mRNA_P-wetherbeei_contig13323.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig13323.1.1
Unique NamemRNA_P-wetherbeei_contig13323.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig13323.1.1 vs. uniprot
Match: A0A836C9F9_9STRA (Magnesium transporter n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9F9_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 1.060e-7
Identity = 27/51 (52.94%), Postives = 40/51 (78.43%), Query Frame = 1 
Query:    1 LALTQQEVSRLTEDVMATQELASINLDLLRNRILRVEMQLGMVGLGVAASA 153
            L++TQ E+S+L ++V +TQELA INLD+ RNR+L +E+QL M+ + VA  A
Sbjct:  305 LSITQNEISKLVQEVQSTQELAGINLDISRNRMLHMEIQLAMMNVSVACCA 355
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig13323.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A836C9F9_9STRA1.060e-752.94Magnesium transporter n=1 Tax=Tribonema minus TaxI... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig13323contigP-wetherbeei_contig13323:394..552 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size159
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Cds size159
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185981.3099425-CDS-P-wetherbeei_contig13323:393..5521683185981.3099425-CDS-P-wetherbeei_contig13323:393..552Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13323 394..552 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig13323.1.1prot_P-wetherbeei_contig13323.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig13323 394..552 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig13323.1.1

>prot_P-wetherbeei_contig13323.1.1 ID=prot_P-wetherbeei_contig13323.1.1|Name=mRNA_P-wetherbeei_contig13323.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=53bp
LALTQQEVSRLTEDVMATQELASINLDLLRNRILRVEMQLGMVGLGVAAS
AR*
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mRNA from alignment at P-wetherbeei_contig13323:394..552-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig13323.1.1 ID=mRNA_P-wetherbeei_contig13323.1.1|Name=mRNA_P-wetherbeei_contig13323.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=159bp|location=Sequence derived from alignment at P-wetherbeei_contig13323:394..552- (Phaeothamnion wetherbeei SAG_119_79)
CTGGCGCTGACGCAGCAGGAGGTATCGCGGCTGACGGAGGACGTCATGGC
CACGCAGGAGCTCGCCTCCATCAACCTCGACCTGCTTCGGAATCGCATCC
TCCGTGTAGAGATGCAGCTCGGCATGGTAGGGCTCGGAGTCGCCGCCAGC
GCCAGGTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig13323:394..552-

>mRNA_P-wetherbeei_contig13323.1.1 ID=mRNA_P-wetherbeei_contig13323.1.1|Name=mRNA_P-wetherbeei_contig13323.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=159bp|location=Sequence derived from alignment at P-wetherbeei_contig13323:394..552- (Phaeothamnion wetherbeei SAG_119_79)
CTGGCGCTGACGCAGCAGGAGGTATCGCGGCTGACGGAGGACGTCATGGC
CACGCAGGAGCTCGCCTCCATCAACCTCGACCTGCTTCGGAATCGCATCC
TCCGTGTAGAGATGCAGCTCGGCATGGTAGGGCTCGGAGTCGCCGCCAGC
GCCAGGTGA
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