=Nodularia sp. (in: Bacte... [more]
A0A7S2US11_9STRA4.030e-637.04Hypothetical protein (Fragment) n=1 Tax=Attheya se... [more]
B8C1S8_THAPS5.560e-649.21Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]
UPI001B8888551.070e-531.03uncharacterized protein LOC121374371 n=1 Tax=Gigan... [more]
A0A6P4ZH59_BRABE7.990e-533.71malignant fibrous histiocytoma-amplified sequence ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1338contigP-wetherbeei_contig1338:328..1478 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog7739.XP_002614028.1
PFAMsCOR,LRR_1,LRR_4,LRR_8,Peptidase_C14,Roc
Model size537
Max annot lvl33154|Opisthokonta
Hectar predicted targeting categoryother localisation
Exons2
Evalue3.28e-10
EggNOG OGsCOG4886@1|root,KOG3573@1|root,KOG0619@2759|Eukaryota,KOG3573@2759|Eukaryota,39TV9@33154|Opisthokonta,3BD7Q@33208|Metazoa,3CYH1@33213|Bilateria,48BK8@7711|Chordata
Descriptionnegative regulation of toll-like receptor 2 signaling pathway
Cds size537
COG categoryO
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185983.1981683-CDS-P-wetherbeei_contig1338:327..7591683185983.1981683-CDS-P-wetherbeei_contig1338:327..759Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1338 328..759 -
1683185983.2068121-CDS-P-wetherbeei_contig1338:1373..14781683185983.2068121-CDS-P-wetherbeei_contig1338:1373..1478Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1338 1374..1478 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1338.1.1prot_P-wetherbeei_contig1338.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1338 328..1478 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1338.1.1

>prot_P-wetherbeei_contig1338.1.1 ID=prot_P-wetherbeei_contig1338.1.1|Name=mRNA_P-wetherbeei_contig1338.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=179bp
MPPLRPLVDRLGLSSIAVLKLGRNQLRALPADLGERGVLQSLTVLDVGFN
NLHRLPPEICELTSLVELLLPNNLLVELPAEVTRLDRLRTLDVTQNPLKR
PPLETAERGLESMRSYFAELGSSGEAPAACSQVKVVFCGHPMAGKSSIIK
CLLTRRACALGRESRTLGLKITAWRPELD
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mRNA from alignment at P-wetherbeei_contig1338:328..1478-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1338.1.1 ID=mRNA_P-wetherbeei_contig1338.1.1|Name=mRNA_P-wetherbeei_contig1338.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1151bp|location=Sequence derived from alignment at P-wetherbeei_contig1338:328..1478- (Phaeothamnion wetherbeei SAG_119_79)
ATGCCGCCGCTGCGGCCGCTCGTTGACCGGCTGGGGTTGAGCAGCATCGC
CGTGCTCAAGCTGGGGCGGAACCAGCTGCGGGCGCTGCCGGCGGACCTCG
GGGAGGTGATGCCGCACGTGACGGAGATTGATGTGAAGACGAACGAGTTC
CGGACCTTTCCGGACGCCGATGCACTACCGCGGGGCCTTGAGCGGCTCGT
AATCTACAACAACAAGTGAGCGGGGAAATGCTTCGTTGCAGGCTGGCAGG
TTTTGTTTTACTTTTGGCTTTTATTTGACGAATTGGAGTGTTTCTCAAGT
CTTTTTGCTGCGACTTGTTGTTGGCCGCGGGTTCTCATTTTTTCTGTACT
GGTGATGACCTTGTTTCCGGACTAGCATTTCGGCGGAAGTTTTTTCCTGG
CAGAGGTTCTCTGTTTCCCTCGTCCATGAGAGTAAAGCTTGCTGCTTTCT
ATTGTCCCTTTTCTGGCATTTTGAGCCTTCAAACTACCCGTCGTCGGGAA
AGAGATTAAAGAGGAGGCTTCCGTTTCCTGCCTTCGTTCCAGCCGTCGTC
AACCCCAACTATTTCCTCTGCGCGTCCAACTCTTGCGTCTTTCTTCCTTC
GTCTCTTCTCCTCTTCCGCTTTCCTCTCCTCTCTCTATTTCTTCGTTTCC
CTCTTTTTATCTTCCTCCCTCCCGCCGTCCAGGCTGGAGACGCTAGATCT
GCCCGAGTCCCTGCGAGAGCGCGGCGTCCTCCAGTCTCTCACGGTGCTTG
ACGTCGGCTTCAACAATCTCCACCGCCTGCCCCCCGAAATCTGCGAGCTG
ACTTCCCTCGTCGAACTGCTTTTGCCCAACAACCTGCTGGTAGAGCTGCC
GGCAGAGGTGACGCGGCTGGACCGCCTGCGCACGCTGGACGTGACTCAGA
ACCCTCTGAAACGGCCGCCGCTGGAGACGGCTGAGCGCGGGCTCGAGAGC
ATGCGGAGCTACTTTGCCGAGCTGGGATCTAGCGGGGAGGCGCCGGCGGC
CTGCAGCCAGGTCAAGGTGGTCTTCTGCGGCCACCCGATGGCCGGCAAGA
GCAGCATCATCAAGTGCCTGCTGACGCGCCGGGCCTGTGCCCTCGGCCGC
GAGAGCCGCACGCTGGGGCTCAAGATCACCGCTTGGCGGCCCGAGCTCGA
C
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1338:328..1478-

>mRNA_P-wetherbeei_contig1338.1.1 ID=mRNA_P-wetherbeei_contig1338.1.1|Name=mRNA_P-wetherbeei_contig1338.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=537bp|location=Sequence derived from alignment at P-wetherbeei_contig1338:328..1478- (Phaeothamnion wetherbeei SAG_119_79)
ATGCCGCCGCTGCGGCCGCTCGTTGACCGGCTGGGGTTGAGCAGCATCGC
CGTGCTCAAGCTGGGGCGGAACCAGCTGCGGGCGCTGCCGGCGGACCTCG
GGGAGCGCGGCGTCCTCCAGTCTCTCACGGTGCTTGACGTCGGCTTCAAC
AATCTCCACCGCCTGCCCCCCGAAATCTGCGAGCTGACTTCCCTCGTCGA
ACTGCTTTTGCCCAACAACCTGCTGGTAGAGCTGCCGGCAGAGGTGACGC
GGCTGGACCGCCTGCGCACGCTGGACGTGACTCAGAACCCTCTGAAACGG
CCGCCGCTGGAGACGGCTGAGCGCGGGCTCGAGAGCATGCGGAGCTACTT
TGCCGAGCTGGGATCTAGCGGGGAGGCGCCGGCGGCCTGCAGCCAGGTCA
AGGTGGTCTTCTGCGGCCACCCGATGGCCGGCAAGAGCAGCATCATCAAG
TGCCTGCTGACGCGCCGGGCCTGTGCCCTCGGCCGCGAGAGCCGCACGCT
GGGGCTCAAGATCACCGCTTGGCGGCCCGAGCTCGAC
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