mRNA_P-wetherbeei_contig13307.1.2 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig13307.1.2
Unique NamemRNA_P-wetherbeei_contig13307.1.2
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig13307.1.2 vs. uniprot
Match: A0A7S2UWP2_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UWP2_9STRA)

HSP 1 Score: 249 bits (636), Expect = 6.360e-77
Identity = 135/271 (49.82%), Postives = 165/271 (60.89%), Query Frame = 1
Query:   10 PAIAYGIMVYVRPGHDLEAVFRQFNRMFSALYDARNTYVVHVDIKSDKRLQELIEERFKDLPNAFLIESASASWAGITVVERTLALMQAALEADGDGGXXXXXXXXXXKDCGNGDHSXXXXXXXXXGWRYFVNIGHEDYPLVPQAAASARLAAFPDGTNFIKCWNIEGHDFFGQWEHHKTRVHAVYVDDFTGTTHDTRFRRPSMSDPSRSPYKFFKSLQQTVLSRNFVRHAVRSAAARRLLVYMATAQAPDELFFPTLLQLDPKFAA--TC 816
            P+IAYGIMVY R G++++ V++QF R+F ALY  +N Y +HVDIKSDK L + I    K L N   I S S SWAGITVVERTLA MQ ALE++ D                               W+YFVN+GHEDYPL  Q   S  L  +  GTNFIKCW +EGH+FFGQWEHH+ RV  +  D FTG  HD   RR  M        KF+KSLQQTVLSR F  ++  +  ARR+L+Y+A ++APDELFFPT LQ +   AA  TC
Sbjct:   70 PSIAYGIMVYQREGYEVDWVYKQFERLFWALYHPQNFYAIHVDIKSDKELHQRISLLLKGLENVKEIYSVSISWAGITVVERTLAQMQTALESNED-------------------------------WQYFVNLGHEDYPLATQNDMSRLLGEYAPGTNFIKCWPVEGHNFFGQWEHHEKRVEELTFDTFTGEAHDVHIRREHMPTLG---MKFYKSLQQTVLSREFCEYSCYALEARRILLYLANSKAPDELFFPTALQTNADMAAKATC 306          
BLAST of mRNA_P-wetherbeei_contig13307.1.2 vs. uniprot
Match: A0A6T5PXW9_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6T5PXW9_HETAK)

HSP 1 Score: 241 bits (614), Expect = 1.290e-73
Identity = 137/275 (49.82%), Postives = 162/275 (58.91%), Query Frame = 1
Query:   10 PAIAYGIMVYVRPGHDLEAVFRQFNRMFSALYDARNTYVVHVDIKSDKRLQELIEERFKDLPNAFLIESASASWAGITVVERTLALMQAALEADGDGGXXXXXXXXXXKDCGNGDHSXXXXXXXXXGWRYFVNIGHEDYPLVPQAAASARLAAFPDGT----NFIKCWNIEGHDFFGQWEHHKTRVHAVYVDDFTGTTHDTRFRRPSMSDPSRSPYKFFKSLQQTVLSRNFVRHAVRSAAARRLLVYMATAQAPDELFFPTLLQLDPKFA--ATC 816
            P IAYGIMVY R G  ++AV RQF R+F ALY   NTYV+HVD+KSD  L E ++       N   +   S SWAGITVVERTLALMQ ALE D                                 W YFVNIGHEDYP + Q   SA L      T    NFIKCW+I GHDFFGQWEHH+ RV  V +D+F G T DT + RP   D  R   KF+KSLQQT L R+FV +AV    +RR+L++MA ++APDE+FFPT+LQ  P  A  ATC
Sbjct:   49 PKIAYGIMVYQRQGRTVDAVLRQFERLFEALYHPENTYVIHVDVKSDPHLIEEMDRYLDFFENTHQLHPVSVSWAGITVVERTLALMQVALEQDPT-------------------------------WGYFVNIGHEDYPAMGQGQMSAWLGRHEVETGGPVNFIKCWDILGHDFFGQWEHHERRVEVVTIDNFVGGTEDTSYTRPR--DDLRG-IKFYKSLQQTTLHRDFVDYAVYGIESRRILLFMANSKAPDEIFFPTVLQTRPDLAETATC 289          
BLAST of mRNA_P-wetherbeei_contig13307.1.2 vs. uniprot
Match: A0A4D9D7W1_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D7W1_9STRA)

HSP 1 Score: 228 bits (581), Expect = 5.040e-68
Identity = 139/279 (49.82%), Postives = 163/279 (58.42%), Query Frame = 1
Query:    1 PTTPAIAYGIMVYVRPGHDLEAVFRQFNRMFSALYDARNTYVVHVDIKSDKRLQELIEERFKD-LPNAFLIESASASWAGITVVERTLALMQAALEADGDGGXXXXXXXXXXKDCGNGDHSXXXXXXXXXGWRYFVNIGHEDYPLVPQAAASARLA-AFPDGTNFIKCWNIEGHDFFGQWEHHKTRVHAVYVDDFTGTTHDTR-FRRPSMSDPSRSPYKFFKSLQQTVLSRNFVRHAVRSAAARRLLVYMATAQAPDELFFPTLLQLDPKFA----ATC 816
            P+   +AYG+MVY R    +  VF QF R+F A+Y    T VVHVDIKS+  L E I +  K   P A  I S S SW GITVVERTLALMQAALE+D +                               W YFVNIG EDYPL   AA    LA A P  TNFI CW++ GHDFFGQWEHH+ RV  V+VD F G + + R F R   S P    Y F+KSLQQTVLSR FV  AV +  +RRLL+Y+AT++APDE+FFPTLL L    A    ATC
Sbjct:   69 PSPGKVAYGVMVYQRQNKTVSDVFDQFTRLFDAIYSPNFTCVVHVDIKSEPALIEKITDYVKKHAPQASTIPSVSVSWGGITVVERTLALMQAALESDPE-------------------------------WEYFVNIGQEDYPLQSPAAIQEYLAHAVPPATNFIYCWDLRGHDFFGQWEHHEGRVSKVFVDMFDGRSREVRGFPR---SPPKE--YTFYKSLQQTVLSRVFVESAVHAPESRRLLLYLATSEAPDEIFFPTLLHLPSNRAHAARATC 311          
BLAST of mRNA_P-wetherbeei_contig13307.1.2 vs. uniprot
Match: A0A835YXC2_9STRA (Core-2/I-branching enzyme-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXC2_9STRA)

HSP 1 Score: 221 bits (562), Expect = 6.010e-66
Identity = 123/266 (46.24%), Postives = 151/266 (56.77%), Query Frame = 1
Query:   16 IAYGIMVYVRPGHDLEAVFRQFNRMFSALYDARNTYVVHVDIKSDKRLQELIEERFKDLPNAFLIESASASWAGITVVERTLALMQAALEADGDGGXXXXXXXXXXKDCGNGDHSXXXXXXXXXGWRYFVNIGHEDYPLVPQAAASARLAAFPDGTNFIKCWNIEGHDFFGQWEHHKTRVHAVYVDDFTGTTHDTRFRRPSMSDPSRSPYKFFKSLQQTVLSRNFVRHAVRSAAARRLLVYMATAQAPDELFFPTLLQLDPKFAAT 813
            +A+GIMVY R G   E+   QF R+   LYD  NTY +HVD KSD  L   I    + LPNA ++ES S +W GI+VVERTLAL QAALE D                                 W YFVNIGHEDYP          L A P G N++KCW++  HDFFGQ E H  +   V VDDF G  H T F +P+ S  +   ++F+KSLQQ V+SR+F RHAV SA ARRLL+  A+  APDE+FFPTLLQ    + +T
Sbjct:   38 VAFGIMVYQRQGVSAESALMQFQRLLRTLYDPVNTYAIHVDSKSDPTLIAGINRILQRLPNAVMLESTSVAWGGISVVERTLALAQAALELD-------------------------------QRWSYFVNIGHEDYPNASPREIRKALTAMPAGRNYMKCWHLAEHDFFGQIERHGPKARKVVVDDFAGMVHPTGFSKPADSMRALG-FQFYKSLQQMVISRDFCRHAVYSADARRLLLVTASLLAPDEVFFPTLLQQSDSYRST 271          
BLAST of mRNA_P-wetherbeei_contig13307.1.2 vs. uniprot
Match: D8LSR7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSR7_ECTSI)

HSP 1 Score: 188 bits (477), Expect = 2.220e-53
Identity = 113/273 (41.39%), Postives = 134/273 (49.08%), Query Frame = 1
Query:   10 PAIAYGIMVYVRPGHDLEAVFRQFNRMFSALYDARNTYVVHVDIKSDKRLQELIEERFKDLPNAFLIESASASWAGITVVERTLALMQAALEADGDGGXXXXXXXXXXKDCGNGDHSXXXXXXXXXGWRYFVNIGHEDYPLVPQAAASARLAAFPDGTNFIKCWNIEGHDFFGQWEHHKTRVHAVYVDDFTGTTHDTRFRRPSMSDPSR--SPYKFFKSLQQTVLSRNFVRHAVRSAAARRLLVYMATAQAPDELFFPTLLQLDPKFA--ATC 816
            P +AYGIMVY R G+  +    QF RM  ALYD  NTYV+HVDIKSDK L + I    KDLPN +                                                                       EDYP   QA     L    DGTNFIKCW IEGHDFFGQ E H+ RV  V VDDF G   + R    +     R  + YKFFKSLQQT+LSR    +A+ S+ ARRLL+YMAT++APDEL+FPTL QLD +++  ATC
Sbjct:   64 PRLAYGIMVYQRKGYSPQTTLDQFGRMLKALYDEENTYVIHVDIKSDKALLDAISHHIKDLPNVY----------------------------------------------------------------------EEDYPSASQAEMRRWLKDQKDGTNFIKCWPIEGHDFFGQMERHEQRVQDVNVDDFMGGVKEYRTMSGNTGSQERPKTDYKFFKSLQQTMLSRQLTEYAIHSSEARRLLLYMATSKAPDELYFPTLTQLDERYSSMATC 266          
BLAST of mRNA_P-wetherbeei_contig13307.1.2 vs. uniprot
Match: W7UCA6_9STRA (Core-2 i-branching enzyme n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7UCA6_9STRA)

HSP 1 Score: 169 bits (429), Expect = 7.580e-47
Identity = 97/203 (47.78%), Postives = 113/203 (55.67%), Query Frame = 1
Query:    1 PTTPAIAYGIMVYVRPGHDLEAVFRQFNRMFSALYDARNTYVVHVDIKSDKRLQELIEERFKD-LPNAFLIESASASWAGITVVERTLALMQAALEADGDGGXXXXXXXXXXKDCGNGDHSXXXXXXXXXGWRYFVNIGHEDYPLVPQAAASARLA-AFPDGTNFIKCWNIEGHDFFGQWEHHKTRVHAVYVDDFTGTTHDTR 603
            P+   +AYG+MVY R    +  VF QF R+F A+Y    T VVHVDIKS+  L E I +  K   P A  I S S SW GITVVERTLALMQAALE+D +                               W YFVNIG EDYPL   AA    LA A P  TNFI CW++ GHDFFGQWEHH+ RV  V+VD F G + + R
Sbjct:   69 PSPGKVAYGVMVYQRQNKTVSDVFDQFTRLFDAIYSPNFTCVVHVDIKSEPALIEKITDYVKKHAPQASTIPSVSVSWGGITVVERTLALMQAALESDPE-------------------------------WEYFVNIGQEDYPLQSPAAIQEYLAHAVPPATNFIYCWDLRGHDFFGQWEHHEGRVSKVFVDMFDGRSREVR 240          
BLAST of mRNA_P-wetherbeei_contig13307.1.2 vs. uniprot
Match: A0A7S1U3N2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U3N2_9STRA)

HSP 1 Score: 142 bits (359), Expect = 1.170e-38
Identity = 84/205 (40.98%), Postives = 103/205 (50.24%), Query Frame = 1
Query:   58 LEAVFRQFNRMFSALYDARNTYVVHVDIKSDKRLQELIEERFKDLPNAFLIESASASWAGITVVERTLALMQAALEADGDGGXXXXXXXXXXKDCGNGDHSXXXXXXXXXGWRYFVNIGHEDYPLVPQAAASARLAAFPDGTNFIKCWNIEGHDFFGQWEHHKTRVHAVYVDDFTGTTHD-TRFRRPSMSDPSRSPYKFFKSLQQ 669
            L  V  QF+R FSA+    + Y +HVD KS       +   +    N  ++ES S SWAG+TVVERTLAL Q  LEA G                                W +FVN+GHEDYP+V      A L A P  TNFIKCW I  H+FFGQ E H  RV  ++VDDF G  HD T   RP   +     +KF+K+LQQ
Sbjct:   12 LSDVELQFHRSFSAVLSDDHFYALHVDRKSSSAFLAAVRRNYSAAANVEILESVSVSWAGVTVVERTLALAQTCLEAFGH-------------------------------WDFFVNLGHEDYPVVGMEEMQAWLGAHPRETNFIKCWPIGRHNFFGQVESHGHRVRQIHVDDFAGDVHDITDVERPKFKE-----FKFYKALQQ 180          
BLAST of mRNA_P-wetherbeei_contig13307.1.2 vs. uniprot
Match: A0A6H5JPB4_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPB4_9PHAE)

HSP 1 Score: 144 bits (363), Expect = 1.030e-37
Identity = 76/143 (53.15%), Postives = 93/143 (65.03%), Query Frame = 1
Query:  400 FVNIGHEDYPLVPQAAASARLAAFPDGTNFIKCWNIEGHDFFGQWEHHKTRVHAVYVDDFTGTTHDTRF--RRPSMSDPSRSPYKFFKSLQQTVLSRNFVRHAVRSAAARRLLVYMATAQAPDELFFPTLLQLDPKFA--ATC 816
            F     EDYP   QA     L    DGTNFIKCW IEGHDFFGQ E H+ RV  V VDDF G   + R    +    +  ++ YKFFKSLQQT+LSR    +A+ S+ ARRLL+YMAT++APDEL+FPTL QLD +++  ATC
Sbjct:    9 FCRCRQEDYPSASQAEMRRWLKDQKDGTNFIKCWPIEGHDFFGQMERHEQRVQDVNVDDFMGGVKEYRTVSGKTGSQERPKTDYKFFKSLQQTMLSRQLTEYAIHSSEARRLLLYMATSKAPDELYFPTLTQLDERYSSMATC 151          
BLAST of mRNA_P-wetherbeei_contig13307.1.2 vs. uniprot
Match: A0A1L3ZQA3_RHILE (Glycosyl transferase n=1 Tax=Rhizobium leguminosarum TaxID=384 RepID=A0A1L3ZQA3_RHILE)

HSP 1 Score: 74.3 bits (181), Expect = 8.150e-12
Identity = 49/154 (31.82%), Postives = 70/154 (45.45%), Query Frame = 1
Query:   16 IAYGIMVYVRPGHDLEAVFRQFNRMFSALYDARNTYVVHVDIKSDKRLQELIEERFKDLPNAFLIESASASWAGITVVERTLALMQAALEADGDGGXXXXXXXXXXKDCGNGDHSXXXXXXXXXGWRYFVNIGHEDYPLVPQAAASARLAAFPD 477
            I Y I+V+  P         QF R+F A+YD RN+YVVHVD  S + L   I +  +  PNA ++E  +A W G ++V+  L  MQ  L  DG+                               W +F+N+  +D+PL  QA   A L A P+
Sbjct:    2 IGYLILVHRFP--------EQFKRLFKAIYDPRNSYVVHVDKNSGETLDADIRDFLQPYPNAEVMEGHAAVWGGYSLVDAELRGMQHLLTMDGN-------------------------------WSHFINLSGQDFPLKTQAQIMAHLRAHPN 116          
BLAST of mRNA_P-wetherbeei_contig13307.1.2 vs. uniprot
Match: A0A0D0L3H0_RHIRD (Glycosyl transferase n=3 Tax=Rhizobium/Agrobacterium group TaxID=227290 RepID=A0A0D0L3H0_RHIRD)

HSP 1 Score: 70.9 bits (172), Expect = 1.360e-10
Identity = 50/165 (30.30%), Postives = 74/165 (44.85%), Query Frame = 1
Query:   16 IAYGIMVYVRPGHDLEAVFRQFNRMFSALYDARNTYVVHVDIKSDKRLQELIEERFKDLPNAFLIESASASWAGITVVERTLALMQAALEADGDGGXXXXXXXXXXKDCGNGDHSXXXXXXXXXGWRYFVNIGHEDYPLVPQAAASARLAAFPDGTNFIKCWNIE 510
            I Y I+V+  P        +QF R+F A+YD RN+YVVHVD  S + L   I    K   NA ++E  +A W G ++V+  L  M+  L  +G+                               W +F+N+  +D+PL  QA   A L   P G  +IK ++ E
Sbjct:    2 IGYLILVHRFP--------KQFKRLFKAIYDPRNSYVVHVDKNSGEALNADISNFLKPYSNAEVMEGHAALWGGYSLVDAELRGMEHLLAMNGE-------------------------------WSHFINLSGQDFPLKTQAQIMAYLMDHP-GREYIKAFDQE 126          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig13307.1.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S2UWP2_9STRA6.360e-7749.82Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A6T5PXW9_HETAK1.290e-7349.82Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A4D9D7W1_9STRA5.040e-6849.82Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A835YXC2_9STRA6.010e-6646.24Core-2/I-branching enzyme-domain-containing protei... [more]
D8LSR7_ECTSI2.220e-5341.39Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
W7UCA6_9STRA7.580e-4747.78Core-2 i-branching enzyme n=1 Tax=Nannochloropsis ... [more]
A0A7S1U3N2_9STRA1.170e-3840.98Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A6H5JPB4_9PHAE1.030e-3753.15Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A1L3ZQA3_RHILE8.150e-1231.82Glycosyl transferase n=1 Tax=Rhizobium leguminosar... [more]
A0A0D0L3H0_RHIRD1.360e-1030.30Glycosyl transferase n=3 Tax=Rhizobium/Agrobacteri... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig13307contigP-wetherbeei_contig13307:255..1659 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog421531.IX38_18145
PFAMsBranch
Model size816
Max annot lvl976|Bacteroidetes
KEGG koko:K00771
KEGG ReactionR05925
KEGG Pathwayko00532,ko00534,ko01100,map00532,map00534,map01100
KEGG ModuleM00057
Hectar predicted targeting categoryother localisation
Exons3
Evalue2.97e-09
EggNOG OGsCOG0463@1|root,COG0463@2|Bacteria,4NNK6@976|Bacteroidetes,1IK0D@117743|Flavobacteriia,3ZRFM@59732|Chryseobacterium
EC2.4.2.26
Descriptionglycosyl transferase
Cds size786
COG categoryM
CAZyGT14
BRITEko00000,ko00001,ko00002,ko01000,ko01003
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185980.8779395-UTR-P-wetherbeei_contig13307:254..2841683185980.8779395-UTR-P-wetherbeei_contig13307:254..284Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig13307 255..284 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185980.8938181-CDS-P-wetherbeei_contig13307:284..4751683185980.8938181-CDS-P-wetherbeei_contig13307:284..475Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13307 285..475 +
1683185980.9010634-CDS-P-wetherbeei_contig13307:743..10831683185980.9010634-CDS-P-wetherbeei_contig13307:743..1083Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13307 744..1083 +
1683185980.908259-CDS-P-wetherbeei_contig13307:1404..16591683185980.908259-CDS-P-wetherbeei_contig13307:1404..1659Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13307 1405..1659 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig13307.1.2prot_P-wetherbeei_contig13307.1.2Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig13307 285..1659 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig13307.1.2

>prot_P-wetherbeei_contig13307.1.2 ID=prot_P-wetherbeei_contig13307.1.2|Name=mRNA_P-wetherbeei_contig13307.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=262bp
MVYVRPGHDLEAVFRQFNRMFSALYDARNTYVVHVDIKSDKRLQELIEER
FKDLPNAFLIESASASWAGITVVERTLALMQAALEADGDGGDNGSGGGGG
GKDCGNGDHSGGRHGGGGGGWRYFVNIGHEDYPLVPQAAASARLAAFPDG
TNFIKCWNIEGHDFFGQWEHHKTRVHAVYVDDFTGTTHDTRFRRPSMSDP
SRSPYKFFKSLQQTVLSRNFVRHAVRSAAARRLLVYMATAQAPDELFFPT
LLQLDPKFAATC
back to top

mRNA from alignment at P-wetherbeei_contig13307:255..1659+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig13307.1.2 ID=mRNA_P-wetherbeei_contig13307.1.2|Name=mRNA_P-wetherbeei_contig13307.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1405bp|location=Sequence derived from alignment at P-wetherbeei_contig13307:255..1659+ (Phaeothamnion wetherbeei SAG_119_79)
CCAACCACACCGGCAATCGCCTACGGCATCATGGTCTATGTCCGGCCTGG CCACGACCTCGAGGCCGTGTTTCGGCAGTTTAATCGCATGTTTTCGGCGC TGTATGACGCTCGAAATACCTACGTCGTCCATGTCGACATCAAGTCGGAC AAGCGTCTGCAGGAGCTCATAGAGGAGCGGTTCAAGGACCTGCCGAACGC GTTCCTGATCGAATCGGCCAGGTTAAAGTCTACTTTCAGAGTTTATTGAG GATTCCGTCTGCCGAGTGACAAGAGAAGTCCTGCAATGCATCGTTAGATA TTGGTAAAGAGTAGATCGTCTATCCTTCTTTTTATCAACTATTCCTGAAG ACACCCCAAAGCTTCTCTGGGCATCATTCCCACCGACTGATTCAGCAGTT TCGGTTCTTGCGGTTTCCTTCCTTCATCCTTTGAGTTGTAAACGCTCTTC GTTGTCCATGCAATTTCTCTTCTTCTTGGGAATCAACAGCGCAAGCTGGG CGGGCATAACCGTGGTCGAGCGGACCCTAGCACTGATGCAGGCCGCGCTG GAGGCCGACGGCGACGGCGGCGACAATGGCAGCGGCGGCGGCGGCGGCGG CAAAGACTGCGGCAACGGCGACCACAGCGGCGGCCGGCATGGCGGCGGAG GCGGCGGCTGGCGCTACTTCGTGAACATTGGGCACGAAGACTACCCGCTC GTGCCGCAGGCGGCGGCGTCGGCGCGGCTGGCGGCGTTCCCCGACGGCAC CAACTTCATAAAGTGCTGGAACATTGAGGGCCATGATTTCTTCGGGCAGT GGGAGCACCACAAGACGCGCGTCCACGCGGTGTGTTTGGTCGGTATAGAG TGCGGGCAAACGAGGTGGAAGGATGTGCCGTGTCAGCTAGCTGAAAAAAG GAGGGGTGGGCTTGAAACAGACAACTGAAACCGCGTCTTCTTAATGCCCC CCGATGGAGGGGAGCAGGCCGTTCCTCAATGAAACCCTCGTCTTCGCCAC CGCAGTTTACGTTGCAGTGCTTCCTTCAGACTGTAACCTTACCTATAGCC TGTTGTCTGTTTATTTTTCGCTTCTTTTCCTTCTGCTTCCTTCCTCTTTC TCCCCTTTTCCTTTCTTGCGTTTCTATTTTTTCCCGCAATCTGCCGGCAG GTCTACGTGGATGACTTCACGGGCACGACCCACGACACGCGCTTCAGGCG GCCCTCCATGTCCGACCCCTCCCGCTCACCCTACAAGTTTTTTAAGTCGC TCCAGCAGACCGTTCTGTCGCGCAATTTCGTCCGCCACGCCGTACGGTCG GCGGCGGCGCGGCGGCTGCTCGTGTACATGGCGACGGCGCAGGCGCCGGA CGAGTTGTTCTTCCCGACGCTGTTGCAGCTCGACCCTAAATTCGCCGCCA CGTGC
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig13307:255..1659+

>mRNA_P-wetherbeei_contig13307.1.2 ID=mRNA_P-wetherbeei_contig13307.1.2|Name=mRNA_P-wetherbeei_contig13307.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=786bp|location=Sequence derived from alignment at P-wetherbeei_contig13307:255..1659+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGTCTATGTCCGGCCTGGCCACGACCTCGAGGCCGTGTTTCGGCAGTT
TAATCGCATGTTTTCGGCGCTGTATGACGCTCGAAATACCTACGTCGTCC
ATGTCGACATCAAGTCGGACAAGCGTCTGCAGGAGCTCATAGAGGAGCGG
TTCAAGGACCTGCCGAACGCGTTCCTGATCGAATCGGCCAGCGCAAGCTG
GGCGGGCATAACCGTGGTCGAGCGGACCCTAGCACTGATGCAGGCCGCGC
TGGAGGCCGACGGCGACGGCGGCGACAATGGCAGCGGCGGCGGCGGCGGC
GGCAAAGACTGCGGCAACGGCGACCACAGCGGCGGCCGGCATGGCGGCGG
AGGCGGCGGCTGGCGCTACTTCGTGAACATTGGGCACGAAGACTACCCGC
TCGTGCCGCAGGCGGCGGCGTCGGCGCGGCTGGCGGCGTTCCCCGACGGC
ACCAACTTCATAAAGTGCTGGAACATTGAGGGCCATGATTTCTTCGGGCA
GTGGGAGCACCACAAGACGCGCGTCCACGCGGTCTACGTGGATGACTTCA
CGGGCACGACCCACGACACGCGCTTCAGGCGGCCCTCCATGTCCGACCCC
TCCCGCTCACCCTACAAGTTTTTTAAGTCGCTCCAGCAGACCGTTCTGTC
GCGCAATTTCGTCCGCCACGCCGTACGGTCGGCGGCGGCGCGGCGGCTGC
TCGTGTACATGGCGACGGCGCAGGCGCCGGACGAGTTGTTCTTCCCGACG
CTGTTGCAGCTCGACCCTAAATTCGCCGCCACGTGC
back to top