mRNA_P-wetherbeei_contig13319.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig13319.1.1
Unique NamemRNA_P-wetherbeei_contig13319.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig13319.1.1 vs. uniprot
Match: A0A6H5LMQ8_9PHAE (C2 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5LMQ8_9PHAE)

HSP 1 Score: 127 bits (320), Expect = 9.260e-32
Identity = 65/103 (63.11%), Postives = 78/103 (75.73%), Query Frame = 1
Query:    1 TDGVINDEAAATEAIVAAAVLPFSVIIIGVGRADFAAMERLDGDAVRLTNAAGRPASRDIVQFVPMRDFLDKGPHAVAREVLAEVPGQILLYMKQNGVAPGRP 309
            TDGVI D     EAIVAAA  PFS++I+GVG AD+ +ME+LDGD VRL N AG+ A RDIVQFVPMRDF  K  HA+A+EVLAE+P Q++ YMK N + PG P
Sbjct:  462 TDGVICDMENTVEAIVAAADYPFSMVIVGVGDADYTSMEQLDGDDVRLVNRAGQRAGRDIVQFVPMRDFAGKSSHALAKEVLAEIPAQVIEYMKNNHIPPGNP 564          
BLAST of mRNA_P-wetherbeei_contig13319.1.1 vs. uniprot
Match: D7G7Q5_ECTSI (C2 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7Q5_ECTSI)

HSP 1 Score: 127 bits (318), Expect = 1.340e-31
Identity = 65/98 (66.33%), Postives = 79/98 (80.61%), Query Frame = 1
Query:    1 TDGVINDEAAATEAIVAAAVLPFSVIIIGVGRADFAAMERLDGDAVRLTNAAGRPASRDIVQFVPMRDFLDKGPHAVAREVLAEVPGQILLYMKQNGV 294
            TDGVIND     +A+VAAA LPFSVII+GVGRADF+ ME+LDGD +R+ NA GR ASRDIVQFVPMR+F + G HA+AREVLAE+P Q++ YM  N +
Sbjct:  461 TDGVINDMGNTMDALVAAADLPFSVIIVGVGRADFSLMEQLDGDDIRIANAQGRKASRDIVQFVPMREFSNLGFHALAREVLAEIPQQVVEYMANNRI 558          
BLAST of mRNA_P-wetherbeei_contig13319.1.1 vs. uniprot
Match: A0A6H5L3T5_9PHAE (C2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3T5_9PHAE)

HSP 1 Score: 125 bits (313), Expect = 8.620e-31
Identity = 62/103 (60.19%), Postives = 77/103 (74.76%), Query Frame = 1
Query:    1 TDGVINDEAAATEAIVAAAVLPFSVIIIGVGRADFAAMERLDGDAVRLTNAAGRPASRDIVQFVPMRDFLDKGPHAVAREVLAEVPGQILLYMKQNGVAPGRP 309
            TDG I D     EAIVA++  PFSV+I+GVG AD+ +M+RLDGD VRL N AG+ A RDIVQFVPMRDF  K  HA+A+EVLAE+P Q++ YM+ N + PG P
Sbjct:  467 TDGAIMDVENTVEAIVASSDYPFSVVIVGVGEADYTSMKRLDGDDVRLVNKAGKRAGRDIVQFVPMRDFAGKSSHALAKEVLAEIPAQVIEYMENNQIPPGNP 569          
BLAST of mRNA_P-wetherbeei_contig13319.1.1 vs. uniprot
Match: A0A7S2Y008_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y008_9STRA)

HSP 1 Score: 114 bits (286), Expect = 1.420e-30
Identity = 59/101 (58.42%), Postives = 74/101 (73.27%), Query Frame = 1
Query:    1 TDGVINDEAAATEAIVAAAVLPFSVIIIGVGRADFAAMERLDGDAVRLTNAAGRPASRDIVQFVPMRDFLDKGPHAVAREVLAEVPGQILLYMKQNGVAPG 303
            TDG+IND     +AIVAA+ L  S+IIIGVG ADF  ME LDGD VRL ++AG     DIVQFVP  +F D+GP A+A+EVL EVP Q++ YM++NG+ PG
Sbjct:    6 TDGIINDMQNTIDAIVAASSLALSIIIIGVGEADFTNMEVLDGDDVRLRSSAGAECVSDIVQFVPWNEFKDRGPQALAKEVLEEVPRQVMHYMERNGITPG 106          
BLAST of mRNA_P-wetherbeei_contig13319.1.1 vs. uniprot
Match: C3ZVJ4_BRAFL (Copine domain-containing protein n=1 Tax=Branchiostoma floridae TaxID=7739 RepID=C3ZVJ4_BRAFL)

HSP 1 Score: 115 bits (289), Expect = 1.510e-29
Identity = 68/118 (57.63%), Postives = 81/118 (68.64%), Query Frame = 1
Query:    1 TDGVINDEAAATEAIVAAAVLPFSVIIIGVGRADFAAMERLDGDAVRLTNAAGRPASRDIVQFVPMRDFLDKGPHAV------AREVLAEVPGQILLYMKQNGVAPGRPVPASVTVAG 336
            TDGVI D     EAIV AA LP S+II+GVG  DF AME LDGD VRL+   GR A RDIVQFVP RD++D+  + V      A++VLAEVP Q+L YMK++G+ PG P PA V  AG
Sbjct:  106 TDGVITDFEQTKEAIVNAATLPLSIIIVGVGNDDFEAMEILDGDEVRLSYR-GRQAERDIVQFVPFRDYVDRQGNQVLSQARLAKDVLAEVPDQLLSYMKKHGIKPGAPPPAYVAPAG 222          
BLAST of mRNA_P-wetherbeei_contig13319.1.1 vs. uniprot
Match: A0A835Z8P5_9STRA (Copine-8 (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8P5_9STRA)

HSP 1 Score: 114 bits (284), Expect = 1.760e-29
Identity = 58/86 (67.44%), Postives = 72/86 (83.72%), Query Frame = 1
Query:    1 TDGVINDEAAATEAIVAAAVLPFSVIIIGVGRADFAAMERLDGDAVRLTNAAGRPASRDIVQFVPMRDFLDKGPHAVAREVLAEVP 258
            TDG+IND A  T+AIVAAA LPFS+II+GVG ADFA+M  LDGD VRLT+++G+ A RDIVQFVPMR+   KGP A+A+EVL+E+P
Sbjct:   89 TDGIINDMANTTDAIVAAAELPFSIIIVGVGNADFASMVELDGDDVRLTSSSGKKAVRDIVQFVPMREVSAKGPQALAKEVLSEIP 174          
BLAST of mRNA_P-wetherbeei_contig13319.1.1 vs. uniprot
Match: UPI00189CBED0 (copine-9-like n=1 Tax=Sebastes umbrosus TaxID=72105 RepID=UPI00189CBED0)

HSP 1 Score: 108 bits (270), Expect = 8.230e-28
Identity = 61/113 (53.98%), Postives = 80/113 (70.80%), Query Frame = 1
Query:    1 TDGVINDEAAATEAIVAAAVLPFSVIIIGVGRADFAAMERLDGDAVRLTNAAGRPASRDIVQFVPMRDFLDKGPHAV------AREVLAEVPGQILLYMKQNGVAPGRPVPAS 321
            TDGVI+D A   EA+V AA LP S II+GVG A+F AME LDGD VR+++  GR A RDIVQFVP RD++D+  + V      A++VLAE+P Q+L +MK  G+ P  P+PA+
Sbjct:    3 TDGVISDMAQTKEAVVNAASLPMSTIIVGVGPAEFDAMEELDGDEVRVSSR-GRFAERDIVQFVPFRDYIDRSGNQVLSMARLAKDVLAEIPDQLLSFMKSRGIDPRPPLPAT 114          
BLAST of mRNA_P-wetherbeei_contig13319.1.1 vs. uniprot
Match: A0A2B4SHL0_STYPI (Copine-8 n=2 Tax=Stylophora pistillata TaxID=50429 RepID=A0A2B4SHL0_STYPI)

HSP 1 Score: 116 bits (290), Expect = 1.050e-27
Identity = 66/111 (59.46%), Postives = 80/111 (72.07%), Query Frame = 1
Query:    1 TDGVINDEAAATEAIVAAAVLPFSVIIIGVGRADFAAMERLDGDAVRLTNAAGRPASRDIVQFVPMRDFLDKG---PHAVAREVLAEVPGQILLYMKQNGVAPGRPVPASV 324
            TDG+I+D A   EAIV AA LP S+II+GVG A+F AME LDGD VRL++  GR A RDIVQFVP RDF  +G   P  +++EVLAEVP Q+L YMK+N + P  P P SV
Sbjct:  447 TDGIISDMAQTKEAIVNAASLPISIIIVGVGAAEFDAMEELDGDTVRLSSR-GRSAERDIVQFVPFRDFQTRGILAPDLLSKEVLAEVPDQLLSYMKKNTIKPKPPQPISV 556          
BLAST of mRNA_P-wetherbeei_contig13319.1.1 vs. uniprot
Match: A0A3P4S7K5_GULGU (Copine domain-containing protein (Fragment) n=1 Tax=Gulo gulo TaxID=48420 RepID=A0A3P4S7K5_GULGU)

HSP 1 Score: 107 bits (266), Expect = 6.970e-27
Identity = 58/107 (54.21%), Postives = 72/107 (67.29%), Query Frame = 1
Query:    1 TDGVINDEAAATEAIVAAAVLPFSVIIIGVGRADFAAMERLDGDAVRLTNAAGRPASRDIVQFVPMRDFLDKGPHAVAREVLAEVPGQILLYMKQNGVAPGRPVPAS 321
            TDGV++D A    AIV A+ LP S+II+GVG ADF+ M  LDGD   L    G PA+RDIVQFVP RDF D  P A+A+ VLAEVP Q++ Y    G++PG P P +
Sbjct:   51 TDGVVSDMAETRAAIVRASRLPMSIIIVGVGNADFSDMRLLDGDDGPLRCPRGVPAARDIVQFVPFRDFKDAAPSALAKCVLAEVPRQVVEYYASQGISPGAPRPCT 157          
BLAST of mRNA_P-wetherbeei_contig13319.1.1 vs. uniprot
Match: UPI0011EA02FB (copine-9-like n=2 Tax=Percomorphaceae TaxID=1489872 RepID=UPI0011EA02FB)

HSP 1 Score: 108 bits (270), Expect = 1.250e-26
Identity = 60/113 (53.10%), Postives = 80/113 (70.80%), Query Frame = 1
Query:    1 TDGVINDEAAATEAIVAAAVLPFSVIIIGVGRADFAAMERLDGDAVRLTNAAGRPASRDIVQFVPMRDFLDKGPHAV------AREVLAEVPGQILLYMKQNGVAPGRPVPAS 321
            TDGVI+D A   EA+V AA LP S+II+GVG A+F AME LDGD VR+++  GR A RDIVQFVP RD++D+  + V      A++VLAE+P Q+L +MK  G+ P  P+P +
Sbjct:  111 TDGVISDMAQTKEAVVNAASLPMSIIIVGVGPAEFDAMEELDGDEVRVSSR-GRFAERDIVQFVPFRDYIDRSGNQVLSMARLAKDVLAEIPDQLLSFMKSRGIEPRPPLPVT 222          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig13319.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5LMQ8_9PHAE9.260e-3263.11C2 domain-containing protein n=2 Tax=Ectocarpus Ta... [more]
D7G7Q5_ECTSI1.340e-3166.33C2 domain-containing protein n=2 Tax=Ectocarpus Ta... [more]
A0A6H5L3T5_9PHAE8.620e-3160.19C2 domain-containing protein n=1 Tax=Ectocarpus sp... [more]
A0A7S2Y008_9STRA1.420e-3058.42Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
C3ZVJ4_BRAFL1.510e-2957.63Copine domain-containing protein n=1 Tax=Branchios... [more]
A0A835Z8P5_9STRA1.760e-2967.44Copine-8 (Fragment) n=1 Tax=Tribonema minus TaxID=... [more]
UPI00189CBED08.230e-2853.98copine-9-like n=1 Tax=Sebastes umbrosus TaxID=7210... [more]
A0A2B4SHL0_STYPI1.050e-2759.46Copine-8 n=2 Tax=Stylophora pistillata TaxID=50429... [more]
A0A3P4S7K5_GULGU6.970e-2754.21Copine domain-containing protein (Fragment) n=1 Ta... [more]
UPI0011EA02FB1.250e-2653.10copine-9-like n=2 Tax=Percomorphaceae TaxID=148987... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig13319contigP-wetherbeei_contig13319:1061..1857 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FXN0
PFAMsC2,Copine,Dev_Cell_Death
Model size387
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
GOsGO:0001101,GO:0003674,GO:0005488,GO:0005543,GO:0005544,GO:0005575,GO:0005623,GO:0005886,GO:0005911,GO:0008150,GO:0008289,GO:0008361,GO:0009266,GO:0009270,GO:0009415,GO:0009506,GO:0009628,GO:0009987,GO:0010035,GO:0010118,GO:0010941,GO:0016020,GO:0016043,GO:0030054,GO:0032535,GO:0042221,GO:0043167,GO:0043168,GO:0044464,GO:0045793,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0055044,GO:0060548,GO:0065007,GO:0065008,GO:0071840,GO:0071944,GO:0090066,GO:0090332,GO:1901700
Exons2
Evalue2.6e-32
EggNOG OGsKOG1327@1|root,KOG1327@2759|Eukaryota
Descriptionnegative regulation of response to water deprivation
Cds size387
COG categoryU
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185981.1755857-CDS-P-wetherbeei_contig13319:1060..13601683185981.1755857-CDS-P-wetherbeei_contig13319:1060..1360Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13319 1061..1360 -
1683185981.1840277-CDS-P-wetherbeei_contig13319:1770..18571683185981.1840277-CDS-P-wetherbeei_contig13319:1770..1857Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13319 1771..1857 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig13319.1.1prot_P-wetherbeei_contig13319.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig13319 1061..1857 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig13319.1.1

>prot_P-wetherbeei_contig13319.1.1 ID=prot_P-wetherbeei_contig13319.1.1|Name=mRNA_P-wetherbeei_contig13319.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=129bp
TDGVINDEAAATEAIVAAAVLPFSVIIIGVGRADFAAMERLDGDAVRLTN
AAGRPASRDIVQFVPMRDFLDKGPHAVAREVLAEVPGQILLYMKQNGVAP
GRPVPASVTVAGGGHGGGGMGGATAPPPP
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mRNA from alignment at P-wetherbeei_contig13319:1061..1857-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig13319.1.1 ID=mRNA_P-wetherbeei_contig13319.1.1|Name=mRNA_P-wetherbeei_contig13319.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=797bp|location=Sequence derived from alignment at P-wetherbeei_contig13319:1061..1857- (Phaeothamnion wetherbeei SAG_119_79)
ACGGACGGCGTGATAAACGACGAGGCGGCCGCCACGGAGGCAATAGTTGC TGCGGCGGTCCTTCCCTTTTCCGTCATAATCATCGGGGTGAGCAAATTTG AGAAAGCCGATTGTGCGTGAGGGTTCAGGGTAGGGACTGTGCTAGGTCCG TTGCCATGTTCGAAAAGGAAAGAAGAGGAATGGTGGTGGCGGCAGCCACG CTCGTTATTATGGACAGGCTCTGTAGGTTCTGAGACACTTTATCTGGCTT GCTCTGTGCTCTGTCTTCGGGTTTGGGTGCAATTGTACTCGATTCAAAGC CAGGTCCCTCTGAACAGCTTCTATCTCTTGAAAGTTAAAGACGCCGCAAT CGCAGTATCATTGCCATGTACTTACATGCGCTCCCGTGGGGGAGAAGAGA GGGAGCATTAGAAGACACATGTTTACTGTATCTTTGCGTGTGCACGCCTT CTCTCCCACGGTGGTGTATCTCTGCCGCCTCTCTGGATTTACCGCAGGTG GGCAGGGCTGATTTCGCAGCGATGGAGCGCCTCGACGGCGACGCCGTCCG CCTGACGAACGCCGCCGGCCGGCCGGCTTCCCGTGACATTGTCCAGTTCG TGCCCATGCGCGACTTTTTGGACAAGGGTCCCCACGCCGTCGCCCGCGAA GTTTTGGCCGAAGTTCCGGGCCAGATTTTGCTCTACATGAAGCAGAACGG CGTGGCGCCGGGCCGCCCGGTGCCGGCCAGCGTGACAGTGGCCGGCGGCG GCCACGGCGGTGGCGGCATGGGCGGAGCGACGGCGCCGCCGCCGCCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig13319:1061..1857-

>mRNA_P-wetherbeei_contig13319.1.1 ID=mRNA_P-wetherbeei_contig13319.1.1|Name=mRNA_P-wetherbeei_contig13319.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=387bp|location=Sequence derived from alignment at P-wetherbeei_contig13319:1061..1857- (Phaeothamnion wetherbeei SAG_119_79)
ACGGACGGCGTGATAAACGACGAGGCGGCCGCCACGGAGGCAATAGTTGC
TGCGGCGGTCCTTCCCTTTTCCGTCATAATCATCGGGGTGGGCAGGGCTG
ATTTCGCAGCGATGGAGCGCCTCGACGGCGACGCCGTCCGCCTGACGAAC
GCCGCCGGCCGGCCGGCTTCCCGTGACATTGTCCAGTTCGTGCCCATGCG
CGACTTTTTGGACAAGGGTCCCCACGCCGTCGCCCGCGAAGTTTTGGCCG
AAGTTCCGGGCCAGATTTTGCTCTACATGAAGCAGAACGGCGTGGCGCCG
GGCCGCCCGGTGCCGGCCAGCGTGACAGTGGCCGGCGGCGGCCACGGCGG
TGGCGGCATGGGCGGAGCGACGGCGCCGCCGCCGCCG
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