mRNA_P-wetherbeei_contig13376.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig13376.1.1
Unique NamemRNA_P-wetherbeei_contig13376.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig13376.1.1 vs. uniprot
Match: A0A383C970_9ZZZZ (Uncharacterized protein (Fragment) n=1 Tax=marine metagenome TaxID=408172 RepID=A0A383C970_9ZZZZ)

HSP 1 Score: 74.3 bits (181), Expect = 1.210e-14
Identity = 45/106 (42.45%), Postives = 56/106 (52.83%), Query Frame = 3
Query:    3 CVLRKGGTVKCFGV-------VYNTEAAGDNASEMGDTLPAWNLGTACTA--------HLCPF--GGQIKCWGYNASGQLGQESEEVVWIGDESDELGDALLAVDL 269
            C L    +VKC+G        + +T   GDN+SEMGD LP  NLGT  TA          C     G IKCWG N+ G LG      + +GD+SDE+GD L A+DL
Sbjct:   24 CALLDNASVKCWGYNLRGQLGIGSTNHMGDNSSEMGDNLPVVNLGTGRTATAIDARNISTCAILDNGSIKCWGCNSDGNLGYG--HTILLGDDSDEMGDNLSAIDL 127          
BLAST of mRNA_P-wetherbeei_contig13376.1.1 vs. uniprot
Match: A0A7C1UEQ2_9ACTN (Uncharacterized protein (Fragment) n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A7C1UEQ2_9ACTN)

HSP 1 Score: 78.6 bits (192), Expect = 1.510e-14
Identity = 46/106 (43.40%), Postives = 59/106 (55.66%), Query Frame = 3
Query:    3 CVLRKGGTVKCFGVVY-------NTEAAGDNASEMGDTLPAWNLGTACTAHLCPFGGQ----------IKCWGYNASGQLGQESEEVVWIGDESDELGDALLAVDL 269
            C L   GTVKCFG  +       +T+  GD+  EMGD+LP  +LGT  TA     G Q          +KCWG NA GQLGQ + E  W+GD+  E+GD L A+D+
Sbjct:  369 CALLDNGTVKCFGWNFWGQLGQGHTDDIGDDPGEMGDSLPPVDLGTGRTAVAISAGSQFACALLDNSELKCWGNNAGGQLGQGNFE--WVGDDPAEMGDNLPAIDI 472          
BLAST of mRNA_P-wetherbeei_contig13376.1.1 vs. uniprot
Match: A0A6I3AX41_9ACTN (Uncharacterized protein n=3 Tax=root TaxID=1 RepID=A0A6I3AX41_9ACTN)

HSP 1 Score: 78.6 bits (192), Expect = 1.520e-14
Identity = 49/107 (45.79%), Postives = 58/107 (54.21%), Query Frame = 3
Query:    3 CVLRKGGTVKCFGVVYN-------TEAAGDNASEMGDTLPAWNLGTACTAHLCPFGG----------QIKCWGYNASGQLGQESEEVVWIGDESDELGDALLAVDLG 272
            CVL    T+KC+G   N       T+  GDN+SEMGD+LPA +LGT  TA     GG           +KCWGY+A GQLG         GD   E+GD LLAVDLG
Sbjct:  337 CVLLDNNTIKCWGYNGNADLGLGDTDNRGDNSSEMGDSLPAVDLGTGRTAKAVSSGGGGTCSILDNDTVKCWGYSAQGQLGYGDTNN--RGDVGGEMGDNLLAVDLG 441          
BLAST of mRNA_P-wetherbeei_contig13376.1.1 vs. uniprot
Match: A0A3T0RSR7_9PROT (Uncharacterized protein n=1 Tax=Bdellovibrio sp. qaytius TaxID=1916293 RepID=A0A3T0RSR7_9PROT)

HSP 1 Score: 78.6 bits (192), Expect = 1.570e-14
Identity = 49/112 (43.75%), Postives = 63/112 (56.25%), Query Frame = 3
Query:    3 CVLRKGGTVKCFGVVYNTE---------AAGDNASEMGDTLPAWNLGTACTA---------HLCPF--GGQIKCWGYNASGQLGQESEEVVWIGDESDELGDALLAVDLGAN 278
            C +   G+VKC+G   NTE         + GD A EMGD LPA NLGT  TA         H C       +KCWG N+SGQLGQE      +GD++ E+GD+L A++LGA+
Sbjct:  483 CAIIDNGSVKCWG--RNTEGQLGQGHTNSLGDGAGEMGDNLPAINLGTGRTATQISVSYDKHTCALLDNATVKCWGKNSSGQLGQEHANN--LGDDAGEMGDSLPAINLGAS 590          
BLAST of mRNA_P-wetherbeei_contig13376.1.1 vs. uniprot
Match: A0A382ZHR9_9ZZZZ (Uncharacterized protein (Fragment) n=1 Tax=marine metagenome TaxID=408172 RepID=A0A382ZHR9_9ZZZZ)

HSP 1 Score: 75.1 bits (183), Expect = 1.880e-14
Identity = 49/107 (45.79%), Postives = 56/107 (52.34%), Query Frame = 3
Query:    3 CVLRKGGTVKCFGVVY-------NTEAAGDNASEMGDTLPAWNLGTACTA--------HLCPF--GGQIKCWGYNASGQLGQESEEVVWIGDESDELGDALLAVDLG 272
            C +   G+VKC+G          NT   GDN+SEMGD L A +LGT  TA        H C       IKCWG NASGQLG         GD S E+GD+L AVDLG
Sbjct:   70 CFMLDNGSVKCWGKNNLGQLGQGNTNTRGDNSSEMGDNLTAIDLGTGRTATAIAAGNHHTCAILDNASIKCWGSNASGQLGLGDTST--RGDGSGEMGDSLTAVDLG 174          
BLAST of mRNA_P-wetherbeei_contig13376.1.1 vs. uniprot
Match: A0A0K1EHP4_CHOCO (Uncharacterized protein n=2 Tax=Chondromyces crocatus TaxID=52 RepID=A0A0K1EHP4_CHOCO)

HSP 1 Score: 77.4 bits (189), Expect = 3.860e-14
Identity = 48/108 (44.44%), Postives = 57/108 (52.78%), Query Frame = 3
Query:    3 CVLRKGGTVKCFGV-------VYNTEAAGDNASEMGDTLPAWNLGTACTA--------HLCPF--GGQIKCWGYNASGQLGQESEEVVWIGDESDELGDALLAVDLGA 275
            C L  GG+VKC+G        + +T   GD   EMGD LP  NLGT  TA        H C     G +KCWG+N  G+LG    +    GD   E+GDALLAVDLGA
Sbjct:  264 CALLGGGSVKCWGANTSGQLGLGDTAPRGDGPGEMGDALPTVNLGTGRTALAIGGGDRHTCALLDDGSVKCWGFNTGGKLGLG--DTAPRGDGPGEMGDALLAVDLGA 369          
BLAST of mRNA_P-wetherbeei_contig13376.1.1 vs. uniprot
Match: A0A4P2PVS9_SORCE (Uncharacterized protein n=2 Tax=Sorangium cellulosum TaxID=56 RepID=A0A4P2PVS9_SORCE)

HSP 1 Score: 77.4 bits (189), Expect = 4.020e-14
Identity = 51/124 (41.13%), Postives = 63/124 (50.81%), Query Frame = 3
Query:    3 CVLRKGGTVKCFGV-VYNTEAAGD------NASEMGDTLPAWNLGTACTAHLCPFGGQ----------IKCWGYNASGQLGQESEEVVWIGDESDELGDALLAVDLGANASIEREQPRSPRAVF 323
            C + +GG VKC+G   Y     GD      +A+   D LP  NLGT  TA     GG           +KCWGYNASGQLG E E  + IGD+  E+GD L  VDLG N       P + +A+F
Sbjct:   95 CAIFEGGFVKCWGDNAYGQLGLGDTLDRGVSAATTYDDLPFVNLGTGRTAKAIATGGDHTCALLDDDTVKCWGYNASGQLGLELESYLNIGDQPYEMGDNLPTVDLGTNGL---GAPHTAKAIF 215          
BLAST of mRNA_P-wetherbeei_contig13376.1.1 vs. uniprot
Match: A0A383CPK5_9ZZZZ (Uncharacterized protein (Fragment) n=1 Tax=marine metagenome TaxID=408172 RepID=A0A383CPK5_9ZZZZ)

HSP 1 Score: 75.5 bits (184), Expect = 4.030e-14
Identity = 46/113 (40.71%), Postives = 62/113 (54.87%), Query Frame = 3
Query:    3 CVLRKGGTVKCFGV-------VYNTEAAGDNASEMGDTLPAWNLGTACTA--------HLCPF--GGQIKCWGYNASGQLGQESEEVVWIGDESDELGDALLAVDLGANASIE 290
            C +   G+VKC+G        + NT + GDNASEMGD+LP  +LGT  TA        H C       +KCWG NASGQLG    +    GD S E+GD+L  V++G+  + +
Sbjct:   53 CFMLDNGSVKCWGSNGSGQLGLGNTTSRGDNASEMGDSLPVVDLGTGKTARAIEAGDNHTCAILDNASVKCWGSNASGQLGLGDTDS--RGDNSSEMGDSLPIVNMGSGRTAK 163          
BLAST of mRNA_P-wetherbeei_contig13376.1.1 vs. uniprot
Match: A0A7Z9UFE8_9BACT (Big_5 domain-containing protein n=1 Tax=Candidatus Marinimicrobia bacterium TaxID=2026760 RepID=A0A7Z9UFE8_9BACT)

HSP 1 Score: 77.0 bits (188), Expect = 5.310e-14
Identity = 49/108 (45.37%), Postives = 58/108 (53.70%), Query Frame = 3
Query:    3 CVLRKGGTVKCFGV-------VYNTEAAGDNASEMGDTLPAWNLGTACTA--------HLCPF--GGQIKCWGYNASGQLGQESEEVVWIGDESDELGDALLAVDLGA 275
            C +   G+VKC+G        + NT   GDN+SEMGD LP  +LGT  TA        H C       IKCWG NASGQLG         GDES E+GD L A+DLG+
Sbjct:  260 CYMLDNGSVKCWGKNNLGQLGLGNTSNRGDNSSEMGDNLPVVDLGTGRTAKAIAAGDYHTCAILDNASIKCWGANASGQLGIGDTNN--RGDESSEMGDILPAIDLGS 365          
BLAST of mRNA_P-wetherbeei_contig13376.1.1 vs. uniprot
Match: A0A836BRD1_9CHLO (Uncharacterized protein n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A836BRD1_9CHLO)

HSP 1 Score: 77.0 bits (188), Expect = 5.760e-14
Identity = 46/106 (43.40%), Postives = 63/106 (59.43%), Query Frame = 3
Query:    6 VLRKGGTVKCFGV-VY------NTEAAGDNASEMGDTLPAWNLGTACT-------AHLCPF---GGQIKCWGYNASGQLGQESEEVVWIGDESDELGDALLAVDLG 272
            +L+ G  +KC+G  +Y      +T+A GDN  EMGD LP  +LG   T       AH+C     GG++KCWG+ ASG+LGQ   + V  GD+  E+GDAL  +DLG
Sbjct: 3021 ILQPGSVLKCWGSNMYGQLGQGHTDALGDNPGEMGDALPPIDLGKGLTPTAIAVGAHVCAILQPGGKLKCWGWGASGELGQGRTDNV--GDQPGEMGDALPPIDLG 3124          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig13376.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A383C970_9ZZZZ1.210e-1442.45Uncharacterized protein (Fragment) n=1 Tax=marine ... [more]
A0A7C1UEQ2_9ACTN1.510e-1443.40Uncharacterized protein (Fragment) n=1 Tax=Acidimi... [more]
A0A6I3AX41_9ACTN1.520e-1445.79Uncharacterized protein n=3 Tax=root TaxID=1 RepID... [more]
A0A3T0RSR7_9PROT1.570e-1443.75Uncharacterized protein n=1 Tax=Bdellovibrio sp. q... [more]
A0A382ZHR9_9ZZZZ1.880e-1445.79Uncharacterized protein (Fragment) n=1 Tax=marine ... [more]
A0A0K1EHP4_CHOCO3.860e-1444.44Uncharacterized protein n=2 Tax=Chondromyces croca... [more]
A0A4P2PVS9_SORCE4.020e-1441.13Uncharacterized protein n=2 Tax=Sorangium cellulos... [more]
A0A383CPK5_9ZZZZ4.030e-1440.71Uncharacterized protein (Fragment) n=1 Tax=marine ... [more]
A0A7Z9UFE8_9BACT5.310e-1445.37Big_5 domain-containing protein n=1 Tax=Candidatus... [more]
A0A836BRD1_9CHLO5.760e-1443.40Uncharacterized protein n=1 Tax=Edaphochlamys deba... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig13376contigP-wetherbeei_contig13376:455..839 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size368
Hectar predicted targeting categorymitochondrion
Exons2
Cds size366
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185983.04272-CDS-P-wetherbeei_contig13376:454..5831683185983.04272-CDS-P-wetherbeei_contig13376:454..583Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13376 455..583 +
1683185983.0553372-CDS-P-wetherbeei_contig13376:601..8381683185983.0553372-CDS-P-wetherbeei_contig13376:601..838Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13376 602..838 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig13376.1.1prot_P-wetherbeei_contig13376.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig13376 455..838 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig13376.1.1

>prot_P-wetherbeei_contig13376.1.1 ID=prot_P-wetherbeei_contig13376.1.1|Name=mRNA_P-wetherbeei_contig13376.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=122bp
LACYARAALSSALASYTTQKPLATTPQRWAIPCLPGIWVPRAPHICALLE
ARSSAGDTMRLVSLARRAKRWCGSATKATSLETPCWPLTLERMRQSNGSN
RGRRGRFSYLRPLGRARCKMLG
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mRNA from alignment at P-wetherbeei_contig13376:455..839+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig13376.1.1 ID=mRNA_P-wetherbeei_contig13376.1.1|Name=mRNA_P-wetherbeei_contig13376.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=385bp|location=Sequence derived from alignment at P-wetherbeei_contig13376:455..839+ (Phaeothamnion wetherbeei SAG_119_79)
CTTGCGTGCTACGCAAGGGCGGCACTGTCAAGTGCTTTGGCGTCGTATAC AACACAGAAGCCGCTGGCGACAACGCCTCAGAGATGGGCGATACCTTGCC TGCCTGGAATCTGGGTACCGCGTGCACCGGTTGACAGCGACTTGCAGCAC ATCTGTGCCCTTTTGGAGGCCAGATCAAGTGCTGGGGATACAATGCGTCT GGTCAGCTTGGCCAGGAGAGCGAAGAGGTGGTGTGGATCGGCGACGAAAG CGACGAGCTTGGAGACGCCTTGCTGGCCGTTGACCTTGGAGCGAATGCGT CAATCGAACGGGAGCAACCGCGGTCGCCGCGGGCGGTTTTCATACCTGCG CCCTCTTGGACGGGCGAGATGTAAAATGCTGGGGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig13376:455..839+

>mRNA_P-wetherbeei_contig13376.1.1 ID=mRNA_P-wetherbeei_contig13376.1.1|Name=mRNA_P-wetherbeei_contig13376.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=366bp|location=Sequence derived from alignment at P-wetherbeei_contig13376:455..839+ (Phaeothamnion wetherbeei SAG_119_79)
CTTGCGTGCTACGCAAGGGCGGCACTGTCAAGTGCTTTGGCGTCGTATAC
AACACAGAAGCCGCTGGCGACAACGCCTCAGAGATGGGCGATACCTTGCC
TGCCTGGAATCTGGGTACCGCGTGCACCGCACATCTGTGCCCTTTTGGAG
GCCAGATCAAGTGCTGGGGATACAATGCGTCTGGTCAGCTTGGCCAGGAG
AGCGAAGAGGTGGTGTGGATCGGCGACGAAAGCGACGAGCTTGGAGACGC
CTTGCTGGCCGTTGACCTTGGAGCGAATGCGTCAATCGAACGGGAGCAAC
CGCGGTCGCCGCGGGCGGTTTTCATACCTGCGCCCTCTTGGACGGGCGAG
ATGTAAAATGCTGGGG
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