mRNA_P-wetherbeei_contig13373.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig13373.1.1
Unique NamemRNA_P-wetherbeei_contig13373.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig13373.1.1 vs. uniprot
Match: D8LK54_ECTSI (Calpain catalytic domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK54_ECTSI)

HSP 1 Score: 293 bits (751), Expect = 6.350e-91
Identity = 152/292 (52.05%), Postives = 193/292 (66.10%), Query Frame = 1
Query:    1 QVYVCRVFPDENFKQYCVHGEWSGKTAGGAASQQRRGSATRAQQDGQAVVKDALRRSSLVDIQPDSDPFWFNNPQYRLTTEAPPSDDYNDSSSGPNDGRGGNNTSLSPQRQQRAPKPVEVYISLMQQDRRSASLHARDYHPIGFEVLRTRRSANHPRLWTRDPEAVVVASARASFAASAMGAGGLGPGAAGAAGREVTKGGLKLSPQYAYVIVPHPMEQGREGKFTLRIFSSAAIRVEPVPETTSIYLRGAWERGSDRDTAGGPLKVVVDESKGARSNPKWCQNPQYWLTLP 876
            +VY CRVFPDE+++QYC+HGEWSGKTAGG+A   RRGS +R Q+DGQ  +KD+LRR S+VDIQ D DP+WFNNPQYRLT +                                  + VEVYISLMQQDRRSA+ H R+ + +GFEV++T+R   H R+W +  + V+  S   +F ++                REVT+  +KL P+YAY IVPHPMEQ REGKFTLRIFS   + VEPV ET + YL G+W+R SDRDTAGGPL++V DE+KG ++NPKWCQNPQY L +P
Sbjct:  333 KVYQCRVFPDEDYRQYCIHGEWSGKTAGGSAKPMRRGSVSRLQKDGQDKMKDSLRRESVVDIQDDGDPYWFNNPQYRLTAD----------------------------------ETVEVYISLMQQDRRSAN-HLRENYRVGFEVVQTKRHTTHKRIWEQKQDDVIADSHENTFGSTRS-------------EREVTRASVKLDPRYAYNIVPHPMEQNREGKFTLRIFSRKDVCVEPVTETFTSYLHGSWDRTSDRDTAGGPLRLV-DENKGVKNNPKWCQNPQYLLNIP 575          
BLAST of mRNA_P-wetherbeei_contig13373.1.1 vs. uniprot
Match: A0A836CKR5_9STRA (Calpain catalytic domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKR5_9STRA)

HSP 1 Score: 263 bits (673), Expect = 1.550e-78
Identity = 155/332 (46.69%), Postives = 194/332 (58.43%), Query Frame = 1
Query:    4 VYVCRVFPD-ENFKQYCVHGEWSGKTAGGAASQQRRGSATRAQQDGQAVVKDALRRSSLVDIQPDSDPFWFNNPQYRLTTEAPPSDDYNDSSSGPNDGRGGNNTSLSPQRQQRAPKPVEVYISLMQQDRRSASLHARDYHPIGFEVLRTRR---------SANHPRLWTRDPEAVVVASARASFAASAMGAGGLGPGAAGAAGREVTKGGLKLSPQYAYVIVPHPMEQGREGKFTLRIFSSAAIRVEPVPETTSIYLRGAWERGSDRDTAGGPLKVVVD--------------ESKGARSNPKWCQNPQYWLTLPPELSADDSVDIKIVLRR 927
            VYVCRVFPD   F+QYCVHGEW+G   G AA+            D    V ++LRR+++VD+QPD DPFWFNNPQYRLT +                                  KP EV ISLMQQDRRSAS + R+ H +GFEVLR RR         +A H R+W R  E VV  SARASFA +                REV K G+ L P+ AYV+VP   E GREGKFTLR+F+ + + +EPVPET ++YLRG W+R S+RDTAGGPL++  +              E +G R+NPKWCQNPQ+WL +P + +A DSVD+K+VLRR
Sbjct:  364 VYVCRVFPDGAGFRQYCVHGEWAGDAMGLAAAPAXXXXXXXXXXD---AVAESLRRTTMVDVQPDGDPFWFNNPQYRLTVD----------------------------------KPTEVLISLMQQDRRSAS-YLRENHGVGFEVLRARRRGGSXXXXXAAPHARVWERRAEDVVTDSARASFAPARP-------------EREVAKAGVTLDPRLAYVVVPTCAELGREGKFTLRVFAQSDVVMEPVPETHTLYLRGTWDRTSERDTAGGPLRLPEEAPSGSXXXXXXXXKEGRGVRNNPKWCQNPQFWLRIP-DGAAYDSVDVKLVLRR 643          
BLAST of mRNA_P-wetherbeei_contig13373.1.1 vs. uniprot
Match: A0A7S2D2G9_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2D2G9_9STRA)

HSP 1 Score: 151 bits (381), Expect = 1.210e-36
Identity = 100/322 (31.06%), Postives = 149/322 (46.27%), Query Frame = 1
Query:    1 QVYVCRVFPDENFKQYCVHGEWSGKTAGGAASQQRRGSATR-------------------AQQDGQAVVKDALRRSSLVDIQPDSDPFWFNNPQYRLTTEAPPSDDYNDSSSGPNDGRGGNNTSLSPQRQQRAPKPVEVYISLMQQDRRSASLHARDYHPIGFEVLRTRRSANHPRLWTRDPEAVVVASARASFAASAMGAGGLGPGAAGAAGREVTKGGLKLSPQYAYVIVPHPMEQGREGKFTLRIFSSAAIRVEPVPETTSIYLRGAWERGSDRDTAGGPLKVVVDESKGARSNPKWCQNPQYWLTLPPELSADDSVDI 909
            +++VCRVFPD+ ++QYC+   WSGK+AG                                A +  + V K A   +    ++ D +  WFNNPQY++T                                  A +P  ++ISLMQ+DRR+ +   +D   IGFEV++  +   H R W  + + VV  +A        +              REV    + L P   Y IVPH  +QG+E  + LRIFS   + ++ VP++ S+ L GAW+R ++RD+AGGPL V     K   SNPKWC+NPQ+ L +P  +    SVD+
Sbjct:  353 KIHVCRVFPDDEYRQYCIQSSWSGKSAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASEYPKLVAKHARADA----VKADGNDTWFNNPQYQVT----------------------------------AAEPCNIHISLMQEDRRTDT-RLKDNFQIGFEVVQM-KDPEHKRAWGPNDD-VVFDTASNPLNGDLL-------------QREVCGSNIHLEPGTTYNIVPHAAQQGKESPYILRIFSPVDLEIKEVPQSHSVTLPGAWQRVTERDSAGGPLLVPGSGGKSCASNPKWCENPQFVLRMPKHVPTSSSVDV 620          
BLAST of mRNA_P-wetherbeei_contig13373.1.1 vs. uniprot
Match: A0A7S1U0F0_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U0F0_9STRA)

HSP 1 Score: 146 bits (368), Expect = 6.410e-35
Identity = 115/377 (30.50%), Postives = 157/377 (41.64%), Query Frame = 1
Query:    4 VYVCRVFPDENFKQYCVHGEWSGKTAGGAASQQRR-----------------------GSATRAQQDGQAVV-----KDALRRSSLVDIQ------PDSDPFWFNNPQYRLTTEAPPSDDYNDSSSGPNDGRGGNNTSLSPQRQQRAPKPVEVYISLMQQDRRSASLHARDYHPIGFEVLRTRRSANHP--RLWTRDPEAVVVASARASFAASAMGAGGLGPGAAGAAGREVTKGGLKLSPQYAYVIVPHPMEQGREGKFTLRIFSSAAIRVEPVPETTSIYLRGAWERGSDRDTAGGPLKVVVDESKGA-----------------------------RSNPKWCQNPQYWLTLPPELSAD---DSVDIKIVLRRT 930
            ++VCR+F D+ + QYCV G+W+GKTA G   +  R                       G  +    DG A       K+A   S     +       D +PFWFNNPQ+R+ T +                                 +P  +Y+SL Q+  R A    R    IGF +L+    A     R+W       V+A +     AS    G            EV    + L P   YVIVPH  ++ REG+F LR+F  +A+ +  V ET+S+YL GAWER  ++D+ GGP+ VV +ESK A                             + NPKWCQNPQYW+    E S D    S  IK V+RRT
Sbjct:  354 LFVCRIFDDDAYYQYCVEGDWAGKTAAGPPRRPLRAAQGVLDFNAVYPQGKKNEKKGAGGISPKASDGAAAPSANGQKEAYAESLARHFEGSKMLCEDGEPFWFNNPQFRVVTGS---------------------------------RPCRIYVSLQQRQGRRAGAAKRVGPSIGFHLLKIDSEAEGVLGRIWELKD---VIADSAQDLMASKEALG------------EVVCQDVTLEPDTKYVIVPHAGQKNREGRFCLRVFCRSALDIASVTETSSVYLPGAWERTPEQDSCGGPVLVVEEESKPANKAGMPLTPPPTEPEEEGAQPETVTLLKMKQNPKWCQNPQYWVRFA-ETSDDPLAQSATIKFVVRRT 681          
BLAST of mRNA_P-wetherbeei_contig13373.1.1 vs. uniprot
Match: A0A024UDH4_9STRA (Calpain catalytic domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UDH4_9STRA)

HSP 1 Score: 113 bits (283), Expect = 8.380e-24
Identity = 94/312 (30.13%), Postives = 136/312 (43.59%), Query Frame = 1
Query:    1 QVYVCRVFPDENFKQYCVHGEWSGKTAGGAASQQRRGSATRAQQDGQAVVKDALRRSSLVDIQPDSDPFWFNNPQYRLTTEAPPSDDYNDSSSGPNDGRGGNNTSLSPQRQQRAPKPVEVYISLMQQDRRSASLHARDYHPIGFEVLRTRRSA-NHPRLWTRDPEAVVVASARASFAASAMGAGGLGPGAAGAAGREVTKGGLKLSPQYAYVIVPHPMEQGREGKFTLRIFSSAAIRVEPVPETTSIYLRGAWERGSD-RDTAGGPLKVVVDESKGARSNPKWCQNPQYWLTLPPELSADDSVDIKIVLRRT 930
            ++Y+ R FP   F+QYCV GEW G+ A G   +      T       +       R  LV+  PDS+P WF NPQYRL                                     +   V +SL+Q+D R   +   D   I F +L  ++ A     +W  D  AVV      S+ + A     LG  +AG   RE++KG + L P  AY+ +P+    G E +F  R+FS   ++++ +    ++ ++G W    +    AGGPL   V        N  WCQNPQY L      +A   VDIK+VL+RT
Sbjct:  361 ELYIVRNFPS-TFQQYCVRGEWVGQAAAGPPMKPPPSVET----SSASAPSAPSARKWLVE--PDSEPSWFLNPQYRLVVT----------------------------------EKTSVVLSLLQRDFR---VFGGDNFGINFVLLEVKKRALASSMVWEFDKTAVVAEGH--SYPSGAAATAALGDKSAGHPEREISKGNVVLEPDVAYIFIPYTDHGGVEMEFFFRVFSPKPVQIDSLTPLNTLIVQGRWRVDDEGHSNAGGPL---VQNLTTGMENLTWCQNPQYVLR---SFAASKPVDIKLVLKRT 620          
BLAST of mRNA_P-wetherbeei_contig13373.1.1 vs. uniprot
Match: A0A482RX54_9ARCH (Calpain catalytic domain-containing protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RX54_9ARCH)

HSP 1 Score: 103 bits (256), Expect = 1.810e-20
Identity = 93/321 (28.97%), Postives = 144/321 (44.86%), Query Frame = 1
Query:    4 VYVCRVFPDENFKQYCVHGEWSGKTAGGAAS--QQRRGSATRAQQDGQAVVKDALRRSSLVDIQPDSDPFWFNNPQYRLTTEAPPS-----------DDYNDSSSGPNDGRGGNNTSLSPQRQQRAPKPVEVYISLMQQDRRSASLHARDYHPIGFEVLRTRRSANHPRLWTRDPEAVVVASARASFAASAMGAGGLGPGAAGAAGREVTKGGLKLSPQYAYVIVPHPMEQGREGKFTLRIFSSAAIRVEPVPETTSIYLRGAWERGSDRDTAGGPLKVVVDESKGARSNPKWCQNPQYWLTLPPELSADDSVDIKIVLRR 927
            +YVC +FP + +  YCV GE    +AGG     ++R    T AQ         ++++SS   +  D D  WFNNPQ+R+T     +           +D ++SSS  +  +     +L      R+PK     I    +   + S H   +    FEV  T +  N P ++ R                                G+E +  G++L  +  Y IVP+  ++G  G F LR+FSS  I +E VP+   I  +G W +  + DT GGP   ++ +    +SNPKWCQNPQY L +      D+ + +K+VLRR
Sbjct:   94 MYVCTLFPHDKYNFYCVKGECRNLSAGGPLHTVRERESVITSAQ----VSRSQSVQKSSAACVL-DGDASWFNNPQFRVTCAKDTTVYISVIPLGNIEDMHNSSSPADLEQASLWVTLC-----RSPKGGNSAILSAGE---ANSYHTHLWEVSQFEVEATDKVENGP-VYVR--------------------------------GQETSIWGVRLDHKMVYHIVPNTSKRGIVGDFILRVFSSRPIALEAVPDLPRIVEKGEWRKVGEVDTTGGP-PFLLQQDGSFKSNPKWCQNPQYHLQIANPFGKDE-IYLKLVLRR 366          
BLAST of mRNA_P-wetherbeei_contig13373.1.1 vs. uniprot
Match: A0A6A4ZLD4_9STRA (calpain_III domain-containing protein (Fragment) n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A6A4ZLD4_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 1.080e-15
Identity = 73/267 (27.34%), Postives = 117/267 (43.82%), Query Frame = 1
Query:  184 IQPDSDPFWFNNPQYRLTTEAPPSDDYNDSSSGPNDGRGGNNTSLSPQRQQRAPKPVEVYISLMQQDRRSASLHARDYHPIGFEVLRTR-RSANHPRLWTRDPEAVVVAS----ARASFAASAMGAGGLGPGAAGAAGREVTKGGLKLSPQYAYVIVPHPMEQGREGKFTLRIFSSAAIRVEPVPETTSIYLRGAWERGSDRDTAGGPL--------KVVVDESKG-----ARSNPKWCQNPQYWLTLPPELSADDSVDIKIVLRRT 930
            ++P+S+P WF NPQYR+                                     +   V ISL+Q+D R   +   D + I F +L+ + RS     +W  D +AVV       A ++   S +    + P       RE++KG + L P +AY+++P+    G E +F LR+FS    +++ +    ++ ++G W        AGGPL            +++ G        N  WCQNPQY L    EL+    +DIK+VL+RT
Sbjct:   23 VEPESEPAWFLNPQYRIVVT----------------------------------EKTSVVISLLQRDFR---VFGGDNYAINFVLLQVKKRSLQASMVWEFDRDAVVTEGHSYVAPSTTTTSVLDKSTVHP------EREISKGNIVLEPDFAYILIPYTDHVGVEMEFFLRVFSPKPCQIDTLRPLHTLVVQGRWRVEEGAVNAGGPLCHNLTTGLSPPCEDTHGIDLVPGMENLTWCQNPQYVLRAAGELTKP--LDIKLVLKRT 244          
BLAST of mRNA_P-wetherbeei_contig13373.1.1 vs. uniprot
Match: A0A7S0SP83_9STRA (Hypothetical protein (Fragment) n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0SP83_9STRA)

HSP 1 Score: 85.5 bits (210), Expect = 4.470e-15
Identity = 74/286 (25.87%), Postives = 118/286 (41.26%), Query Frame = 1
Query:    7 YVCRVFPDENFKQYCVHGEWSGKTAGGAASQQR-RGSATRAQQDGQAVVKDALRRSSLVDIQPDSDPFWFNNPQYRLTTEAPPSDDYNDSSSGPNDGRGGNNTSLSPQRQQRAPKPVEVYISLM--QQDRRSASLHARDYHPIGFEVLRTRRSANHPR-----LWTRDPEAVVVASARASFAASAMGAGGLGPGAAGAAGREVTKGGLKLSPQYAYVIVPHPMEQGREGKFTLRIFSSAAIRVEPVPETTSIYLRGAWERGSDRDTAGGPLKVVVDESKGARSNPK 840
            ++C++FP   +K YC+ GEW  K AGG     R + S   A  + +    D     ++VD     D  WFNNPQ R+                                     K  +++IS +    D+    L       +G +V+   ++ +  R     +W     A ++AS +   +  A              G+E +   L ++  + Y I+PH M++G+EG + LR+FS  +I VE +P      L G W R  D DT GGPL++  +  K  R N K
Sbjct:   95 FLCKLFPTNIYKFYCIKGEWREKQAGGPLIPIRDKNSTITAYNESKKFAFDNASAITIVD----GDSSWFNNPQIRIYCN----------------------------------KATKLFISALPLSGDKDGGGL------ALGVDVIEVNKAVDGSRVNQLHIWDGSL-ANIIASDKVDSSGRAK-------------GQEASIWSLDITAHHYYNIIPHTMKRGQEGFYLLRVFSLDSITVEQMPSLYINTLHGDWHRSHDTDTTGGPLRLTHENGK-QRENSK 321          
BLAST of mRNA_P-wetherbeei_contig13373.1.1 vs. uniprot
Match: A0A2D4C2X3_PYTIN (Calpain catalytic domain-containing protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C2X3_PYTIN)

HSP 1 Score: 73.2 bits (178), Expect = 2.550e-10
Identity = 97/375 (25.87%), Postives = 142/375 (37.87%), Query Frame = 1
Query:    1 QVYVCRVFPDENFK-QYCVHGEWSGKTAGGAASQQRRGSATR----------------AQQD--GQAVVKDALRRSSLVDIQPDSDPFWFNNPQYRLTTEAPPSDDYNDSSSGPNDGRGGNNTSLSPQRQQRAPKPVEVYISLMQQDRRSASLHARDYHPIGFEVLRTRRSANHPRLWTRDPEAVVVASARASFAASA---------------------------------MGAGGLGPGAAGAAGREVTKGGLKLSPQYAYVIVPHPMEQGREGKFTLRIFSSAAIRVEPVPETTSIYLRGAWERGSDRDT-----AGGPLKVVVDESKGARSNPKWCQNPQYWLTLPPE--------LSADDSVDIKIVLRRT 930
            ++YV  VF +++   QY V GEW G +A GA +    G+A R                A+ D  G    +  + R+    ++ D+DP W  NPQ+RL+                                  A +   V +SL Q+D R   L   D + I   VL  ++      LW   P    +A+   SFA  +                                  G+  L P       RE+    + L P++AY +VP       E +F LR+ +   + VE V    +   +G W R  D DT     AGGPL   + +      N  WCQNPQ+WL LPP         L++     IK++LRRT
Sbjct:  690 ELYVVHVFGNDDASYQYNVAGEWLGFSAAGAPTPSLSGAAPRPGTTAVNTXXXXXASNAEDDAVGWRKGERPIERTKWSVLR-DADPNWHRNPQFRLSV---------------------------------AERTRGVLLSLAQRDFR---LFGGDNYAINL-VLVAQKPTRTAMLWEHPPPGPKIAAEAHSFATESHHGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSTMLLP------ERELHVEDVVLEPEHAYFLVPFTDHAKVEMEFFLRVIAPRPVVVERVAPAWTCVQQGKW-RSDDDDTGDATTAGGPL---LSQLHSGDENAAWCQNPQFWLRLPPMGPRRTARLLASKSFATIKVILRRT 1016          
BLAST of mRNA_P-wetherbeei_contig13373.1.1 vs. uniprot
Match: A0A7S2RSH1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RSH1_9STRA)

HSP 1 Score: 53.9 bits (128), Expect = 3.550e-5
Identity = 19/30 (63.33%), Postives = 26/30 (86.67%), Query Frame = 1
Query:    1 QVYVCRVFPDENFKQYCVHGEWSGKTAGGA 90
            ++ +CR+F DE++KQYC+HGEW  KTAGGA
Sbjct:   50 EIVICRIFEDESYKQYCIHGEWKEKTAGGA 79          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig13373.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
D8LK54_ECTSI6.350e-9152.05Calpain catalytic domain-containing protein n=1 Ta... [more]
A0A836CKR5_9STRA1.550e-7846.69Calpain catalytic domain-containing protein n=1 Ta... [more]
A0A7S2D2G9_9STRA1.210e-3631.06Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S1U0F0_9STRA6.410e-3530.50Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A024UDH4_9STRA8.380e-2430.13Calpain catalytic domain-containing protein n=1 Ta... [more]
A0A482RX54_9ARCH1.810e-2028.97Calpain catalytic domain-containing protein (Fragm... [more]
A0A6A4ZLD4_9STRA1.080e-1527.34calpain_III domain-containing protein (Fragment) n... [more]
A0A7S0SP83_9STRA4.470e-1525.87Hypothetical protein (Fragment) n=1 Tax=Chromulina... [more]
A0A2D4C2X3_PYTIN2.550e-1025.87Calpain catalytic domain-containing protein n=1 Ta... [more]
A0A7S2RSH1_9STRA3.550e-563.33Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig13373contigP-wetherbeei_contig13373:116..1712 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LK54
PFAMsCalpain_III,Peptidase_C2
Model size1083
Max annot lvl2759|Eukaryota
KEGG koko:K04740,ko:K08585
Hectar predicted targeting categoryother localisation
Exons5
Evalue1.04e-91
EggNOG OGsKOG0045@1|root,KOG0045@2759|Eukaryota
Ec32 ortholog descriptionPeptidase C2, calpain, large subunit, domain III
Ec32 orthologEc-06_008230.1
Descriptioncalcium-dependent cysteine-type endopeptidase activity
Cds size1083
COG categoryO
BRITEko00000,ko01000,ko01002
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185982.9138577-CDS-P-wetherbeei_contig13373:115..2681683185982.9138577-CDS-P-wetherbeei_contig13373:115..268Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13373 116..268 +
1683185982.9275568-CDS-P-wetherbeei_contig13373:431..8521683185982.9275568-CDS-P-wetherbeei_contig13373:431..852Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13373 432..852 +
1683185982.9347901-CDS-P-wetherbeei_contig13373:942..10251683185982.9347901-CDS-P-wetherbeei_contig13373:942..1025Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13373 943..1025 +
1683185982.9424274-CDS-P-wetherbeei_contig13373:1241..15741683185982.9424274-CDS-P-wetherbeei_contig13373:1241..1574Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13373 1242..1574 +
1683185982.950446-CDS-P-wetherbeei_contig13373:1619..17121683185982.950446-CDS-P-wetherbeei_contig13373:1619..1712Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13373 1620..1712 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig13373.1.1prot_P-wetherbeei_contig13373.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig13373 116..1712 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig13373.1.1

>prot_P-wetherbeei_contig13373.1.1 ID=prot_P-wetherbeei_contig13373.1.1|Name=mRNA_P-wetherbeei_contig13373.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=361bp
QVYVCRVFPDENFKQYCVHGEWSGKTAGGAASQQRRGSATRAQQDGQAVV
KDALRRSSLVDIQPDSDPFWFNNPQYRLTTEAPPSDDYNDSSSGPNDGRG
GNNTSLSPQRQQRAPKPVEVYISLMQQDRRSASLHARDYHPIGFEVLRTR
RSANHPRLWTRDPEAVVVASARASFAASAMGAGGLGPGAAGAAGREVTKG
GLKLSPQYAYVIVPHPMEQGREGKFTLRIFSSAAIRVEPVPETTSIYLRG
AWERGSDRDTAGGPLKVVVDESKGARSNPKWCQNPQYWLTLPPELSADDS
VDIKIVLRRTHGDGGGGGGGTGGGGAGGGVSGDRRRRSSLTHNALLGIVV
CKAQPPPPPAP
back to top

mRNA from alignment at P-wetherbeei_contig13373:116..1712+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig13373.1.1 ID=mRNA_P-wetherbeei_contig13373.1.1|Name=mRNA_P-wetherbeei_contig13373.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1597bp|location=Sequence derived from alignment at P-wetherbeei_contig13373:116..1712+ (Phaeothamnion wetherbeei SAG_119_79)
CAGGTGTATGTGTGCCGCGTGTTTCCGGACGAGAACTTCAAACAATACTG CGTGCACGGGGAGTGGTCGGGCAAGACGGCAGGAGGCGCCGCCTCCCAGC AGCGGCGCGGCTCCGCCACCCGTGCCCAGCAGGACGGGCAGGCCGTCGTC AAGGTGAGGGAGGTGGGCAGCTACCCGCGGGGTTGACTCGAGGAAGAGCC GAGAAGGCAGGGGCAGGGGTTGAAGCGGCTCGCAGCTTTCTTGTATCTGT TCTGGGAAGTTTGTTACACGTCCTCTTTGGCCGCACCTCGTACTGGAAAA AACAATGTTTGAGCAGGACGCGCTGCGGCGGAGTAGCCTGGTGGACATTC AACCCGACAGCGACCCCTTCTGGTTCAACAACCCCCAGTACCGCCTTACC ACGGAGGCCCCCCCCAGCGATGACTACAACGACAGCAGCAGTGGCCCTAA CGACGGCCGCGGCGGCAACAATACTTCGCTCTCACCGCAGCGGCAGCAGC GGGCCCCAAAACCCGTGGAGGTCTACATCAGCCTTATGCAGCAGGACCGC CGCTCCGCCTCGTTGCACGCCCGCGACTACCACCCCATCGGCTTTGAGGT GCTCCGGACGCGGCGGTCAGCCAACCACCCGCGGCTGTGGACGCGGGATC CCGAGGCTGTCGTTGTCGCCAGCGCCCGGGCATCGTTCGCGGCGTCGGCG ATGGGGGCTGGCGGATTGGGGCCCGGAGCGGCAGGCGGTGGCGGCGGCGG CGGCGGCGGTCACCACGGCGTCGGCGGCGGTGGTGGGCACGGTGCCGGCG GCGGCGGCGGCGCTTCGGCGGCGAAAGCGGCCGGGCGGGAGGTGACAAAG GGCGGGCTGAAGCTGAGCCCGCAGTATGCGTACGTGATTGTGCCGCATCC CATGGAACAGGTGAATGTTGTCGTCGACTGCACCAACTAACGGGACCGCC GTCGTTCTACCAGCCGCGGCCACCGTCCGACACGAGGCGTTGTGCTGTTT CAAAGAATACGCTCTCATGTTTCGAAGCATGAATACAGCTGGGAATTCTC TGACACGCGTTGAAGCCCCCCGCTTTCTCTTTTTCAGCTTCGACCTCTCC ACCCTTTGCCTTCTCCGTTTTGGCAGGGACGGGAAGGCAAGTTTACGCTC CGCATCTTCAGCTCCGCCGCCATCCGCGTCGAGCCGGTACCCGAGACTAC CAGCATCTACCTGCGCGGTGCCTGGGAGCGCGGCAGCGACCGCGACACCG CCGGCGGACCGCTGAAGGTCGTCGTTGATGAGTCGAAGGGCGCCCGCAGC AACCCCAAGTGGTGCCAGAACCCGCAGTACTGGCTGACGCTGCCGCCGGA GCTGTCGGCAGATGACTCTGTGGATATCAAGATCGTGCTGCGGCGGACGC ACGGCGATGGCGGCGGCGGCGGGGGTGGGACCGGCGGTGGCGGCGCGGGA GGCGGCGTCGTCGGGAGCGGCGCGGGCGGCGGCGGCGGCGGCGGCACCGG TAAGAGCGGGGACCGGCGGCGGCGGAGCTCGCTGACGCACAACGCGCTGC TGGGCATCGTCGTATGCAAGGCGCAGCCGCCACCGCCGCCTGCGCCG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig13373:116..1712+

>mRNA_P-wetherbeei_contig13373.1.1 ID=mRNA_P-wetherbeei_contig13373.1.1|Name=mRNA_P-wetherbeei_contig13373.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1083bp|location=Sequence derived from alignment at P-wetherbeei_contig13373:116..1712+ (Phaeothamnion wetherbeei SAG_119_79)
CAGGTGTATGTGTGCCGCGTGTTTCCGGACGAGAACTTCAAACAATACTG
CGTGCACGGGGAGTGGTCGGGCAAGACGGCAGGAGGCGCCGCCTCCCAGC
AGCGGCGCGGCTCCGCCACCCGTGCCCAGCAGGACGGGCAGGCCGTCGTC
AAGGACGCGCTGCGGCGGAGTAGCCTGGTGGACATTCAACCCGACAGCGA
CCCCTTCTGGTTCAACAACCCCCAGTACCGCCTTACCACGGAGGCCCCCC
CCAGCGATGACTACAACGACAGCAGCAGTGGCCCTAACGACGGCCGCGGC
GGCAACAATACTTCGCTCTCACCGCAGCGGCAGCAGCGGGCCCCAAAACC
CGTGGAGGTCTACATCAGCCTTATGCAGCAGGACCGCCGCTCCGCCTCGT
TGCACGCCCGCGACTACCACCCCATCGGCTTTGAGGTGCTCCGGACGCGG
CGGTCAGCCAACCACCCGCGGCTGTGGACGCGGGATCCCGAGGCTGTCGT
TGTCGCCAGCGCCCGGGCATCGTTCGCGGCGTCGGCGATGGGGGCTGGCG
GATTGGGGCCCGGAGCGGCAGGCGCGGCCGGGCGGGAGGTGACAAAGGGC
GGGCTGAAGCTGAGCCCGCAGTATGCGTACGTGATTGTGCCGCATCCCAT
GGAACAGGGACGGGAAGGCAAGTTTACGCTCCGCATCTTCAGCTCCGCCG
CCATCCGCGTCGAGCCGGTACCCGAGACTACCAGCATCTACCTGCGCGGT
GCCTGGGAGCGCGGCAGCGACCGCGACACCGCCGGCGGACCGCTGAAGGT
CGTCGTTGATGAGTCGAAGGGCGCCCGCAGCAACCCCAAGTGGTGCCAGA
ACCCGCAGTACTGGCTGACGCTGCCGCCGGAGCTGTCGGCAGATGACTCT
GTGGATATCAAGATCGTGCTGCGGCGGACGCACGGCGATGGCGGCGGCGG
CGGGGGTGGGACCGGCGGTGGCGGCGCGGGAGGCGGCGTCAGCGGGGACC
GGCGGCGGCGGAGCTCGCTGACGCACAACGCGCTGCTGGGCATCGTCGTA
TGCAAGGCGCAGCCGCCACCGCCGCCTGCGCCG
back to top